Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 3167.5 1612 100.0
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 3007.6 1616 94.9
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2894.8 1617 90.4
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2839.7 1616 88.6
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2810.4 1616 88.2
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2801.2 1614 87.8
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2793.8 1636 85.5
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2739.9 1584 87.6
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2548.9 1620 79.2
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2541.5 1611 79.2
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2540.0 1616 79.8
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2540.0 1615 79.6
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2535.0 1616 79.5
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2534.6 1616 78.8
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2533.8 1614 78.7
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2533.4 1615 78.9
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2513.4 1615 78.5
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2512.3 1615 78.1
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2506.5 1615 78.3
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2494.9 1615 77.6
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2486.8 1611 77.6
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2484.1 1615 77.3
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2479.1 1612 78.6
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2476.0 1624 77.0
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2474.5 1598 77.4
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2468.7 1625 76.8
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2468.0 1612 76.0
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2465.3 1601 77.0
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 2459.5 1620 76.8
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2449.9 1622 76.9
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2438.3 1612 76.7
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2426.7 1528 80.2
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2417.9 1641 75.0
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2414.0 1627 75.5
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2398.6 1618 76.0
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2391.3 1629 74.7
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2365.9 1926 65.1
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2362.0 1621 74.3
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2357.8 1513 78.5
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2357.4 1957 64.7
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2353.9 1613 74.1
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2352.4 1606 73.0
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2347.8 1620 73.9
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2325.4 1615 72.6
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2323.9 1593 72.8
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2316.2 1633 72.3
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2313.1 1655 72.0
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2311.2 1619 72.9
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2309.6 1630 72.7
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2309.3 1626 73.1
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2307.3 1595 73.4
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2305.4 1665 70.5
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2304.6 1626 72.5
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2303.1 1602 73.1
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2300.4 1618 71.7
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2294.6 1614 72.6
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2293.8 1612 71.9
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2290.0 1618 71.3
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2289.2 1628 71.5
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2288.5 1446 79.4
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2285.0 1616 71.7
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2278.4 1606 71.1
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2275.7 1617 71.1
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2274.2 1612 71.3
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2269.6 1628 71.3
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2249.6 1518 75.0
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2245.3 1613 70.9
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2235.7 1626 70.2
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2229.9 1598 71.5
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2223.0 1624 70.6
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2221.8 1415 78.4
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2219.1 1624 70.0
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2211.8 1623 69.7
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2208.3 1628 69.7
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2204.1 1628 69.7
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2201.0 1623 69.4
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2200.2 1625 69.5
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2192.5 1627 69.0
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2183.3 1624 69.3
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2176.7 1616 69.4
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 2151.7 1373 80.0
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2145.9 1408 78.2
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2117.8 1551 68.9
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2093.2 1620 66.7
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2080.8 1605 67.0
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 2049.2 1472 71.3
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 2042.3 1615 64.7
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2015.7 1627 64.8
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 2011.9 1648 64.3
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 1990.3 1614 64.6
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1970.7 1196 81.4
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1911.7 1613 61.9
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1855.1 1603 60.6
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1739.5 1100 79.0
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1736.9 1560 59.7
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1717.6 1229 71.3
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1601.6 1415 60.9
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1568.5 1372 61.4
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1510.7 976 75.9
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1470.3 975 74.6
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1442.6 1628 48.6
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1402.9 1223 58.9
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1390.6 1628 48.5
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1352.0 1584 46.3
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1237.6 1080 59.4
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1179.1 1624 45.6
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1157.5 732 79.0
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 1.5e-298 1030.4 646 79.7
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 7.3e-290 1001.5 534 96.8
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 4.5e-271 939.1 605 81.2
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 2.9e-262 909.8 513 91.0
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 6.3e-249 865.5 624 69.6
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 1.1e-248 864.8 583 75.6
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.3e-227 793.9 590 69.0
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.3e-227 793.9 606 67.5
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 3.0e-227 793.5 661 63.7
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.8e-214 750.0 505 73.5
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 3.6e-212 743.4 522 72.6
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 7.8e-199 699.1 478 74.9
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 1.1e-189 668.7 641 57.1
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 9.5e-189 665.6 555 63.4
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 4.3e-181 640.2 338 96.2
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 4.6e-175 620.2 419 78.3
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 8.4e-169 599.4 563 59.5
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 8.4e-169 599.4 515 62.5
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 2.2e-153 548.1 366 77.3
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 8.2e-148 529.6 488 56.1
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 6.1e-143 513.5 325 81.5
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 9.7e-141 506.1 387 69.3
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 2.0e-130 471.9 246 93.9
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 3.6e-127 461.1 292 80.8
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 5.2e-126 457.2 321 70.1
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 7.5e-117 426.8 318 66.7
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 5.0e-113 414.1 371 57.7
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 6.5e-113 413.7 251 81.7
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.9e-112 412.1 398 56.0
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.5e-109 402.5 316 65.5
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 4.7e-87 327.8 212 80.2
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 1.8e-70 272.7 161 83.2
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 3.4e-69 268.5 162 77.2
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 1.3e-60 240.0 142 78.9
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 3.2e-59 235.3 146 78.1
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 1.0e-57 230.3 142 78.2
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 3.5e-50 205.3 212 54.2
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 1.5e-48 199.9 129 76.7
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 2.8e-47 195.7 118 79.7
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.2e-39 167.9 164 57.3
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.2e-39 167.9 164 57.3
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.2e-39 167.9 164 57.3
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 6.2e-39 167.9 164 57.3
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 8.2e-39 167.5 164 56.7
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.4e-38 166.0 143 61.5
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 3.1e-38 165.6 102 77.5
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 3.1e-38 165.6 164 56.7
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 5.3e-38 164.9 164 56.7
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 2.5e-35 156.0 93 76.3
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 4.2e-35 155.2 100 71.0
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 6.7e-33 147.9 142 57.7
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 8.7e-33 147.5 101 66.3
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.2e-31 142.9 151 54.3
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.7e-31 142.1 151 54.3
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 1.4e-27 130.2 84 71.4
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 2.7e-26 125.9 100 63.0
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 4.3e-24 118.6 106 58.5
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 7.4e-24 117.9 106 57.5
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.4e-22 112.8 108 61.1
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 1.3e-20 107.1 56 87.5
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 4.7e-18 98.6 181 41.4
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 1.8e-17 96.7 55 87.3
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 3.3e-16 92.4 51 76.5
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 7.0e-14 84.7 102 51.0
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 8.5e-12 77.8 50 66.0
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 1.5e-11 77.0 56 67.9
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 7.2e-11 74.7 51 70.6
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.4e-09 70.5 54 63.0
Psat6g165840 Pisum sativum HOM05D004417 ORTHO05D322506 5.2e-09 68.6 70 52.9
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 3.3e-08 65.9 38 68.4
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 3.7e-07 62.4 56 58.9


User provided reference genes

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