Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G017500 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 3.2e-235 818.1 443 100.0
VMungo0331G1674 Vigna mungo HOM05D004497 ORTHO05D005539 7.4e-200 700.7 388 89.4
Glyma.16G034400 Glycine max HOM05D004497 ORTHO05D005539 2.5e-195 685.6 440 79.8
Glyma.07G068400 Glycine max HOM05D004497 ORTHO05D005539 5.1e-177 624.8 359 86.6
Ca_04603_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 4.4e-168 595.1 446 67.7
Ca_09070_v3 Cicer arietinum L. HOM05D004497 ORTHO05D005539 1.7e-167 593.2 391 73.9
Lj1g0020744 Lotus japonicus HOM05D004497 ORTHO05D005539 1.4e-166 590.1 391 74.9
Lalb_Chr03g0040831 Lupinus albus HOM05D004497 ORTHO05D005539 3.5e-165 585.5 448 71.2
TPR.G34454 Trifolium pratense HOM05D004497 ORTHO05D005539 2.3e-161 572.8 377 73.7
arahy.Tifrunner.gnm1.ann1.0L2FVX Arachis hypogaea HOM05D004497 ORTHO05D005539 3.0e-161 572.4 390 71.0
Psat3g028160 Pisum sativum HOM05D004497 ORTHO05D005539 3.0e-161 572.4 387 72.9
arahy.Tifrunner.gnm1.ann1.16KDXT Arachis hypogaea HOM05D004497 ORTHO05D005539 5.2e-161 571.6 390 70.8
Medtr7g106650 Medicago truncatula HOM05D004497 ORTHO05D005539 3.7e-159 565.5 391 70.8
CiPaw.08G116800 Carya illinoinensis HOM05D004497 ORTHO05D005539 8.3e-151 537.7 392 65.6
Cfa013402 Carpinus fangiana HOM05D004497 ORTHO05D005539 7.0e-150 534.6 391 65.0
Actinidia25597 Actinidia chinensis HOM05D004497 ORTHO05D005539 1.2e-149 533.9 393 64.9
Nitab4.5_0002978g0150 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.6e-149 533.5 387 65.4
Haze_07247 Corylus avellana HOM05D004497 ORTHO05D005539 1.0e-148 530.8 363 68.3
Duzib205G0501 Durio zibethinus HOM05D004497 ORTHO05D005539 5.0e-148 528.5 391 63.9
Nitab4.5_0000903g0080 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.9e-147 526.6 366 66.4
Thecc.03G125300 Theobroma cacao HOM05D004497 ORTHO05D005539 2.5e-147 526.2 391 64.5
Potri.015G092400 Populus trichocarpa HOM05D004497 ORTHO05D005539 3.2e-147 525.8 389 65.3
RcHm_v2.0_Chr7g0190661 Rosa chinensis HOM05D004497 ORTHO05D005539 5.5e-147 525.0 394 63.7
Gohir.A09G246200 Gossypium hirsutum HOM05D004497 ORTHO05D005539 9.4e-147 524.2 391 65.0
Gohir.D09G246800 Gossypium hirsutum HOM05D004497 ORTHO05D005539 1.2e-146 523.9 391 65.2
HanXRQChr05g0153981 Helianthus annuus HOM05D004497 ORTHO05D005539 8.0e-146 521.2 381 65.1
Rhsim08G0187300 Rhododendron simsii HOM05D004497 ORTHO05D005539 8.0e-146 521.2 389 64.0
Sabra15G0114200 Salix brachista HOM05D004497 ORTHO05D005539 1.0e-145 520.8 389 64.8
TWI14G0260 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 1.4e-145 520.4 444 57.7
COL.COLO4_28066 Corchorus olitorius HOM05D004497 ORTHO05D005539 1.8e-145 520.0 391 63.9
Atru.chr3.3406 Acer truncatum HOM05D004497 ORTHO05D005539 1.2e-144 517.3 391 64.2
Potri.012G095100 Populus trichocarpa HOM05D004497 ORTHO05D005539 1.2e-144 517.3 389 64.5
FvH4_5g07760 Fragaria vesca HOM05D004497 ORTHO05D005539 1.5e-144 516.9 391 64.2
Gorai.006G271300 Gossypium raimondii HOM05D004497 ORTHO05D005539 2.0e-144 516.5 391 64.7
FAN18G2816 Fragaria x ananassa HOM05D004497 ORTHO05D005539 3.4e-144 515.8 391 63.9
FAN08G0052 Fragaria x ananassa HOM05D004497 ORTHO05D005539 7.5e-144 514.6 391 64.5
Sopen08g004010 Solanum pennellii HOM05D004497 ORTHO05D005539 7.5e-144 514.6 369 65.6
Solyc08g008160.4 Solanum lycopersicum HOM05D004497 ORTHO05D005539 1.3e-143 513.8 376 64.4
Lsat_1_v5_gn_5_13520 Lactuca sativa HOM05D004497 ORTHO05D005539 1.7e-143 513.5 382 64.7
PGSC0003DMG400005828 Solanum tuberosum HOM05D004497 ORTHO05D005539 1.7e-143 513.5 369 65.6
FAN04G2053 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.4e-142 510.4 391 63.7
Eucgr.C01065 Eucalyptus grandis HOM05D004497 ORTHO05D005539 1.8e-142 510.0 394 63.2
QL10p004476 Quercus lobata HOM05D004497 ORTHO05D005539 2.4e-142 509.6 393 64.4
CsaV3_1G009480 Cucumis sativus L. HOM05D004497 ORTHO05D005539 7.0e-142 508.1 390 63.1
TAR625G0069 Trochodendron aralioides HOM05D004497 ORTHO05D005539 1.2e-141 507.3 393 62.8
CSS0032894 Camellia sinensis var. sinensis HOM05D004497 ORTHO05D005539 2.7e-141 506.1 356 66.6
ECA246G4485 Erigeron canadensis HOM05D004497 ORTHO05D005539 3.5e-141 505.8 385 63.4
GSVIVG01013111001 Vitis vinifera HOM05D004497 ORTHO05D005539 5.9e-141 505.0 362 66.6
Eucgr.K00186 Eucalyptus grandis HOM05D004497 ORTHO05D005539 7.7e-141 504.6 394 62.7
Gohir.A12G276900 Gossypium hirsutum HOM05D004497 ORTHO05D005539 3.8e-140 502.3 360 66.1
QL93p0225_0015 Quercus lobata HOM05D004497 ORTHO05D005539 3.8e-140 502.3 393 63.6
CANSAT56G3508 Cannabis sativa HOM05D004497 ORTHO05D005539 8.6e-140 501.1 360 66.1
SGA_v2.0_scaffold215G42316 Striga asiatica HOM05D004497 ORTHO05D005539 8.6e-140 501.1 388 62.6
vmacro20468 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 8.6e-140 501.1 362 64.1
QL07p000007 Quercus lobata HOM05D004497 ORTHO05D005539 1.9e-139 500.0 393 63.4
Sc10g0010400 Simmondsia chinensis HOM05D004497 ORTHO05D005539 2.5e-139 499.6 359 65.2
Peaxi162Scf00078g00424 Petunia axillaris HOM05D004497 ORTHO05D005539 4.2e-139 498.8 339 68.4
ClCG03G003620 Citrullus lanatus HOM05D004497 ORTHO05D005539 5.5e-139 498.4 391 61.9
Migut.I00519 Erythranthe guttata HOM05D004497 ORTHO05D005539 5.5e-139 498.4 390 63.1
MD14G1161100 Malus domestica HOM05D004497 ORTHO05D005539 1.2e-138 497.3 392 62.8
QL04p081834 Quercus lobata HOM05D004497 ORTHO05D005539 1.2e-138 497.3 407 62.2
Hund03342 Selenicereus undatus HOM05D004497 ORTHO05D005539 2.1e-138 496.5 355 66.2
SalBow8G1477 Salvia bowleyana HOM05D004497 ORTHO05D005539 2.8e-138 496.1 388 62.6
TAR629G1275 Trochodendron aralioides HOM05D004497 ORTHO05D005539 2.8e-138 496.1 401 60.3
Ciclev10020238m.g Citrus clementina HOM05D004497 ORTHO05D005539 1.8e-137 493.4 392 63.0
PGR083G2085 Punica granatum HOM05D004497 ORTHO05D005539 8.9e-137 491.1 356 66.3
Cc05_g04600 Coffea canephora HOM05D004497 ORTHO05D005539 1.5e-136 490.3 391 60.1
MD06G1147200 Malus domestica HOM05D004497 ORTHO05D005539 7.5e-136 488.0 392 62.0
Sed0020059 Sechium edule HOM05D004497 ORTHO05D005539 7.5e-136 488.0 387 60.5
SalBow5G0098 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.7e-135 486.9 414 59.4
SalBow5G4825 Salvia bowleyana HOM05D004497 ORTHO05D005539 1.7e-135 486.9 414 59.4
THA.LOC104820611 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 2.8e-135 486.1 372 63.2
MSTRG.22910 Avicennia marina HOM05D004497 ORTHO05D005539 3.7e-135 485.7 388 61.1
Lj9A476T57 Lonicera japonica HOM05D004497 ORTHO05D005539 8.3e-135 484.6 340 66.2
Manes.14G053800 Manihot esculenta HOM05D004497 ORTHO05D005539 1.1e-134 484.2 385 62.1
Ah.08g212900 Amaranthus hybridus HOM05D004497 ORTHO05D005539 3.2e-134 482.6 358 65.9
MELO3C002347.2 Cucumis melo HOM05D004497 ORTHO05D005539 4.1e-134 482.3 340 66.5
FAN13G1359 Fragaria x ananassa HOM05D004497 ORTHO05D005539 1.7e-132 476.9 362 63.5
EL10As4g23444 Beta vulgaris HOM05D004497 ORTHO05D005539 2.3e-132 476.5 355 65.4
MBI11_g15865_MAGBIO Magnolia biondii HOM05D004497 ORTHO05D005539 2.3e-132 476.5 357 62.7
Aqoxy5G03475 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 6.6e-132 474.9 363 60.1
THA.LOC104814264 Tarenaya hassleriana HOM05D004497 ORTHO05D005539 8.6e-132 474.6 369 61.0
Nn4g26409 Nelumbo nucifera HOM05D004497 ORTHO05D005539 1.1e-131 474.2 393 60.8
Dinv11148 Davidia involucrata HOM05D004497 ORTHO05D005539 9.5e-131 471.1 368 62.5
Carub.0001s2754 Capsella rubella HOM05D004497 ORTHO05D005539 4.7e-130 468.8 391 60.4
PSO063G4711 Papaver somniferum HOM05D004497 ORTHO05D005539 8.0e-130 468.0 388 60.8
PSO782G0077 Papaver somniferum HOM05D004497 ORTHO05D005539 1.4e-129 467.2 388 61.1
Sp1g25270 Schrenkiella parvula HOM05D004497 ORTHO05D005539 4.0e-129 465.7 383 58.7
AL1G43130 Arabidopsis lyrata HOM05D004497 ORTHO05D005539 2.0e-128 463.4 393 59.5
BolC3t19835H Brassica oleracea HOM05D004497 ORTHO05D005539 2.6e-128 463.0 384 59.1
Thhalv10007651m.g Eutrema salsugineum HOM05D004497 ORTHO05D005539 2.6e-128 463.0 381 59.1
A08p25140 Brassica napus HOM05D004497 ORTHO05D005539 9.8e-128 461.1 372 59.9
Dinv04858 Davidia involucrata HOM05D004497 ORTHO05D005539 2.2e-127 459.9 321 66.7
CARHR028640 Cardamine hirsuta HOM05D004497 ORTHO05D005539 2.9e-127 459.5 388 59.0
C03p75750 Brassica napus HOM05D004497 ORTHO05D005539 3.7e-127 459.1 372 59.4
BolC5t31537H Brassica oleracea HOM05D004497 ORTHO05D005539 1.4e-126 457.2 370 59.5
BraA09t39216Z Brassica rapa HOM05D004497 ORTHO05D005539 1.4e-126 457.2 355 61.4
Oeu005018.3 Olea europaea HOM05D004497 ORTHO05D005539 2.4e-126 456.4 425 54.8
BcaC01g00099 Brassica carinata HOM05D004497 ORTHO05D005539 4.1e-126 455.7 372 59.4
BcaC05g26958 Brassica carinata HOM05D004497 ORTHO05D005539 5.4e-126 455.3 372 59.1
C05p28100 Brassica napus HOM05D004497 ORTHO05D005539 5.4e-126 455.3 372 59.1
AT1G29320 Arabidopsis thaliana HOM05D004497 ORTHO05D005539 7.0e-126 454.9 393 58.0
BcaB03g12154 Brassica carinata HOM05D004497 ORTHO05D005539 3.5e-125 452.6 373 59.5
Aa31LG6G6220 Aethionema arabicum HOM05D004497 ORTHO05D005539 6.0e-125 451.8 355 62.5
CDE08G0729 Ceratophyllum demersum HOM05D004497 ORTHO05D005539 3.9e-124 449.1 383 56.7
BcaB07g32523 Brassica carinata HOM05D004497 ORTHO05D005539 1.1e-123 447.6 377 58.6
A09p36980 Brassica napus HOM05D004497 ORTHO05D005539 1.9e-123 446.8 370 58.1
BraA08t34469Z Brassica rapa HOM05D004497 ORTHO05D005539 7.3e-123 444.9 411 54.7
Prupe.1G584300 Prunus persica HOM05D004497 ORTHO05D005539 1.1e-118 431.0 388 57.5
AUR62025903 Chenopodium quinoa HOM05D004497 ORTHO05D005539 5.4e-118 428.7 392 55.6
TWI39G1139 Tripterygium wilfordii HOM05D004497 ORTHO05D005539 9.2e-118 427.9 389 55.5
Zm00001eb105680 Zea mays HOM05D004497 ORTHO05D005539 2.7e-117 426.4 385 55.6
DCAR_012679 Daucus carota HOM05D004497 ORTHO05D005539 4.6e-117 425.6 360 58.1
ATR0171G018 Amborella trichopoda HOM05D004497 ORTHO05D005539 5.6e-115 418.7 361 54.6
CiPaw.11G010200 Carya illinoinensis HOM05D004497 ORTHO05D005539 3.6e-114 416.0 318 63.5
Cfa014010 Carpinus fangiana HOM05D004497 ORTHO05D005539 1.1e-113 414.5 391 55.0
HPP92_023861 Vanilla planifolia HOM05D004497 ORTHO05D005539 1.2e-112 411.0 365 53.7
SEGI_30468 Sequoiadendron giganteum HOM05D004497 ORTHO05D005539 7.6e-112 408.3 385 49.6
Cpa.g.sc166.23 Carica papaya HOM05D004497 ORTHO05D005539 4.9e-111 405.6 291 66.0
AUR62025086 Chenopodium quinoa HOM05D004497 ORTHO05D005539 7.1e-110 401.7 344 58.1
Duzib068G0683 Durio zibethinus HOM05D004497 ORTHO05D005539 2.7e-109 399.8 291 64.3
AUR62032705 Chenopodium quinoa HOM05D004497 ORTHO05D005539 4.4e-104 382.5 403 49.6
Sed0003097 Sechium edule HOM05D004497 ORTHO05D005539 1.2e-101 374.4 280 63.6
SHI10599 Sapria himalayana HOM05D004497 ORTHO05D005539 1.6e-101 374.0 323 54.5
Aqoxy5G03495 Aquilegia oxysepala HOM05D004497 ORTHO05D005539 2.2e-95 353.6 293 55.6
Sabra12G0069700 Salix brachista HOM05D004497 ORTHO05D005539 9.3e-94 348.2 298 58.7
Mapoly0079s0016 Marchantia polymorpha HOM05D004497 ORTHO05D005539 4.3e-91 339.3 369 46.9
unitig_699.g19657 Utricularia gibba HOM05D004497 ORTHO05D005539 5.6e-91 339.0 388 48.7
AUR62025094 Chenopodium quinoa HOM05D004497 ORTHO05D005539 4.5e-88 329.3 291 56.0
Pp3c13_24500 Physcomitrium patens HOM05D004497 ORTHO05D005539 1.2e-85 321.2 395 44.3
SMO165G0173 Selaginella moellendorffii HOM05D004497 ORTHO05D005539 4.3e-83 312.8 397 45.1
Os07g0506700 Oryza sativa ssp. japonica HOM05D004497 ORTHO05D005539 1.2e-80 304.7 295 51.5
Nitab4.5_0003013g0030 Nicotiana tabacum HOM05D004497 ORTHO05D005539 1.9e-78 297.4 340 48.5
Zm00001eb322320 Zea mays HOM05D004497 ORTHO05D005539 2.0e-72 277.3 203 63.5
vmacro19222 Vaccinium macrocarpon HOM05D004497 ORTHO05D005539 2.2e-66 257.3 347 42.9
Ca_16680_v3 Cicer arietinum L. HOM05D000160 ORTHO05D000496 1.3e-58 231.5 165 67.9
AUR62029644 Chenopodium quinoa HOM05D004497 ORTHO05D005539 1.1e-57 228.4 228 53.1
Actinidia19491 Actinidia chinensis HOM05D004497 ORTHO05D005539 2.0e-56 224.2 324 40.4
AagrBONN_evm.TU.Sc2ySwM_344.3271 Anthoceros agrestis HOM05D000006 ORTHO05D004030 1.4e-54 218.0 302 41.7
RcHm_v2.0_Chr0c30g0501231 Rosa chinensis HOM05D004497 ORTHO05D005539 5.1e-52 209.5 358 39.4
RcHm_v2.0_Chr3g0452771 Rosa chinensis HOM05D004497 ORTHO05D005539 5.1e-52 209.5 358 39.4
CBR_g31949 Chara braunii HOM05D004497 ORTHO05D005539 1.4e-49 201.4 352 36.1
SalBow8G1815 Salvia bowleyana HOM05D004497 ORTHO05D005539 5.3e-49 199.5 153 65.4
AUR62025088 Chenopodium quinoa HOM05D004497 ORTHO05D005539 2.1e-45 187.6 230 46.5
RcHm_v2.0_Chr5g0041021 Rosa chinensis HOM05D004497 ORTHO05D005539 5.9e-40 169.5 370 34.3
AUR62025079 Chenopodium quinoa HOM05D004497 ORTHO05D005539 3.4e-35 153.7 119 59.7
Phvul.003G017700 Phaseolus vulgaris HOM05D004497 ORTHO05D005539 3.8e-31 140.2 85 84.7
MCO03G018 Micromonas commoda HOM05D004497 ORTHO05D005539 2.7e-24 117.5 372 27.7
Gohir.D13G181701 Gossypium hirsutum HOM05D004497 ORTHO05D005539 4.5e-24 116.7 104 52.9
TAR371G1248 Trochodendron aralioides HOM05D004497 ORTHO05D005539 4.0e-20 103.6 81 58.0
PRCOL_00003967 Prasinoderma coloniale HOM05D004497 ORTHO05D005539 1.7e-18 98.2 203 32.0
Cre17.g718650 Chlamydomonas reinhardtii HOM05D004497 ORTHO05D005539 2.2e-18 97.8 375 24.3
AUR62025092 Chenopodium quinoa HOM05D004497 ORTHO05D005539 7.0e-17 92.8 53 77.4
Oeu006698.1 Olea europaea HOM05D004497 ORTHO05D005539 3.9e-15 87.0 71 57.7
C04p39580 Brassica napus HOM05D004497 ORTHO05D005539 7.3e-14 82.8 85 49.4
BolC4t25523H Brassica oleracea HOM05D004497 ORTHO05D005539 7.3e-14 82.8 85 49.4
COL.COLO4_36170 Corchorus olitorius HOM05D021494 ORTHO05D022415 3.7e-10 70.5 41 75.6


User provided reference genes

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