Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G012700 Phaseolus vulgaris HOM05D006858 ORTHO05D008767 7.5e-176 621.7 768 100.0
VMungo1215G0504 Vigna mungo HOM05D006858 ORTHO05D008767 1.2e-136 491.5 747 93.0
Glyma.20G010100 Glycine max HOM05D006858 ORTHO05D008767 1.5e-102 378.3 774 83.5
Lalb_Chr10g0095481 Lupinus albus HOM05D006858 ORTHO05D008767 2.1e-85 321.2 768 80.2
Lj2g0007949 Lotus japonicus HOM05D006858 ORTHO05D008767 6.6e-79 299.7 750 80.1
arahy.Tifrunner.gnm1.ann1.U9N0YZ Arachis hypogaea HOM05D006858 ORTHO05D008767 4.1e-73 280.4 776 77.2
arahy.Tifrunner.gnm1.ann1.3PJ361 Arachis hypogaea HOM05D006858 ORTHO05D008767 1.0e-71 275.8 763 77.9
Cfa005452 Carpinus fangiana HOM05D006858 ORTHO05D008767 1.7e-71 275.0 751 79.1
TPR.G11140 Trifolium pratense HOM05D006858 ORTHO05D008767 3.3e-70 270.8 733 78.6
Medtr1g033960 Medicago truncatula HOM05D006858 ORTHO05D008767 1.2e-69 268.9 745 76.9
Haze_01905 Corylus avellana HOM05D006858 ORTHO05D008767 4.4e-67 260.4 751 57.5
QL11p037400 Quercus lobata HOM05D006858 ORTHO05D008767 7.5e-67 259.6 754 78.5
Prupe.7G039700 Prunus persica HOM05D006858 ORTHO05D008767 1.7e-66 258.5 751 78.0
CiPaw.06G142100 Carya illinoinensis HOM05D006858 ORTHO05D008767 1.1e-65 255.8 767 76.8
Manes.17G093600 Manihot esculenta HOM05D006858 ORTHO05D008767 1.1e-65 255.8 741 77.9
MD10G1090200 Malus domestica HOM05D006858 ORTHO05D008767 1.9e-65 255.0 746 78.3
Duzib132G0284 Durio zibethinus HOM05D006858 ORTHO05D008767 2.7e-64 251.1 740 77.8
Gohir.A03G191600 Gossypium hirsutum HOM05D006858 ORTHO05D008767 1.0e-63 249.2 762 76.2
RcHm_v2.0_Chr6g0258901 Rosa chinensis HOM05D006858 ORTHO05D008767 3.0e-63 247.7 752 77.4
Ca_29767_v3 Cicer arietinum L. HOM05D006858 ORTHO05D008767 6.6e-63 246.5 743 76.9
Ca_12460_v3 Cicer arietinum L. HOM05D006858 ORTHO05D008767 1.1e-62 245.7 739 76.9
FvH4_2g06720 Fragaria vesca HOM05D006858 ORTHO05D008767 7.3e-62 243.0 753 77.4
FAN24G1409 Fragaria x ananassa HOM05D006858 ORTHO05D008767 7.3e-62 243.0 753 77.6
Atru.chr5.2775 Acer truncatum HOM05D006858 ORTHO05D008767 1.1e-60 239.2 746 75.6
Sp7g02300 Schrenkiella parvula HOM05D006858 ORTHO05D008767 1.4e-60 238.8 761 75.4
THA.LOC104804370 Tarenaya hassleriana HOM05D006858 ORTHO05D008767 1.4e-60 238.8 745 76.9
C04p46110 Brassica napus HOM05D006858 ORTHO05D008767 1.8e-60 238.4 758 73.7
Sabra09G0080800 Salix brachista HOM05D006858 ORTHO05D008767 1.8e-60 238.4 761 74.8
BolC4t26195H Brassica oleracea HOM05D006858 ORTHO05D008767 5.2e-60 236.9 758 73.5
AT5G39710 Arabidopsis thaliana HOM05D006858 ORTHO05D008767 1.2e-59 235.7 744 77.2
Thhalv10027654m.g Eutrema salsugineum HOM05D006858 ORTHO05D008767 1.2e-59 235.7 761 74.4
Psat6g096520 Pisum sativum HOM05D006858 ORTHO05D008767 2.6e-59 234.6 159 70.4
Aa31LG9G16400 Aethionema arabicum HOM05D006858 ORTHO05D008767 3.4e-59 234.2 751 75.9
FAN15G2218 Fragaria x ananassa HOM05D006858 ORTHO05D008767 3.4e-59 234.2 746 77.2
Potri.009G105600 Populus trichocarpa HOM05D006858 ORTHO05D008767 4.4e-59 233.8 739 75.1
CANSAT25G3187 Cannabis sativa HOM05D006858 ORTHO05D008767 7.5e-59 233.0 746 76.0
PGR142G0738 Punica granatum HOM05D006858 ORTHO05D008767 3.7e-58 230.7 744 75.3
Thecc.02G097300 Theobroma cacao HOM05D006858 ORTHO05D008767 4.9e-58 230.3 742 73.3
FAN20G2333 Fragaria x ananassa HOM05D006858 ORTHO05D008767 1.1e-57 229.2 746 59.9
TWI31G0517 Tripterygium wilfordii HOM05D006858 ORTHO05D008767 1.4e-57 228.8 745 76.0
TAR628G1172 Trochodendron aralioides HOM05D006858 ORTHO05D008767 7.1e-57 226.5 749 74.1
CSS0006454 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 2.7e-56 224.6 744 76.7
CSS0049463 Camellia sinensis var. sinensis HOM05D006858 ORTHO05D008767 2.7e-56 224.6 744 76.7
Sed0026070 Sechium edule HOM05D006858 ORTHO05D008767 2.7e-56 224.6 738 76.7
BraA04t16905Z Brassica rapa HOM05D006858 ORTHO05D008767 2.3e-55 221.5 758 73.1
Gohir.D02G212500 Gossypium hirsutum HOM05D006858 ORTHO05D008767 6.6e-55 219.9 149 71.1
Ciclev10028118m.g Citrus clementina HOM05D006858 ORTHO05D008767 4.3e-54 217.2 149 68.5
A04p12420 Brassica napus HOM05D006858 ORTHO05D008767 7.3e-54 216.5 740 74.1
vmacro13394 Vaccinium macrocarpon HOM05D006858 ORTHO05D008767 4.7e-53 213.8 149 67.8
Sc08g0000040 Simmondsia chinensis HOM05D006858 ORTHO05D008767 6.2e-53 213.4 747 75.2
ClCG02G005770 Citrullus lanatus HOM05D006858 ORTHO05D008767 8.1e-53 213.0 736 76.0
FAN27G2753 Fragaria x ananassa HOM05D006858 ORTHO05D008767 1.4e-52 212.2 156 66.7
Rhsim05G0081400 Rhododendron simsii HOM05D006858 ORTHO05D008767 5.2e-52 210.3 157 63.7
BcaB06g27362 Brassica carinata HOM05D006858 ORTHO05D008767 6.8e-52 209.9 148 66.9
MELO3C018437.2 Cucumis melo HOM05D006858 ORTHO05D008767 2.2e-50 204.9 736 75.4
CsaV3_7G008750 Cucumis sativus L. HOM05D006858 ORTHO05D008767 2.9e-50 204.5 736 75.0
AUR62011433 Chenopodium quinoa HOM05D006858 ORTHO05D008767 4.9e-50 203.8 756 73.8
AUR62016628 Chenopodium quinoa HOM05D006858 ORTHO05D008767 4.9e-50 203.8 149 64.4
Eucgr.I01171 Eucalyptus grandis HOM05D006858 ORTHO05D008767 1.1e-49 202.6 154 60.4
MSTRG.27720 Avicennia marina HOM05D006858 ORTHO05D008767 7.1e-49 199.9 738 69.2
Nn4g22909 Nelumbo nucifera HOM05D006858 ORTHO05D008767 9.2e-49 199.5 747 74.8
EL10Ac9g21827 Beta vulgaris HOM05D006858 ORTHO05D008767 1.2e-48 199.1 750 74.3
GSVIVG01031787001 Vitis vinifera HOM05D006858 ORTHO05D008767 1.6e-48 198.7 135 67.4
Ah.01g020130 Amaranthus hybridus HOM05D006858 ORTHO05D008767 2.1e-48 198.4 762 74.0
Aqoxy6G01416 Aquilegia oxysepala HOM05D006858 ORTHO05D008767 2.7e-48 198.0 156 60.3
COL.COLO4_32688 Corchorus olitorius HOM05D006858 ORTHO05D008767 3.5e-48 197.6 740 72.2
PGSC0003DMG401025809 Solanum tuberosum HOM05D006858 ORTHO05D008767 6.0e-48 196.8 760 73.2
Peaxi162Scf00016g00164 Petunia axillaris HOM05D006858 ORTHO05D008767 7.8e-48 196.4 755 74.2
Nitab4.5_0005583g0010 Nicotiana tabacum HOM05D006858 ORTHO05D008767 1.3e-47 195.7 740 75.4
Dinv23584 Davidia involucrata HOM05D006858 ORTHO05D008767 1.7e-47 195.3 156 60.9
Gorai.005G240500 Gossypium raimondii HOM05D006858 ORTHO05D008767 1.7e-47 195.3 134 69.4
Sopen01g050630 Solanum pennellii HOM05D006858 ORTHO05D008767 1.7e-47 195.3 761 72.9
CAN.G322.19 Capsicum annuum HOM05D006858 ORTHO05D008767 3.0e-47 194.5 746 74.4
HanXRQChr10g0303231 Helianthus annuus HOM05D006858 ORTHO05D008767 3.0e-47 194.5 154 58.4
ECA234G1772 Erigeron canadensis HOM05D006858 ORTHO05D008767 5.1e-47 193.7 154 58.4
DCAR_022059 Daucus carota HOM05D006858 ORTHO05D008767 6.6e-47 193.4 749 73.6
AL7G50600 Arabidopsis lyrata HOM05D006858 ORTHO05D008767 9.6e-46 189.5 213 49.8
CARHR262550 Cardamine hirsuta HOM05D006858 ORTHO05D008767 3.6e-45 187.6 213 48.8
Nitab4.5_0004334g0100 Nicotiana tabacum HOM05D006858 ORTHO05D008767 3.6e-45 187.6 149 57.7
Lsat_1_v5_gn_5_113361 Lactuca sativa HOM05D006858 ORTHO05D008767 6.8e-44 183.3 757 71.9
Cpa.g.sc62.38 Carica papaya HOM05D006858 ORTHO05D008767 7.6e-43 179.9 213 49.3
PGSC0003DMG402025785 Solanum tuberosum HOM05D006858 ORTHO05D008767 1.7e-42 178.7 149 56.4
Oeu013687.1 Olea europaea HOM05D006858 ORTHO05D008767 2.2e-42 178.3 712 71.6
Migut.N01200 Erythranthe guttata HOM05D006858 ORTHO05D008767 8.4e-42 176.4 739 72.1
SHI05381 Sapria himalayana HOM05D006858 ORTHO05D008767 1.9e-41 175.3 733 70.8
BcaB06g27361 Brassica carinata HOM05D006858 ORTHO05D008767 7.1e-41 173.3 228 43.9
SGA_v2.0_scaffold13G06572 Striga asiatica HOM05D006858 ORTHO05D008767 9.3e-41 172.9 147 54.4
RcHm_v2.0_Chr7g0233241 Rosa chinensis HOM05D006858 ORTHO05D008767 7.8e-40 169.9 156 58.3
Os06g0152500 Oryza sativa ssp. japonica HOM05D006858 ORTHO05D008767 1.8e-36 158.7 147 51.0
Lj9A359T74 Lonicera japonica HOM05D006858 ORTHO05D008767 3.1e-36 157.9 149 52.3
TAR633G1647 Trochodendron aralioides HOM05D006858 ORTHO05D008767 6.9e-36 156.8 149 53.0
Actinidia17852 Actinidia chinensis HOM05D006858 ORTHO05D008767 1.5e-35 155.6 233 45.1
Zm00001eb376700 Zea mays HOM05D006858 ORTHO05D008767 5.8e-35 153.7 144 50.7
Solyc01g108410.3 Solanum lycopersicum HOM05D006858 ORTHO05D008767 4.9e-34 150.6 230 42.2
CDE09G0572 Ceratophyllum demersum HOM05D006858 ORTHO05D008767 2.4e-33 148.3 140 50.0
Prupe.8G118500 Prunus persica HOM05D006858 ORTHO05D008767 9.3e-33 146.4 135 57.8
Carub.0007s3617 Capsella rubella HOM05D006858 ORTHO05D008767 1.1e-30 139.4 148 48.0
CAN.G322.18 Capsicum annuum HOM05D006858 ORTHO05D008767 2.1e-29 135.2 217 42.4
Carub.0007s3622 Capsella rubella HOM05D006858 ORTHO05D008767 2.1e-24 118.6 208 37.5
Carub.0007s3618 Capsella rubella HOM05D006858 ORTHO05D008767 2.7e-24 118.2 150 46.0
GSVIVG01031788001 Vitis vinifera HOM05D006858 ORTHO05D008767 5.6e-22 110.5 161 42.9
Zm00001eb348200 Zea mays HOM05D006858 ORTHO05D008767 2.8e-21 108.2 144 41.0
TPR.G40260 Trifolium pratense HOM05D006858 ORTHO05D008767 9.0e-20 103.2 120 49.2
SEGI_33508 Sequoiadendron giganteum HOM05D006858 ORTHO05D008767 3.0e-15 88.2 223 32.7
ATR0043G025 Amborella trichopoda HOM05D006858 ORTHO05D008767 8.7e-15 86.7 83 45.8
Carub.0007s3621 Capsella rubella HOM05D006858 ORTHO05D008767 2.1e-13 82.0 229 32.8
Oeu007259.1 Olea europaea HOM05D006858 ORTHO05D008767 6.3e-13 80.5 216 31.5
HPP92_006001 Vanilla planifolia HOM05D006858 ORTHO05D008767 6.3e-13 80.5 210 29.5
Phvul.010G143400 Phaseolus vulgaris HOM05D006931 ORTHO05D008782 3.4e-11 74.7 193 32.6
SEGI_34198 Sequoiadendron giganteum HOM05D007545 ORTHO05D009579 1.7e-10 72.4 213 29.1
ATR1120G070 Amborella trichopoda HOM05D006858 ORTHO05D008767 5.0e-10 70.9 167 34.1
SEGI_16669 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.1e-09 69.7 179 29.6
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 1.4e-09 69.3 185 30.3
VMungo0331G0870 Vigna mungo HOM05D006931 ORTHO05D008782 1.4e-09 69.3 190 32.1
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 1.9e-09 68.9 188 29.3
Glyma.08G199100 Glycine max HOM05D006931 ORTHO05D008782 2.5e-09 68.6 193 32.6
CAN.G322.17 Capsicum annuum HOM05D002196 ORTHO05D011452 4.2e-09 67.8 50 64.0
EL10Ac4g07549 Beta vulgaris HOM05D007390 ORTHO05D009114 5.5e-09 67.4 161 29.8
Ah.03g135270 Amaranthus hybridus HOM05D007390 ORTHO05D009114 7.2e-09 67.0 159 30.2
Gohir.A04G119800 Gossypium hirsutum HOM05D006931 ORTHO05D008782 7.2e-09 67.0 184 31.0
Gorai.012G149400 Gossypium raimondii HOM05D006931 ORTHO05D008782 7.2e-09 67.0 184 31.0
Sc16g0008150 Simmondsia chinensis HOM05D007390 ORTHO05D009114 7.2e-09 67.0 161 30.4
TPR.G6774 Trifolium pratense HOM05D006858 ORTHO05D008767 9.3e-09 66.6 64 54.7
Gohir.D04G161400 Gossypium hirsutum HOM05D006931 ORTHO05D008782 1.6e-08 65.9 184 31.0
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 1.8e-07 62.4 130 27.7
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 1.8e-07 62.4 130 27.7
Lj3g0013378 Lotus japonicus HOM05D006931 ORTHO05D008782 1.8e-07 62.4 188 30.9
Lj3g0024796 Lotus japonicus HOM05D006931 ORTHO05D008782 1.8e-07 62.4 188 30.9
arahy.Tifrunner.gnm1.ann1.HW3SC4 Arachis hypogaea HOM05D007291 ORTHO05D009038 2.3e-07 62.0 167 28.7
ATR1159G005 Amborella trichopoda HOM05D006931 ORTHO05D008782 3.0e-07 61.6 184 28.3
ClCG03G004730 Citrullus lanatus HOM05D002890 ORTHO05D009847 3.9e-07 61.2 229 24.5
CsaV3_6G009550 Cucumis sativus L. HOM05D006931 ORTHO05D008782 3.9e-07 61.2 184 29.3
Manes.10G064000 Manihot esculenta HOM05D007496 ORTHO05D009479 3.9e-07 61.2 188 27.1
PGR142G4068 Punica granatum HOM05D005287 ORTHO05D006893 5.1e-07 60.8 187 28.9
TPR.G8749 Trifolium pratense HOM05D006931 ORTHO05D008782 6.7e-07 60.5 183 27.3
Potri.014G166001 Populus trichocarpa HOM05D006931 ORTHO05D008782 8.7e-07 60.1 180 30.6
Sabra14G0126400 Salix brachista HOM05D006931 ORTHO05D008782 8.7e-07 60.1 182 29.7
MELO3C025970.2 Cucumis melo HOM05D006931 ORTHO05D008782 1.5e-06 59.3 184 28.8
RcHm_v2.0_Chr7g0233231 Rosa chinensis HOM05D006858 ORTHO05D008767 1.9e-06 58.9 51 60.8
Prupe.3G201200 Prunus persica HOM05D003210 ORTHO05D000001 2.5e-06 58.5 123 30.9
Hund13321 Selenicereus undatus HOM05D005973 ORTHO05D007285 2.5e-06 58.5 113 31.0
Migut.H01009 Erythranthe guttata HOM05D007291 ORTHO05D009038 4.3e-06 57.8 218 26.6
Haze_04061 Corylus avellana HOM05D004265 ORTHO05D005175 7.4e-06 57.0 226 22.6
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 9.7e-06 56.6 185 25.4
VMungo1215G2034 Vigna mungo HOM05D003210 ORTHO05D000001 9.7e-06 56.6 143 26.6


User provided reference genes

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