Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G011700 Phaseolus vulgaris HOM05D004816 ORTHO05D006043 1.5e-273 945.7 510 100.0
Glyma.20G009200 Glycine max HOM05D004816 ORTHO05D006043 5.3e-226 787.7 513 85.0
VMungo1215G1045 Vigna mungo HOM05D004816 ORTHO05D006043 2.8e-219 765.4 511 83.2
Ca_12466_v3 Cicer arietinum L. HOM05D004816 ORTHO05D006043 8.5e-208 727.2 519 78.2
Glyma.07G180000 Glycine max HOM05D004816 ORTHO05D006043 9.7e-204 713.8 513 79.1
Medtr1g034170 Medicago truncatula HOM05D004816 ORTHO05D006043 3.4e-201 705.3 514 78.0
Lalb_Chr10g0095411 Lupinus albus HOM05D004816 ORTHO05D006043 3.6e-198 695.3 518 75.3
Psat6g096400 Pisum sativum HOM05D004816 ORTHO05D006043 1.3e-195 686.8 520 73.7
arahy.Tifrunner.gnm1.ann1.D5RGK8 Arachis hypogaea HOM05D004816 ORTHO05D006043 8.5e-192 674.1 544 72.4
arahy.Tifrunner.gnm1.ann1.WD2X18 Arachis hypogaea HOM05D004816 ORTHO05D006043 2.1e-190 669.5 544 72.1
TPR.G18619 Trifolium pratense HOM05D004816 ORTHO05D006043 4.8e-187 658.3 524 72.3
GSVIVG01031842001 Vitis vinifera HOM05D004816 ORTHO05D006043 2.9e-168 595.9 512 65.8
Cfa004941 Carpinus fangiana HOM05D004816 ORTHO05D006043 1.1e-167 594.0 484 68.4
Dinv23600 Davidia involucrata HOM05D004816 ORTHO05D006043 4.2e-167 592.0 489 68.9
CSS0036891 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 9.8e-164 580.9 485 68.2
QL11p039002 Quercus lobata HOM05D004816 ORTHO05D006043 2.3e-160 569.7 481 64.2
QL11p040287 Quercus lobata HOM05D004816 ORTHO05D006043 3.8e-160 568.9 481 64.2
Duzib248G0025 Durio zibethinus HOM05D004816 ORTHO05D006043 1.9e-159 566.6 489 65.6
Atru.chr5.2842 Acer truncatum HOM05D004816 ORTHO05D006043 2.5e-159 566.2 512 62.9
CiPaw.06G139500 Carya illinoinensis HOM05D004816 ORTHO05D006043 3.3e-159 565.8 508 64.0
Thecc.02G094000 Theobroma cacao HOM05D004816 ORTHO05D006043 4.3e-159 565.5 489 65.8
Nn6g32127 Nelumbo nucifera HOM05D004816 ORTHO05D006043 2.9e-155 552.7 513 62.4
COL.COLO4_11733 Corchorus olitorius HOM05D004816 ORTHO05D006043 7.0e-154 548.1 473 65.3
Duzib132G0866 Durio zibethinus HOM05D004816 ORTHO05D006043 7.8e-153 544.7 489 63.8
Manes.17G095600 Manihot esculenta HOM05D004816 ORTHO05D006043 3.3e-151 539.3 484 65.5
TWI31G1354 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 4.7e-150 535.4 524 60.5
TAR625G0829 Trochodendron aralioides HOM05D004816 ORTHO05D006043 6.2e-150 535.0 516 60.7
CANSAT25G1860 Cannabis sativa HOM05D004816 ORTHO05D006043 1.1e-149 534.3 522 61.1
Potri.009G107800 Populus trichocarpa HOM05D004816 ORTHO05D006043 1.1e-149 534.3 467 66.2
MD10G1088000 Malus domestica HOM05D004816 ORTHO05D006043 1.4e-149 533.9 516 62.4
Carub.0003s2975 Capsella rubella HOM05D004816 ORTHO05D006043 5.2e-149 531.9 512 60.7
MBI16_g31473_MAGBIO Magnolia biondii HOM05D004816 ORTHO05D006043 5.2e-149 531.9 522 60.2
Gohir.D12G026300 Gossypium hirsutum HOM05D004816 ORTHO05D006043 8.9e-149 531.2 514 60.7
Aa31LG8G13390 Aethionema arabicum HOM05D004816 ORTHO05D006043 4.4e-148 528.9 510 60.6
Gohir.A12G026800 Gossypium hirsutum HOM05D004816 ORTHO05D006043 4.4e-148 528.9 499 61.1
Gorai.008G026600 Gossypium raimondii HOM05D004816 ORTHO05D006043 1.3e-147 527.3 514 60.3
Sp3g29160 Schrenkiella parvula HOM05D004816 ORTHO05D006043 2.2e-147 526.6 527 59.2
AT2G15860 Arabidopsis thaliana HOM05D004816 ORTHO05D006043 2.9e-147 526.2 512 60.4
BcaC01g03051 Brassica carinata HOM05D004816 ORTHO05D006043 2.9e-147 526.2 508 60.6
C03p56660 Brassica napus HOM05D004816 ORTHO05D006043 2.9e-147 526.2 508 60.6
Actinidia17843 Actinidia chinensis HOM05D004816 ORTHO05D006043 3.7e-147 525.8 472 63.6
Haze_02469 Corylus avellana HOM05D004816 ORTHO05D006043 3.7e-147 525.8 577 55.5
AL3G47650 Arabidopsis lyrata HOM05D004816 ORTHO05D006043 4.9e-147 525.4 521 59.9
Lj5A205G67 Lonicera japonica HOM05D004816 ORTHO05D006043 4.9e-147 525.4 497 61.4
Lj2g0017153 Lotus japonicus HOM05D004816 ORTHO05D001172 1.4e-146 523.9 363 79.3
Sopen01g051090 Solanum pennellii HOM05D004816 ORTHO05D006043 2.4e-146 523.1 506 59.5
PGSC0003DMG402025925 Solanum tuberosum HOM05D004816 ORTHO05D006043 7.0e-146 521.5 520 58.5
Aqoxy6G00919 Aquilegia oxysepala HOM05D004816 ORTHO05D006043 2.0e-145 520.0 485 62.1
PSO675G8525 Papaver somniferum HOM05D004816 ORTHO05D006043 2.7e-145 519.6 515 59.6
MSTRG.20129 Avicennia marina HOM05D004816 ORTHO05D006043 3.5e-145 519.2 512 59.2
Solyc01g108890.3 Solanum lycopersicum HOM05D004816 ORTHO05D006043 3.5e-145 519.2 506 58.9
Sabra09G0082300 Salix brachista HOM05D004816 ORTHO05D006043 7.8e-145 518.1 488 63.1
BcaB08g34612 Brassica carinata HOM05D004816 ORTHO05D006043 5.0e-144 515.4 516 58.5
BolC3t17950H Brassica oleracea HOM05D004816 ORTHO05D006043 1.1e-143 514.2 528 58.3
MELO3C018421.2 Cucumis melo HOM05D004816 ORTHO05D006043 1.1e-143 514.2 511 59.9
Eucgr.I01207 Eucalyptus grandis HOM05D004816 ORTHO05D006043 1.5e-143 513.8 478 61.3
PSO541G0848 Papaver somniferum HOM05D004816 ORTHO05D006043 3.3e-143 512.7 515 59.6
Rhsim05G0079600 Rhododendron simsii HOM05D004816 ORTHO05D006043 4.3e-143 512.3 510 59.0
BcaC06g36093 Brassica carinata HOM05D004816 ORTHO05D006043 1.1e-141 507.7 514 58.0
MD05G1073700 Malus domestica HOM05D004816 ORTHO05D006043 3.1e-141 506.1 505 60.8
THA.LOC104819592 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 3.1e-141 506.1 479 61.4
Ciclev10028431m.g Citrus clementina HOM05D004816 ORTHO05D006043 4.0e-141 505.8 456 62.9
SGA_v2.0_scaffold58G20600 Striga asiatica HOM05D004816 ORTHO05D006043 6.8e-141 505.0 517 59.2
BcaB03g16336 Brassica carinata HOM05D004816 ORTHO05D006043 1.2e-140 504.2 524 57.3
CsaV3_7G010070 Cucumis sativus L. HOM05D004816 ORTHO05D006043 1.5e-140 503.8 515 58.6
BraA07t28285Z Brassica rapa HOM05D004816 ORTHO05D006043 2.0e-140 503.4 528 56.8
BraA03t13693Z Brassica rapa HOM05D004816 ORTHO05D006043 3.4e-140 502.7 519 57.4
THA.LOC104807346 Tarenaya hassleriana HOM05D004816 ORTHO05D006043 3.4e-140 502.7 509 59.9
Nitab4.5_0009440g0020 Nicotiana tabacum HOM05D004816 ORTHO05D006043 5.8e-140 501.9 533 56.3
A03p45610 Brassica napus HOM05D004816 ORTHO05D006043 1.7e-139 500.4 525 57.1
C07p07890 Brassica napus HOM05D004816 ORTHO05D006043 2.9e-139 499.6 524 56.9
BolC7t41207H Brassica oleracea HOM05D004816 ORTHO05D006043 2.9e-139 499.6 524 56.9
FvH4_2g07090 Fragaria vesca HOM05D004816 ORTHO05D006043 3.7e-139 499.2 415 66.5
PGSC0003DMG400006219 Solanum tuberosum HOM05D004816 ORTHO05D006043 4.9e-139 498.8 484 58.5
Actinidia27933 Actinidia chinensis HOM05D004816 ORTHO05D006043 3.2e-138 496.1 471 61.1
CARHR106200 Cardamine hirsuta HOM05D004816 ORTHO05D006043 3.2e-138 496.1 524 56.5
MSTRG.16772 Avicennia marina HOM05D004816 ORTHO05D006043 1.2e-137 494.2 515 57.9
Peaxi162Scf00003g02043 Petunia axillaris HOM05D004816 ORTHO05D006043 1.3e-136 490.7 483 57.8
ClCG02G005580 Citrullus lanatus HOM05D004816 ORTHO05D006043 3.0e-136 489.6 513 57.9
Sed0008645 Sechium edule HOM05D004816 ORTHO05D006043 3.9e-136 489.2 474 59.9
PGR142G0866 Punica granatum HOM05D004816 ORTHO05D006043 9.5e-135 484.6 524 56.7
SalBow6G5269 Salvia bowleyana HOM05D004816 ORTHO05D006043 2.1e-134 483.4 518 56.4
Thhalv10022638m.g Eutrema salsugineum HOM05D004816 ORTHO05D006043 3.6e-134 482.6 553 53.9
vmacro19471 Vaccinium macrocarpon HOM05D004816 ORTHO05D006043 2.6e-132 476.5 491 57.8
DCAR_022069 Daucus carota HOM05D004816 ORTHO05D006043 3.4e-132 476.1 453 61.4
Migut.B00299 Erythranthe guttata HOM05D004816 ORTHO05D006043 5.8e-132 475.3 521 55.3
AUR62011413 Chenopodium quinoa HOM05D004816 ORTHO05D006043 5.4e-130 468.8 478 57.5
AUR62016646 Chenopodium quinoa HOM05D004816 ORTHO05D006043 3.5e-129 466.1 520 54.8
Nitab4.5_0001401g0100 Nicotiana tabacum HOM05D004816 ORTHO05D006043 3.5e-129 466.1 414 62.1
Nitab4.5_0013034g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 3.0e-128 463.0 471 57.7
FAN15G1865 Fragaria x ananassa HOM05D004816 ORTHO05D006043 1.9e-127 460.3 411 62.8
FAN27G2465 Fragaria x ananassa HOM05D004816 ORTHO05D006043 3.3e-127 459.5 411 62.8
Cc02_g18320 Coffea canephora HOM05D004816 ORTHO05D006043 4.3e-127 459.1 392 65.3
HanXRQChr10g0303411 Helianthus annuus HOM05D004816 ORTHO05D006043 4.3e-127 459.1 516 54.7
ATR0733G051 Amborella trichopoda HOM05D004816 ORTHO05D006043 7.3e-127 458.4 408 61.3
HPP92_019907 Vanilla planifolia HOM05D004816 ORTHO05D006043 1.5e-124 450.7 476 54.4
A07p04930 Brassica napus HOM05D004816 ORTHO05D006043 4.6e-121 439.1 392 61.5
CAN.G322.72 Capsicum annuum HOM05D004816 ORTHO05D006043 1.0e-120 438.0 391 62.1
ECA234G4099 Erigeron canadensis HOM05D004816 ORTHO05D006043 1.3e-120 437.6 407 60.7
Os03g0737900 Oryza sativa ssp. japonica HOM05D004816 ORTHO05D006043 3.0e-120 436.4 480 54.6
TAR381G0713 Trochodendron aralioides HOM05D004816 ORTHO05D006043 1.5e-119 434.1 388 64.4
Hund06195 Selenicereus undatus HOM05D004816 ORTHO05D006043 2.5e-119 433.3 418 59.6
EL10Ac9g21805 Beta vulgaris HOM05D004816 ORTHO05D006043 1.1e-117 427.9 521 52.2
Lsat_1_v5_gn_5_117600 Lactuca sativa HOM05D004816 ORTHO05D006043 2.4e-117 426.8 518 51.0
Haze_02467 Corylus avellana HOM05D004816 ORTHO05D006043 4.0e-117 426.0 424 58.3
FAN24G2332 Fragaria x ananassa HOM05D004816 ORTHO05D006043 5.8e-116 422.2 401 60.6
Zm00001eb056520 Zea mays HOM05D004816 ORTHO05D006043 9.3e-114 414.8 441 53.7
Prupe.8G114000 Prunus persica HOM05D004816 ORTHO05D006043 6.4e-107 392.1 480 53.3
QL06p000730 Quercus lobata HOM05D004816 ORTHO05D006043 9.6e-103 378.3 400 55.0
Cpa.g.sc62.70 Carica papaya HOM05D004816 ORTHO05D006043 1.6e-102 377.5 364 61.3
CDE06G1012 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 3.8e-99 366.3 377 53.3
Mapoly0087s0083 Marchantia polymorpha HOM05D004816 ORTHO05D006043 3.3e-95 353.2 488 45.3
unitig_21.g20758 Utricularia gibba HOM05D004816 ORTHO05D006043 2.2e-94 350.5 550 43.5
Pp3c4_2830 Physcomitrium patens HOM05D004816 ORTHO05D006043 3.2e-90 336.7 531 40.1
CDE04G3783 Ceratophyllum demersum HOM05D004816 ORTHO05D006043 1.1e-87 328.2 313 56.2
SMO347G0163 Selaginella moellendorffii HOM05D004816 ORTHO05D006043 1.1e-85 321.6 481 42.4
QL08p015136 Quercus lobata HOM05D004816 ORTHO05D000106 1.6e-81 307.8 275 61.5
QL08p015067 Quercus lobata HOM05D004816 ORTHO05D000106 2.1e-81 307.4 275 61.5
CSS0007305 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 1.8e-77 294.3 375 53.1
Nitab4.5_0005466g0040 Nicotiana tabacum HOM05D004816 ORTHO05D006043 9.1e-77 292.0 325 55.1
SEGI_09196 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 9.1e-77 292.0 287 55.7
RcHm_v2.0_Chr6g0259581 Rosa chinensis HOM05D004816 ORTHO05D006043 1.5e-76 291.2 273 64.1
AagrBONN_evm.TU.Sc2ySwM_228.2260 Anthoceros agrestis HOM05D004816 ORTHO05D006043 8.2e-70 268.9 512 38.9
Sc08g0000210 Simmondsia chinensis HOM05D004816 ORTHO05D006043 2.0e-68 264.2 234 61.1
Oeu021929.4 Olea europaea HOM05D004816 ORTHO05D006043 2.6e-68 263.8 307 52.4
SHI18146 Sapria himalayana HOM05D004816 ORTHO05D006043 5.2e-64 249.6 541 37.5
CSS0019035 Camellia sinensis var. sinensis HOM05D004816 ORTHO05D006043 2.5e-58 230.7 331 51.4
RcHm_v2.0_Chr6g0259571 Rosa chinensis HOM05D004816 ORTHO05D006043 2.0e-52 211.1 178 66.9
Dinv42115 Davidia involucrata HOM05D004816 ORTHO05D000337 6.6e-51 206.1 478 35.6
Sc08g0000220 Simmondsia chinensis HOM05D004816 ORTHO05D006043 8.3e-46 189.1 162 64.2
Manes.15G144501 Manihot esculenta HOM05D004816 ORTHO05D006043 9.2e-45 185.7 223 57.0
Cpa.g.sc62.69 Carica papaya HOM05D004816 ORTHO05D006043 1.4e-40 171.8 144 64.6
Nitab4.5_0000876g0230 Nicotiana tabacum HOM05D000224 ORTHO05D000337 2.4e-37 161.0 160 56.2
TWI79G0508 Tripterygium wilfordii HOM05D004816 ORTHO05D006043 2.5e-26 124.4 106 62.3
Lsat_1_v5_gn_4_68061 Lactuca sativa HOM05D004816 ORTHO05D006043 1.6e-25 121.7 179 46.9
Oeu057669.2 Olea europaea HOM05D004816 ORTHO05D006043 1.6e-25 121.7 188 47.9
Gohir.A01G005566 Gossypium hirsutum HOM05D004816 ORTHO05D006043 2.0e-23 114.8 127 50.4
SEGI_20581 Sequoiadendron giganteum HOM05D004816 ORTHO05D006043 3.4e-23 114.0 134 54.5
Atru.chr13.510 Acer truncatum HOM05D004816 ORTHO05D006043 4.4e-23 113.6 107 60.7
Atru.chr8.2607 Acer truncatum HOM05D004816 ORTHO05D006043 4.4e-23 113.6 107 60.7
arahy.Tifrunner.gnm1.ann1.JF64TB Arachis hypogaea HOM05D004816 ORTHO05D006043 2.4e-21 107.8 148 55.4
arahy.Tifrunner.gnm1.ann1.MV8GC5 Arachis hypogaea HOM05D004816 ORTHO05D006043 6.0e-20 103.2 125 60.0
Lsat_1_v5_gn_4_111080 Lactuca sativa HOM05D004816 ORTHO05D006043 5.1e-19 100.1 196 39.3
Psat0s2233g0240 Pisum sativum HOM05D004816 ORTHO05D006043 3.3e-18 97.4 107 55.1
Atru.chr8.2606 Acer truncatum HOM05D004816 ORTHO05D006043 4.4e-15 87.0 57 71.9
CSS0032400 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 1.3e-14 85.5 154 42.2
DCAR_015855 Daucus carota HOM05D004816 ORTHO05D006043 8.4e-14 82.8 97 54.6
Duzib052G0890 Durio zibethinus HOM05D004816 ORTHO05D006043 8.4e-14 82.8 71 63.4
Actinidia00469 Actinidia chinensis HOM05D004816 ORTHO05D006043 6.6e-11 73.2 76 55.3
CSS0045496 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 7.3e-10 69.7 153 38.6
Sopen01g051070 Solanum pennellii HOM05D004816 ORTHO05D006043 4.8e-09 67.0 92 43.5
CSS0009254 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 1.8e-08 65.1 148 35.8
Sabra01G0122300 Salix brachista HOM05D000001 ORTHO05D004986 1.5e-07 62.0 98 48.0
CSS0049387 Camellia sinensis var. sinensis HOM05D001016 ORTHO05D016153 9.9e-07 59.3 145 34.5


User provided reference genes

Program Settings