Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G005000 Phaseolus vulgaris HOM05D006433 ORTHO05D005382 3.4e-136 488.4 262 100.0
VMungo0251G3481 Vigna mungo HOM05D006433 ORTHO05D005382 6.3e-82 308.1 253 70.0
Glyma.09G282600 Glycine max HOM05D006433 ORTHO05D005382 4.8e-58 228.8 268 58.6
Medtr1g037520 Medicago truncatula HOM05D006433 ORTHO05D005382 4.3e-46 189.1 260 47.7
Lj2g0006429 Lotus japonicus HOM05D006433 ORTHO05D005382 2.2e-42 176.8 257 51.4
Psat6g135800 Pisum sativum HOM05D006433 ORTHO05D005382 6.4e-42 175.3 271 46.1
TPR.G39976 Trifolium pratense HOM05D006433 ORTHO05D005382 1.2e-37 161.0 265 45.7
Lalb_Chr10g0094961 Lupinus albus HOM05D006433 ORTHO05D005382 1.2e-35 154.5 261 47.9
Glyma.20G002800 Glycine max HOM05D006433 ORTHO05D005382 5.8e-35 152.1 271 45.0
arahy.Tifrunner.gnm1.ann1.0GGX7L Arachis hypogaea HOM05D006433 ORTHO05D005382 5.6e-30 135.6 245 44.5
arahy.Tifrunner.gnm1.ann1.X1AWTF Arachis hypogaea HOM05D006433 ORTHO05D005382 2.8e-21 106.7 242 38.4
Cfa008752 Carpinus fangiana HOM05D006433 ORTHO05D005382 5.8e-19 99.0 322 32.9
Duzib132G0593 Durio zibethinus HOM05D006433 ORTHO05D005382 2.9e-18 96.7 310 31.9
Duzib248G0841 Durio zibethinus HOM05D006433 ORTHO05D005382 1.1e-17 94.7 274 31.4
Thecc.02G159800 Theobroma cacao HOM05D006433 ORTHO05D005382 1.9e-17 94.0 78 59.0
Haze_11768 Corylus avellana HOM05D006433 ORTHO05D005382 2.7e-16 90.1 324 30.6
arahy.Tifrunner.gnm1.ann1.48DCIV Arachis hypogaea HOM05D056638 ORTHO05D005382 2.3e-15 87.0 299 32.1
COL.COLO4_03341 Corchorus olitorius HOM05D006433 ORTHO05D005382 3.0e-15 86.7 88 52.3
Nitab4.5_0002132g0010 Nicotiana tabacum HOM05D006433 ORTHO05D005382 1.9e-14 84.0 88 46.6
Gorai.008G148300 Gossypium raimondii HOM05D006433 ORTHO05D005382 4.3e-14 82.8 89 51.7
PGR142G2540 Punica granatum HOM05D006433 ORTHO05D005382 1.3e-13 81.3 84 48.8
TWI74G1071 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 1.3e-13 81.3 300 29.3
TAR371G0604 Trochodendron aralioides HOM05D006433 ORTHO05D005382 2.8e-13 80.1 109 43.1
Gohir.D12G137000 Gossypium hirsutum HOM05D006433 ORTHO05D005382 4.8e-13 79.3 91 50.5
Nitab4.5_0005356g0050 Nicotiana tabacum HOM05D006433 ORTHO05D005382 4.8e-13 79.3 90 44.4
Cc11_g02400 Coffea canephora HOM05D006433 ORTHO05D005382 6.2e-13 79.0 88 48.9
FAN07G1145 Fragaria x ananassa HOM05D006433 ORTHO05D005382 6.2e-13 79.0 143 40.6
Ciclev10031878m.g Citrus clementina HOM05D006433 ORTHO05D005382 8.1e-13 78.6 80 47.5
Lsat_1_v5_gn_3_35360 Lactuca sativa HOM05D006433 ORTHO05D005382 1.1e-12 78.2 120 40.0
Lj6A717T151 Lonicera japonica HOM05D006433 ORTHO05D005382 1.1e-12 78.2 86 46.5
ECA246G5167 Erigeron canadensis HOM05D006433 ORTHO05D005382 3.1e-12 76.6 100 43.0
FAN17G1725 Fragaria x ananassa HOM05D006433 ORTHO05D005382 4.0e-12 76.3 112 42.0
Gohir.A12G133500 Gossypium hirsutum HOM05D006433 ORTHO05D005382 4.0e-12 76.3 91 48.4
Nitab4.5_0000771g0160 Nicotiana tabacum HOM05D006433 ORTHO05D005382 4.0e-12 76.3 90 43.3
TWI77G0994 Tripterygium wilfordii HOM05D006433 ORTHO05D005382 5.3e-12 75.9 292 27.1
Gohir.A03G164900 Gossypium hirsutum HOM05D006433 ORTHO05D005382 6.9e-12 75.5 280 28.6
Gohir.D02G188100 Gossypium hirsutum HOM05D006433 ORTHO05D005382 9.0e-12 75.1 290 29.0
FvH4_4g36960 Fragaria vesca HOM05D006433 ORTHO05D005382 1.2e-11 74.7 115 41.7
FAN12G0758 Fragaria x ananassa HOM05D006433 ORTHO05D005382 1.2e-11 74.7 115 41.7
Gorai.005G210800 Gossypium raimondii HOM05D006433 ORTHO05D005382 1.2e-11 74.7 301 29.9
MD13G1005200 Malus domestica HOM05D006433 ORTHO05D005382 1.5e-11 74.3 92 42.4
Thhalv10005318m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 2.6e-11 73.6 98 41.8
Prupe.1G347600 Prunus persica HOM05D006433 ORTHO05D005382 2.6e-11 73.6 78 47.4
Sabra07G0060600 Salix brachista HOM05D006433 ORTHO05D005382 3.4e-11 73.2 123 37.4
TAR629G0072 Trochodendron aralioides HOM05D006433 ORTHO05D005382 3.4e-11 73.2 291 27.5
Sopen04g004420 Solanum pennellii HOM05D006433 ORTHO05D005382 4.4e-11 72.8 80 46.2
ATR0618G439 Amborella trichopoda HOM05D006433 ORTHO05D005382 5.8e-11 72.4 94 40.4
Eucgr.G02576 Eucalyptus grandis HOM05D006433 ORTHO05D005382 5.8e-11 72.4 87 49.4
RcHm_v2.0_Chr4g0446731 Rosa chinensis HOM05D006433 ORTHO05D005382 5.8e-11 72.4 138 37.0
Aa31LG11G2650 Aethionema arabicum HOM05D006433 ORTHO05D005382 9.9e-11 71.6 108 38.0
CiPaw.06G061400 Carya illinoinensis HOM05D006433 ORTHO05D005382 9.9e-11 71.6 334 26.0
MBI06_g16016_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 9.9e-11 71.6 95 43.2
Nn1g03826 Nelumbo nucifera HOM05D008701 ORTHO05D005382 1.3e-10 71.2 102 42.2
PGSC0003DMG400032563 Solanum tuberosum HOM05D006433 ORTHO05D005382 1.3e-10 71.2 81 44.4
A10p28440 Brassica napus HOM05D006433 ORTHO05D005382 1.7e-10 70.9 82 47.6
BraA10t44892Z Brassica rapa HOM05D006433 ORTHO05D005382 1.7e-10 70.9 82 47.6
BcaB07g29865 Brassica carinata HOM05D006433 ORTHO05D005382 2.2e-10 70.5 118 36.4
Glyma.11G100200 Glycine max HOM05D025712 ORTHO05D029749 2.2e-10 70.5 229 31.0
Manes.11G107400 Manihot esculenta HOM05D006433 ORTHO05D005382 2.2e-10 70.5 302 28.5
Carub.0006s2095 Capsella rubella HOM05D006433 ORTHO05D005382 2.9e-10 70.1 107 37.4
CARHR204930 Cardamine hirsuta HOM05D006433 ORTHO05D005382 2.9e-10 70.1 96 40.6
C09p68700 Brassica napus HOM05D006433 ORTHO05D005382 3.8e-10 69.7 82 46.3
BolC9t59616H Brassica oleracea HOM05D006433 ORTHO05D005382 3.8e-10 69.7 82 46.3
Thhalv10014452m.g Eutrema salsugineum HOM05D006433 ORTHO05D005382 3.8e-10 69.7 91 40.7
MBI03_g09362_MAGBIO Magnolia biondii HOM05D006433 ORTHO05D005382 3.8e-10 69.7 137 35.0
MD16G1002700 Malus domestica HOM05D006433 ORTHO05D005382 3.8e-10 69.7 92 41.3
AL6G18640 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 8.4e-10 68.6 81 43.2
Cpa.g.sc0.139 Carica papaya HOM05D006433 ORTHO05D005382 8.4e-10 68.6 286 25.9
CiPaw.05G169900 Carya illinoinensis HOM05D006433 ORTHO05D005382 8.4e-10 68.6 324 27.2
DCAR_002584 Daucus carota HOM05D006433 ORTHO05D005382 8.4e-10 68.6 86 44.2
Solyc04g009305.1 Solanum lycopersicum HOM05D006433 ORTHO05D005382 8.4e-10 68.6 127 32.3
C02p61000 Brassica napus HOM05D006433 ORTHO05D005382 1.1e-09 68.2 104 36.5
CARHR190370 Cardamine hirsuta HOM05D006433 ORTHO05D005382 1.1e-09 68.2 141 34.8
Migut.E00694 Erythranthe guttata HOM05D006433 ORTHO05D005382 1.1e-09 68.2 82 41.5
AT5G08240 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 1.4e-09 67.8 82 45.1
BolC2t12149H Brassica oleracea HOM05D006433 ORTHO05D005382 1.4e-09 67.8 104 36.5
Dinv08359 Davidia involucrata HOM05D012187 ORTHO05D005382 1.9e-09 67.4 78 47.4
BcaC03g18036 Brassica carinata HOM05D006433 ORTHO05D005382 2.4e-09 67.0 104 36.5
AUR62032989 Chenopodium quinoa HOM05D006433 ORTHO05D005382 3.2e-09 66.6 256 28.9
Duzib052G1245 Durio zibethinus HOM05D008701 ORTHO05D010238 4.2e-09 66.2 91 41.8
Sc06g0007710 Simmondsia chinensis HOM05D006433 ORTHO05D005382 4.2e-09 66.2 122 36.9
Manes.03G007400 Manihot esculenta HOM05D006433 ORTHO05D005382 5.4e-09 65.9 305 31.1
Actinidia13713 Actinidia chinensis HOM05D006433 ORTHO05D005382 7.1e-09 65.5 289 29.1
Carub.0006s0712 Capsella rubella HOM05D006433 ORTHO05D005382 7.1e-09 65.5 115 36.5
QL03p044176 Quercus lobata HOM05D006433 ORTHO05D005382 7.1e-09 65.5 77 46.8
Sabra16G0271700 Salix brachista HOM05D006433 ORTHO05D005382 7.1e-09 65.5 92 39.1
Sabra16G0276700 Salix brachista HOM05D006433 ORTHO05D005382 7.1e-09 65.5 92 39.1
DCAR_026896 Daucus carota HOM05D006433 ORTHO05D005382 9.3e-09 65.1 225 27.1
SGA_v2.0_scaffold6G03215 Striga asiatica HOM05D006433 ORTHO05D005382 9.3e-09 65.1 78 38.5
BraA02t09057Z Brassica rapa HOM05D006433 ORTHO05D005382 1.2e-08 64.7 111 36.0
TAR011G0003 Trochodendron aralioides HOM05D008701 ORTHO05D010238 1.2e-08 64.7 75 49.3
Potri.007G071900 Populus trichocarpa HOM05D006433 ORTHO05D005382 1.6e-08 64.3 310 26.8
A02p41140 Brassica napus HOM05D006433 ORTHO05D005382 2.1e-08 63.9 109 34.9
SalBow2G0414 Salvia bowleyana HOM05D006433 ORTHO05D005382 2.1e-08 63.9 136 33.1
DCAR_025546 Daucus carota HOM05D006433 ORTHO05D005382 4.6e-08 62.8 113 35.4
HPP92_022556 Vanilla planifolia HOM05D006433 ORTHO05D005382 4.6e-08 62.8 134 31.3
Actinidia09967 Actinidia chinensis HOM05D006433 ORTHO05D005382 6.0e-08 62.4 88 37.5
Actinidia38416 Actinidia chinensis HOM05D006433 ORTHO05D005382 6.0e-08 62.4 290 29.3
Sabra05G0076500 Salix brachista HOM05D006433 ORTHO05D005382 6.0e-08 62.4 119 35.3
Glyma.12G026100 Glycine max HOM05D025712 ORTHO05D029749 1.3e-07 61.2 226 35.4
Duzib213G0120 Durio zibethinus HOM05D013385 ORTHO05D005382 2.3e-07 60.5 85 40.0
Sp6g34710 Schrenkiella parvula HOM05D006433 ORTHO05D005382 3.9e-07 59.7 82 43.9
TWI39G0991 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 3.9e-07 59.7 74 40.5
AUR62017700 Chenopodium quinoa HOM05D006433 ORTHO05D005382 5.1e-07 59.3 257 27.6
Potri.001G408900 Populus trichocarpa HOM05D006433 ORTHO05D005382 5.1e-07 59.3 85 38.8
TWI36G1014 Tripterygium wilfordii HOM05D008701 ORTHO05D010238 5.1e-07 59.3 63 49.2
TAR626G1447 Trochodendron aralioides HOM05D008701 ORTHO05D010238 5.1e-07 59.3 116 37.1
AT5G23160 Arabidopsis thaliana HOM05D006433 ORTHO05D005382 6.6e-07 58.9 265 28.3
Potri.005G092400 Populus trichocarpa HOM05D006433 ORTHO05D005382 6.6e-07 58.9 312 26.6
Thecc.07G068900 Theobroma cacao HOM05D013385 ORTHO05D005382 6.6e-07 58.9 79 40.5
TWI38G1693 Tripterygium wilfordii HOM05D013385 ORTHO05D005382 8.7e-07 58.5 74 40.5
SEGI_06945 Sequoiadendron giganteum HOM05D020619 ORTHO05D005382 1.1e-06 58.2 102 38.2
Aqoxy5G03711 Aquilegia oxysepala HOM05D006433 ORTHO05D005382 1.5e-06 57.8 80 36.2
BcaB08g37272 Brassica carinata HOM05D006433 ORTHO05D005382 1.5e-06 57.8 65 46.2
AL6G34350 Arabidopsis lyrata HOM05D006433 ORTHO05D005382 1.9e-06 57.4 276 25.7
Duzib213G0682 Durio zibethinus HOM05D013385 ORTHO05D005382 2.5e-06 57.0 92 38.0
COL.COLO4_06754 Corchorus olitorius HOM05D008701 ORTHO05D010238 3.3e-06 56.6 128 30.5
Thecc.02G167700 Theobroma cacao HOM05D008701 ORTHO05D010238 3.3e-06 56.6 74 40.5
Dinv02575 Davidia involucrata HOM05D008701 ORTHO05D028399 4.3e-06 56.2 79 45.6
Peaxi162Scf01216g00009 Petunia axillaris HOM05D023859 ORTHO05D026030 4.3e-06 56.2 87 41.4
arahy.Tifrunner.gnm1.ann1.47L152 Arachis hypogaea HOM05D019215 ORTHO05D014071 5.6e-06 55.8 85 40.0
Gohir.D02G184600 Gossypium hirsutum HOM05D008701 ORTHO05D010238 7.3e-06 55.5 72 38.9
PSO541G2888 Papaver somniferum HOM05D008701 ORTHO05D010238 7.3e-06 55.5 88 36.4
SGA_v2.0_scaffold73G24324 Striga asiatica HOM05D012187 ORTHO05D005382 7.3e-06 55.5 77 45.5
HPP92_022555 Vanilla planifolia HOM05D049803 ORTHO05D051563 7.3e-06 55.5 94 37.2
MBI02_g25137_MAGBIO Magnolia biondii HOM05D008701 ORTHO05D010238 9.6e-06 55.1 90 38.9


User provided reference genes

Program Settings