Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 1.3e-111 406.4 199 100.0
Glyma.09G283200 Glycine max HOM05D006499 ORTHO05D007874 9.0e-81 303.9 199 75.4
Ca_05122_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 3.2e-78 295.4 197 73.1
Lalb_Chr04g0258971 Lupinus albus HOM05D006499 ORTHO05D007874 4.2e-78 295.0 196 74.5
Medtr1g038530 Medicago truncatula HOM05D006499 ORTHO05D007874 7.1e-78 294.3 194 72.2
Medtr1g037830 Medicago truncatula HOM05D006499 ORTHO05D007874 3.0e-76 288.9 194 71.6
Psat6g099520 Pisum sativum HOM05D006499 ORTHO05D007874 1.9e-75 286.2 190 72.6
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 1.0e-71 273.9 189 69.3
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 2.2e-71 272.7 193 71.5
Lsat_1_v5_gn_8_80081 Lactuca sativa HOM05D006499 ORTHO05D007874 3.8e-71 271.9 187 71.7
Nn4g24968 Nelumbo nucifera HOM05D006499 ORTHO05D007874 5.0e-71 271.6 190 68.4
Cc02_g20760 Coffea canephora HOM05D006499 ORTHO05D007874 6.5e-71 271.2 195 69.7
Oeu012342.1 Olea europaea HOM05D006499 ORTHO05D007874 6.5e-71 271.2 187 69.0
DCAR_026894 Daucus carota HOM05D006499 ORTHO05D007874 8.5e-71 270.8 196 69.4
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 8.5e-71 270.8 192 66.1
MSTRG.12232 Avicennia marina HOM05D006499 ORTHO05D007874 1.9e-70 269.6 189 68.3
Nitab4.5_0000069g0350 Nicotiana tabacum HOM05D006499 ORTHO05D007874 2.5e-70 269.2 189 68.8
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 3.2e-70 268.9 190 70.0
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 4.2e-70 268.5 188 69.1
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 4.2e-70 268.5 188 69.7
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 4.2e-70 268.5 192 65.1
Prupe.1G348500 Prunus persica HOM05D006499 ORTHO05D007874 5.5e-70 268.1 191 70.2
QL03p017736 Quercus lobata HOM05D006499 ORTHO05D007874 7.2e-70 267.7 191 70.7
Lalb_Chr10g0094911 Lupinus albus HOM05D006499 ORTHO05D007874 9.3e-70 267.3 186 70.4
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 1.2e-69 266.9 192 66.1
arahy.Tifrunner.gnm1.ann1.U0P7JC Arachis hypogaea HOM05D000717 ORTHO05D000555 1.6e-69 266.5 188 69.1
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 1.6e-69 266.5 191 68.6
QL03p017519 Quercus lobata HOM05D006499 ORTHO05D007874 1.6e-69 266.5 191 70.2
Rhsim05G0006600 Rhododendron simsii HOM05D006499 ORTHO05D007874 1.6e-69 266.5 190 67.9
vmacro04318 Vaccinium macrocarpon HOM05D006499 ORTHO05D007874 2.7e-69 265.8 194 67.0
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 6.1e-69 264.6 195 64.6
Ciclev10032745m.g Citrus clementina HOM05D006499 ORTHO05D007874 7.9e-69 264.2 196 66.8
Migut.H01291 Erythranthe guttata HOM05D006499 ORTHO05D007874 1.0e-68 263.8 189 65.6
Actinidia13714 Actinidia chinensis HOM05D006499 ORTHO05D007874 1.3e-68 263.5 184 70.1
TPR.G29797 Trifolium pratense HOM05D006499 ORTHO05D007874 1.3e-68 263.5 200 66.0
RcHm_v2.0_Chr4g0446811 Rosa chinensis HOM05D006499 ORTHO05D007874 1.8e-68 263.1 196 67.9
Aa31LG11G2680 Aethionema arabicum HOM05D006499 ORTHO05D007874 6.7e-68 261.2 194 66.5
Potri.003G003300 Populus trichocarpa HOM05D006499 ORTHO05D007874 8.7e-68 260.8 189 68.3
ECA236G1709 Erigeron canadensis HOM05D006499 ORTHO05D007874 1.1e-67 260.4 195 66.7
CANSAT01G2706 Cannabis sativa HOM05D006499 ORTHO05D007874 2.5e-67 259.2 195 67.7
BcaC03g18032 Brassica carinata HOM05D006499 ORTHO05D007874 3.3e-67 258.8 195 66.7
SGA_v2.0_scaffold49G18416 Striga asiatica HOM05D006499 ORTHO05D007874 7.4e-67 257.7 189 67.7
A02p41090 Brassica napus HOM05D006499 ORTHO05D007874 1.3e-66 256.9 195 66.7
C02p60950 Brassica napus HOM05D006499 ORTHO05D007874 1.3e-66 256.9 195 66.7
BolC2t12145H Brassica oleracea HOM05D006499 ORTHO05D007874 1.3e-66 256.9 195 66.7
THA.LOC104800852 Tarenaya hassleriana HOM05D006499 ORTHO05D007874 1.3e-66 256.9 200 65.0
BraA02t09053Z Brassica rapa HOM05D006499 ORTHO05D007874 2.2e-66 256.1 195 66.7
AUR62032973 Chenopodium quinoa HOM05D006499 ORTHO05D007874 2.2e-66 256.1 201 65.7
Aqoxy3G00285 Aquilegia oxysepala HOM05D006499 ORTHO05D007874 8.2e-66 254.2 189 64.6
MD16G1003500 Malus domestica HOM05D006499 ORTHO05D007874 8.2e-66 254.2 186 68.3
TAR622G1217 Trochodendron aralioides HOM05D006499 ORTHO05D007874 1.1e-65 253.8 199 63.8
BcaB07g29862 Brassica carinata HOM05D006499 ORTHO05D007874 1.4e-65 253.4 192 66.1
Sp2g23920 Schrenkiella parvula HOM05D006499 ORTHO05D007874 1.4e-65 253.4 202 64.9
Thecc.02G158700 Theobroma cacao HOM05D006499 ORTHO05D007874 1.4e-65 253.4 201 63.7
Duzib132G0016 Durio zibethinus HOM05D006499 ORTHO05D007874 6.9e-65 251.1 187 66.3
Thhalv10005281m.g Eutrema salsugineum HOM05D006499 ORTHO05D007874 9.1e-65 250.8 198 64.1
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 9.1e-65 250.8 195 63.1
arahy.Tifrunner.gnm1.ann1.BULB93 Arachis hypogaea HOM05D006499 ORTHO05D007874 1.2e-64 250.4 175 68.6
MELO3C011747.2 Cucumis melo HOM05D000045 ORTHO05D007874 1.2e-64 250.4 184 65.8
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 2.6e-64 249.2 190 63.7
EL10Ac9g22960 Beta vulgaris HOM05D006499 ORTHO05D007874 2.6e-64 249.2 204 64.2
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 7.7e-64 247.7 197 60.9
CARHR190310 Cardamine hirsuta HOM05D006499 ORTHO05D007874 1.0e-63 247.3 198 62.1
Cpa.g.sc92.93 Carica papaya HOM05D006499 ORTHO05D007874 1.0e-63 247.3 198 61.1
Sed0001124 Sechium edule HOM05D006499 ORTHO05D007874 1.3e-63 246.9 186 65.1
AT5G23230 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 2.9e-63 245.7 187 64.2
ClCG02G014040 Citrullus lanatus HOM05D006499 ORTHO05D007874 2.9e-63 245.7 190 64.7
FAN07G1092 Fragaria x ananassa HOM05D006499 ORTHO05D007874 2.9e-63 245.7 182 68.1
Gohir.A03G165200 Gossypium hirsutum HOM05D006499 ORTHO05D007874 3.8e-63 245.4 189 63.5
CsaV3_5G006120 Cucumis sativus L. HOM05D000045 ORTHO05D007874 5.0e-63 245.0 184 64.1
AT5G23220 Arabidopsis thaliana HOM05D006499 ORTHO05D007874 8.5e-63 244.2 192 62.0
Carub.0006s2100 Capsella rubella HOM05D006499 ORTHO05D007874 8.5e-63 244.2 189 62.4
Gohir.D02G188400 Gossypium hirsutum HOM05D006499 ORTHO05D007874 8.5e-63 244.2 189 63.0
Gorai.005G211100 Gossypium raimondii HOM05D006499 ORTHO05D007874 8.5e-63 244.2 189 63.0
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 1.9e-62 243.0 198 61.6
Os04g0525800 Oryza sativa ssp. japonica HOM05D006499 ORTHO05D007874 4.2e-62 241.9 185 64.3
FAN12G4256 Fragaria x ananassa HOM05D006499 ORTHO05D007874 5.5e-62 241.5 175 69.7
CSS0024171 Camellia sinensis var. sinensis HOM05D006499 ORTHO05D007874 9.4e-62 240.7 190 65.8
unitig_578.g16567 Utricularia gibba HOM05D006499 ORTHO05D007874 9.4e-62 240.7 187 63.1
Lj6P712T24 Lonicera japonica HOM05D006499 ORTHO05D007874 2.7e-61 239.2 169 69.2
Duzib132G0405 Durio zibethinus HOM05D006499 ORTHO05D007874 3.6e-61 238.8 189 62.4
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 7.9e-61 237.7 188 63.8
Lj6P717T75 Lonicera japonica HOM05D006499 ORTHO05D007874 1.0e-60 237.3 169 68.6
ATR0618G206 Amborella trichopoda HOM05D006499 ORTHO05D007874 1.4e-57 226.9 188 59.0
AUR62017708 Chenopodium quinoa HOM05D006499 ORTHO05D007874 1.8e-57 226.5 177 64.4
COL.COLO4_06169 Corchorus olitorius HOM05D006499 ORTHO05D007874 7.7e-56 221.1 168 65.5
AagrBONN_evm.TU.Sc2ySwM_344.3677 Anthoceros agrestis HOM05D006499 ORTHO05D007874 4.4e-51 205.3 188 54.8
SMO116G0488 Selaginella moellendorffii HOM05D006499 ORTHO05D007874 9.7e-51 204.1 183 56.3
Pp3c12_9010 Physcomitrium patens HOM05D006499 ORTHO05D007874 6.3e-50 201.4 184 56.0
Sc06g0006830 Simmondsia chinensis HOM05D006499 ORTHO05D007874 1.8e-49 199.9 145 67.6
GSVIVG01026240001 Vitis vinifera HOM05D006499 ORTHO05D007874 5.5e-46 188.3 199 53.3
SHI02178 Sapria himalayana HOM05D006499 ORTHO05D007874 1.0e-44 184.1 188 54.3
Mapoly0180s0008 Marchantia polymorpha HOM05D006499 ORTHO05D007874 1.8e-44 183.3 188 50.5
CBR_g16977 Chara braunii HOM05D006499 ORTHO05D007874 8.2e-42 174.5 194 48.5
TAR622G0494 Trochodendron aralioides HOM05D006499 ORTHO05D007874 1.3e-39 167.2 149 56.4
QL04p029592 Quercus lobata HOM05D006499 ORTHO05D007874 1.6e-32 143.7 93 74.2
CAN.G2.1 Capsicum annuum HOM05D006499 ORTHO05D007874 2.5e-30 136.3 83 78.3
SEGI_40434 Sequoiadendron giganteum HOM05D006499 ORTHO05D007874 4.2e-30 135.6 104 63.5
CAN.G655.2 Capsicum annuum HOM05D006499 ORTHO05D007874 3.6e-29 132.5 108 56.5
QL05p044270 Quercus lobata HOM05D000125 ORTHO05D007874 1.8e-28 130.2 84 75.0
arahy.Tifrunner.gnm1.ann1.YHJY2A Arachis hypogaea HOM05D006499 ORTHO05D007874 8.3e-26 121.3 82 72.0
Medtr1g037850 Medicago truncatula HOM05D006499 ORTHO05D007874 4.3e-22 109.0 93 60.2
Nn5g28518 Nelumbo nucifera HOM05D006499 ORTHO05D007874 2.6e-19 99.8 103 51.5
A03p62810 Brassica napus HOM05D006499 ORTHO05D007874 1.6e-16 90.5 73 60.3
BraA03t15356Z Brassica rapa HOM05D006499 ORTHO05D007874 1.6e-16 90.5 73 60.3
BcaC03g13135 Brassica carinata HOM05D006499 ORTHO05D007874 3.5e-16 89.4 71 62.0
PGR044G1944 Punica granatum HOM05D006499 ORTHO05D007874 1.7e-15 87.0 159 39.0
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 2.6e-11 73.2 169 30.2
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.9e-09 67.0 168 28.0
Cre17.g706800 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 3.2e-09 66.2 178 27.5
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 3.2e-09 66.2 165 28.5
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 7.0e-09 65.1 138 36.2
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 7.0e-09 65.1 156 27.6
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 3.5e-08 62.8 169 29.0
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 4.6e-08 62.4 169 29.6
Pp3s30_567 Physcomitrium patens HOM05D006499 ORTHO05D007874 4.6e-08 62.4 132 28.8
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 4.6e-08 62.4 184 28.8
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 6.0e-08 62.0 170 30.0
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 7.8e-08 61.6 169 29.0
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 7.8e-08 61.6 182 26.9
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 7.8e-08 61.6 182 26.9
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 1.3e-07 60.8 169 29.6
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 1.3e-07 60.8 176 26.7
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 1.7e-07 60.5 142 28.9
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 1.7e-07 60.5 169 27.2
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 2.3e-07 60.1 167 26.9
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 3.0e-07 59.7 169 30.2
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 3.0e-07 59.7 185 27.6
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 3.0e-07 59.7 171 28.7
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 5.0e-07 58.9 166 28.9
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 5.0e-07 58.9 170 28.2
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 5.0e-07 58.9 176 27.3
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 5.0e-07 58.9 168 29.2
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 5.0e-07 58.9 169 29.6
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 6.6e-07 58.5 172 26.7
Pp3s30_680 Physcomitrium patens HOM05D006499 ORTHO05D007874 8.6e-07 58.2 170 25.3
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 1.1e-06 57.8 169 26.0
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 1.5e-06 57.4 147 25.9
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.5e-06 57.4 173 27.7
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 1.5e-06 57.4 170 27.1
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.9e-06 57.0 162 27.8
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 1.9e-06 57.0 168 28.0
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 1.9e-06 57.0 172 26.7
Cre06.g305500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 2.5e-06 56.6 148 27.7
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 3.3e-06 56.2 165 27.9
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 3.3e-06 56.2 165 28.5
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 4.3e-06 55.8 166 27.1
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 4.3e-06 55.8 162 29.0
Nn6g33750 Nelumbo nucifera HOM05D006499 ORTHO05D007874 4.3e-06 55.8 49 46.9
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 5.6e-06 55.5 167 28.1
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 5.6e-06 55.5 165 27.3
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 5.6e-06 55.5 168 27.4
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 5.6e-06 55.5 174 25.9
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 9.5e-06 54.7 165 27.3
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 9.5e-06 54.7 169 26.6
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 9.5e-06 54.7 168 27.4


User provided reference genes

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