Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G003700 Phaseolus vulgaris HOM05D007869 ORTHO05D009962 6.0e-183 644.0 323 100.0
VMungo0251G2255 Vigna mungo HOM05D007869 ORTHO05D009962 1.1e-160 570.1 325 88.3
Glyma.20G001800 Glycine max HOM05D007869 ORTHO05D009962 7.3e-157 557.4 326 84.0
Glyma.09G283900 Glycine max HOM05D007869 ORTHO05D009962 5.3e-155 551.2 326 84.4
Lj2g0022280 Lotus japonicus HOM05D007869 ORTHO05D009962 1.1e-139 500.4 331 77.0
Lalb_Chr17g0337801 Lupinus albus HOM05D007869 ORTHO05D009962 1.5e-133 479.9 324 74.4
Lalb_Chr04g0258981 Lupinus albus HOM05D007869 ORTHO05D009962 4.5e-130 468.4 324 74.1
Medtr1g038260 Medicago truncatula HOM05D007869 ORTHO05D009962 6.5e-129 464.5 316 74.4
TPR.G29782 Trifolium pratense HOM05D007869 ORTHO05D009962 1.6e-127 459.9 321 72.3
Psat6g099760 Pisum sativum HOM05D007869 ORTHO05D009962 3.4e-122 442.2 306 73.9
Prupe.2G203300 Prunus persica HOM05D007869 ORTHO05D009962 2.0e-106 389.8 295 65.8
CANSAT56G0171 Cannabis sativa HOM05D007869 ORTHO05D009962 6.5e-105 384.8 303 63.0
Atru.chr5.803 Acer truncatum HOM05D007869 ORTHO05D009962 1.9e-104 383.3 304 63.5
CiPaw.02G045900 Carya illinoinensis HOM05D007869 ORTHO05D009962 5.5e-104 381.7 296 66.2
Duzib138G0629 Durio zibethinus HOM05D007869 ORTHO05D009962 5.5e-104 381.7 289 65.4
Thecc.01G330400 Theobroma cacao HOM05D007869 ORTHO05D009962 2.1e-103 379.8 289 65.4
Cfa003717 Carpinus fangiana HOM05D007869 ORTHO05D009962 1.8e-102 376.7 305 63.3
Haze_15765 Corylus avellana HOM05D007869 ORTHO05D009962 2.3e-102 376.3 305 63.6
Ciclev10021277m.g Citrus clementina HOM05D007869 ORTHO05D009962 8.8e-102 374.4 294 62.9
Potri.014G108300 Populus trichocarpa HOM05D007869 ORTHO05D009962 3.7e-100 369.0 289 60.2
Sabra14G0079800 Salix brachista HOM05D007869 ORTHO05D009962 3.7e-100 369.0 290 61.7
Manes.05G005500 Manihot esculenta HOM05D007869 ORTHO05D009962 1.8e-99 366.7 304 59.5
RcHm_v2.0_Chr1g0361741 Rosa chinensis HOM05D007869 ORTHO05D009962 2.4e-99 366.3 310 60.0
Cpa.g.sc57.67 Carica papaya HOM05D007869 ORTHO05D009962 3.5e-98 362.5 288 62.2
Medtr1g038290 Medicago truncatula HOM05D007869 ORTHO05D009962 5.9e-98 361.7 310 61.9
Sabra02G0132700 Salix brachista HOM05D007869 ORTHO05D009962 2.9e-97 359.4 299 58.9
COL.COLO4_23074 Corchorus olitorius HOM05D007869 ORTHO05D009962 3.8e-97 359.0 295 59.7
TWI14G0946 Tripterygium wilfordii HOM05D007869 ORTHO05D009962 6.5e-97 358.2 307 60.3
TAR374G1227 Trochodendron aralioides HOM05D007869 ORTHO05D009962 1.0e-94 350.9 304 58.2
FAN06G2096 Fragaria x ananassa HOM05D007869 ORTHO05D009962 3.0e-94 349.4 304 57.9
Nn3g18755 Nelumbo nucifera HOM05D007869 ORTHO05D009962 3.0e-94 349.4 290 59.0
FAN10G0101 Fragaria x ananassa HOM05D007869 ORTHO05D009962 8.8e-94 347.8 302 58.9
FAN03G1443 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.7e-92 343.6 302 58.3
FAN03G2169 Fragaria x ananassa HOM05D007869 ORTHO05D009962 1.7e-92 343.6 302 58.3
FAN06G3475 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.0e-90 336.7 288 59.7
ClCG06G002380 Citrullus lanatus HOM05D007869 ORTHO05D009962 6.8e-86 321.6 278 56.8
CsaV3_6G008420 Cucumis sativus L. HOM05D007869 ORTHO05D009962 7.5e-85 318.2 272 55.9
Sc01g0002100 Simmondsia chinensis HOM05D007869 ORTHO05D009962 2.2e-84 316.6 296 53.4
arahy.Tifrunner.gnm1.ann1.WBP5Q2 Arachis hypogaea HOM05D007869 ORTHO05D009962 8.3e-84 314.7 300 57.3
arahy.Tifrunner.gnm1.ann1.2P25JP Arachis hypogaea HOM05D007869 ORTHO05D009962 1.2e-82 310.8 278 59.4
C05p01060 Brassica napus HOM05D007869 ORTHO05D009962 1.2e-82 310.8 295 52.9
THA.LOC104825914 Tarenaya hassleriana HOM05D007869 ORTHO05D009962 1.2e-82 310.8 288 53.1
BraA10t42381Z Brassica rapa HOM05D007869 ORTHO05D009962 3.5e-82 309.3 296 53.0
BcaC05g24607 Brassica carinata HOM05D007869 ORTHO05D009962 4.5e-82 308.9 289 52.9
BolC5t28887H Brassica oleracea HOM05D007869 ORTHO05D009962 5.9e-82 308.5 295 52.2
Sp1g01350 Schrenkiella parvula HOM05D007869 ORTHO05D009962 1.0e-81 307.8 296 54.1
Thhalv10009953m.g Eutrema salsugineum HOM05D007869 ORTHO05D009962 1.7e-81 307.0 295 52.2
A10p01030 Brassica napus HOM05D007869 ORTHO05D009962 1.1e-80 304.3 294 52.4
CARHR001570 Cardamine hirsuta HOM05D007869 ORTHO05D009962 7.3e-80 301.6 296 51.7
Sed0016589 Sechium edule HOM05D007869 ORTHO05D009962 4.0e-78 295.8 272 54.8
MBI04_g38990_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 8.9e-78 294.7 293 53.2
Carub.0001s0129 Capsella rubella HOM05D007869 ORTHO05D009962 1.2e-77 294.3 300 49.7
EL10Ac1g00161 Beta vulgaris HOM05D007869 ORTHO05D009962 9.8e-77 291.2 289 51.2
FAN01G2503 Fragaria x ananassa HOM05D007869 ORTHO05D009962 6.4e-76 288.5 255 56.5
FAN10G1242 Fragaria x ananassa HOM05D007869 ORTHO05D009962 2.4e-75 286.6 253 58.5
AUR62004577 Chenopodium quinoa HOM05D007869 ORTHO05D009962 4.1e-75 285.8 285 49.5
AUR62023523 Chenopodium quinoa HOM05D007869 ORTHO05D009962 9.2e-75 284.6 285 49.5
Actinidia28076 Actinidia chinensis HOM05D007869 ORTHO05D009962 1.7e-73 280.4 215 64.2
Aa31LG1G10230 Aethionema arabicum HOM05D007869 ORTHO05D009962 3.0e-73 279.6 289 49.5
AT2G41610 Arabidopsis thaliana HOM05D007869 ORTHO05D009962 3.0e-73 279.6 293 49.5
MELO3C022297.2 Cucumis melo HOM05D007869 ORTHO05D009962 3.0e-73 279.6 287 49.8
CSS0017560 Camellia sinensis var. sinensis HOM05D007869 ORTHO05D009962 5.6e-72 275.4 233 60.1
Ah.05g178800 Amaranthus hybridus HOM05D007869 ORTHO05D009962 2.1e-71 273.5 288 47.9
FvH4_7g18090 Fragaria vesca HOM05D007869 ORTHO05D009962 3.6e-71 272.7 209 65.1
AL4G39680 Arabidopsis lyrata HOM05D007869 ORTHO05D009962 2.3e-70 270.0 296 48.3
PSO384G3553 Papaver somniferum HOM05D007869 ORTHO05D009962 3.7e-68 262.7 345 45.5
HPP92_007374 Vanilla planifolia HOM05D007869 ORTHO05D009962 9.2e-67 258.1 284 46.5
ATR0579G134 Amborella trichopoda HOM05D007869 ORTHO05D009962 1.9e-64 250.4 309 46.9
Zm00001eb010960 Zea mays HOM05D007869 ORTHO05D009962 1.6e-63 247.3 286 45.1
Zm00001eb398460 Zea mays HOM05D007869 ORTHO05D009962 2.1e-63 246.9 284 45.4
Os03g0253600 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 6.2e-63 245.4 281 45.9
PSO135G1025 Papaver somniferum HOM05D007869 ORTHO05D009962 1.1e-62 244.6 326 44.8
Lju170C22T1 Lonicera japonica HOM05D007869 ORTHO05D009962 5.2e-62 242.3 220 56.8
MBI04_g27772_MAGBIO Magnolia biondii HOM05D007869 ORTHO05D009962 3.4e-61 239.6 231 52.8
Os10g0200700 Oryza sativa ssp. japonica HOM05D007869 ORTHO05D009962 4.1e-59 232.6 246 48.8
Gorai.004G148700 Gossypium raimondii HOM05D007869 ORTHO05D009962 1.6e-58 230.7 178 63.5
Gohir.D08G144000 Gossypium hirsutum HOM05D007869 ORTHO05D009962 2.7e-58 229.9 178 63.5
Gohir.A08G122700 Gossypium hirsutum HOM05D007869 ORTHO05D009962 6.0e-58 228.8 178 62.9
Rhsim01G0181500 Rhododendron simsii HOM05D007869 ORTHO05D009962 3.4e-53 213.0 180 55.6
FvH4_7g18120 Fragaria vesca HOM05D007869 ORTHO05D009962 2.7e-50 203.4 155 65.2
Dinv32655 Davidia involucrata HOM05D007869 ORTHO05D009962 3.6e-39 166.4 141 55.3
Duzib133G0538 Durio zibethinus HOM05D007869 ORTHO05D009962 1.8e-14 84.3 181 31.5
SEGI_25376 Sequoiadendron giganteum HOM05D007869 ORTHO05D009962 8.5e-12 75.5 112 42.0


User provided reference genes

Program Settings