Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 0.0e+00 1205.7 618 100.0
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 0.0e+00 1184.9 618 97.9
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 0.0e+00 1133.2 620 93.7
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 0.0e+00 1077.8 618 89.0
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 2.1e-311 1071.6 624 88.0
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 2.7e-309 1064.7 618 88.5
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 1.7e-303 1045.4 623 86.0
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 8.4e-303 1043.1 619 86.4
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 8.4e-303 1043.1 619 86.4
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 2.5e-302 1041.6 618 86.1
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 6.0e-301 1036.9 618 85.1
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 7.9e-301 1036.6 618 85.4
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 1.9e-299 1031.9 618 85.3
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 2.5e-299 1031.6 618 85.0
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.6e-298 1028.9 618 84.8
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 2.8e-298 1028.1 618 84.8
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 6.3e-298 1026.9 617 84.3
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 1.4e-297 1025.8 618 84.5
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 2.0e-296 1021.9 618 84.5
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.7e-295 1018.8 618 84.1
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.8e-295 1017.7 628 82.5
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.2e-294 1014.6 625 83.0
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 7.2e-294 1013.4 618 84.3
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 1.3e-292 1009.2 618 83.2
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 3.3e-291 1004.6 618 82.8
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 9.7e-291 1003.0 619 83.2
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 1.8e-289 998.8 618 82.7
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 5.3e-289 997.3 615 82.6
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 9.1e-289 996.5 618 82.4
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 1.1e-286 989.6 616 82.5
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 1.4e-286 989.2 615 81.6
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 3.6e-285 984.6 618 82.2
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.0e-284 983.0 618 81.2
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 1.4e-284 982.6 619 81.6
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 1.8e-284 982.2 619 81.6
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 8.8e-284 979.9 618 81.1
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 3.3e-283 978.0 618 81.6
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 3.3e-283 978.0 617 80.7
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 3.3e-283 978.0 618 80.7
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 4.4e-283 977.6 618 80.4
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 2.2e-282 975.3 642 79.0
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 1.8e-281 972.2 685 76.1
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 1.9e-278 962.2 621 79.4
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 1.9e-278 962.2 618 79.4
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 4.7e-277 957.6 657 76.7
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 5.7e-275 950.7 618 78.2
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 7.4e-275 950.3 579 85.1
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 1.7e-274 949.1 620 80.0
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 2.8e-274 948.3 616 78.1
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 3.5e-272 941.4 619 77.5
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 3.5e-272 941.4 614 77.4
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 1.7e-271 939.1 614 77.0
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 5.0e-271 937.6 624 80.0
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 2.1e-269 932.2 645 74.4
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 2.1e-269 932.2 611 76.9
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 3.6e-269 931.4 618 76.7
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 8.0e-269 930.2 617 76.8
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 2.3e-268 928.7 617 76.7
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 2.3e-268 928.7 617 77.0
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 6.7e-268 927.2 617 76.7
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 8.8e-268 926.8 617 76.5
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 1.5e-267 926.0 753 67.2
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 2.6e-267 925.2 617 76.8
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 8.2e-266 920.2 617 76.0
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 1.8e-265 919.1 610 75.9
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 2.7e-264 915.2 629 74.1
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 3.5e-264 914.8 618 75.6
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 1.0e-263 913.3 618 75.1
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 2.9e-263 911.8 650 73.1
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 3.6e-261 904.8 615 75.8
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 6.1e-261 904.0 617 75.5
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 1.0e-260 903.3 618 74.6
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 1.8e-260 902.5 616 72.9
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 1.5e-259 899.4 615 74.5
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 2.6e-259 898.7 615 74.3
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 3.5e-256 888.3 542 83.0
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 1.9e-254 882.5 615 74.1
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 1.2e-251 873.2 615 73.3
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 8.3e-250 867.1 617 72.8
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 9.2e-249 863.6 618 72.0
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 1.6e-248 862.8 575 76.3
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 2.7e-248 862.1 583 76.2
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 3.8e-247 858.2 633 71.1
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 8.6e-247 857.1 618 72.3
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 1.9e-246 855.9 600 72.8
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 3.3e-246 855.1 639 70.4
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 9.5e-246 853.6 517 82.8
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 6.8e-244 847.4 615 69.9
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 8.9e-244 847.0 602 72.1
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 3.4e-243 845.1 517 82.8
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 7.3e-238 827.4 616 70.3
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 2.7e-232 808.9 514 81.5
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 7.8e-232 807.4 616 66.6
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 2.0e-219 766.1 615 60.7
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 1.0e-215 753.8 447 86.4
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 7.6e-211 737.6 558 69.9
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.6e-208 729.9 620 58.9
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 3.0e-207 725.7 558 70.6
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 8.7e-207 724.2 469 77.8
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 1.1e-198 697.2 615 57.4
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 4.2e-185 652.1 649 51.6
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 2.2e-170 603.2 362 85.6
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.4e-161 573.9 396 79.0
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 1.9e-161 573.5 342 87.7
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 1.0e-159 567.8 487 66.9
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 1.8e-156 557.0 617 48.8
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 1.6e-155 553.9 360 80.3
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 6.3e-149 531.9 617 46.4
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 6.3e-133 478.8 364 66.8
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.2e-123 448.0 598 45.0
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 5.8e-118 429.1 511 43.2
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 8.9e-111 405.2 369 62.9
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 3.4e-110 403.3 282 77.7
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 1.3e-101 374.8 458 52.2
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 9.6e-73 278.9 175 79.4
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 4.5e-70 270.0 171 79.5
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 8.7e-66 255.8 188 64.4
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 4.8e-64 250.0 152 85.5
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 3.8e-61 240.4 134 91.0
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 8.5e-61 239.2 144 85.4
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 2.8e-48 197.6 119 79.8
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 1.4e-47 195.3 105 97.1
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 1.8e-47 194.9 151 66.9
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 3.2e-44 184.1 122 76.2
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 6.7e-42 176.4 107 78.5
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.5e-41 175.3 105 80.0
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 5.7e-41 173.3 135 65.2
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 6.3e-40 169.9 178 53.9
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 8.2e-40 169.5 100 90.0
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 7.0e-31 139.8 94 76.6
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.7e-30 137.9 74 97.3
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 2.3e-26 124.8 106 55.7
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 1.2e-25 122.5 59 93.2
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 1.2e-25 122.5 59 93.2
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 3.1e-23 114.4 86 69.8
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 8.6e-21 106.3 60 86.7
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 1.5e-20 105.5 58 81.0
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 5.5e-20 103.6 59 76.3
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 5.5e-20 103.6 59 76.3
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 1.6e-19 102.1 54 90.7
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 1.4e-18 99.0 76 64.5
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 2.3e-18 98.2 117 53.0
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 5.0e-13 80.5 56 60.7
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.9e-12 78.6 58 67.2
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 4.7e-11 73.9 44 65.9
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 4.0e-10 70.9 80 50.0
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 3.4e-09 67.8 61 59.0
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.1e-07 62.8 38 73.7


User provided reference genes

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