Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G002100 Phaseolus vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 2588.9 1326 100.0
VMungo0251G3136 Vigna mungo HOM05D004277 ORTHO05D005148 0.0e+00 2281.1 1326 88.7
Glyma.09G284900 Glycine max HOM05D004277 ORTHO05D005148 0.0e+00 2231.4 1349 85.6
Lj2g0013005 Lotus japonicus HOM05D004277 ORTHO05D005148 0.0e+00 1968.4 1361 76.2
Ca_12380_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1961.4 1368 75.0
Ca_12388_v3 Cicer arietinum L. HOM05D004277 ORTHO05D005148 0.0e+00 1961.4 1392 73.9
Psat6g100160 Pisum sativum HOM05D004277 ORTHO05D005148 0.0e+00 1952.6 1356 74.8
Medtr1g038850 Medicago truncatula HOM05D004277 ORTHO05D005148 0.0e+00 1907.5 1340 74.6
Lalb_Chr18g0046601 Lupinus albus HOM05D004277 ORTHO05D005148 0.0e+00 1865.1 1338 73.9
arahy.Tifrunner.gnm1.ann1.J7P8I0 Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1727.6 1535 62.5
arahy.Tifrunner.gnm1.ann1.3DGA3E Arachis hypogaea HOM05D004277 ORTHO05D005148 0.0e+00 1621.3 1587 58.7
GSVIVG01036797001 Vitis vinifera HOM05D004277 ORTHO05D005148 0.0e+00 1515.4 1370 60.3
Atru.chr1.126 Acer truncatum HOM05D004277 ORTHO05D005148 0.0e+00 1484.5 1362 59.1
CiPaw.11G062700 Carya illinoinensis HOM05D004277 ORTHO05D005148 0.0e+00 1478.8 1408 57.6
RcHm_v2.0_Chr5g0025751 Rosa chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1477.6 1366 58.6
QL12p004433 Quercus lobata HOM05D004277 ORTHO05D005148 0.0e+00 1469.9 1321 60.6
CANSAT80G1893 Cannabis sativa HOM05D004277 ORTHO05D005148 0.0e+00 1458.4 1381 58.0
FAN21G0666 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1458.4 1376 57.8
FAN16G3091 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1451.4 1376 57.5
FvH4_3g15310 Fragaria vesca HOM05D004277 ORTHO05D005148 0.0e+00 1449.9 1376 57.5
FAN11G0660 Fragaria x ananassa HOM05D004277 ORTHO05D005148 0.0e+00 1445.6 1380 57.5
COL.COLO4_05147 Corchorus olitorius HOM05D004277 ORTHO05D004634 0.0e+00 1441.0 1391 57.3
Gohir.D08G252532 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1434.9 1363 58.3
Gohir.A08G232300 Gossypium hirsutum HOM05D004277 ORTHO05D005148 0.0e+00 1424.5 1363 58.0
Potri.007G067700 Populus trichocarpa HOM05D004277 ORTHO05D005148 0.0e+00 1423.7 1361 57.4
vmacro11705 Vaccinium macrocarpon HOM05D004277 ORTHO05D005148 0.0e+00 1419.8 1435 54.8
CSS0042003 Camellia sinensis var. sinensis HOM05D004277 ORTHO05D005148 0.0e+00 1401.7 1374 57.6
Actinidia12771 Actinidia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1401.3 1348 57.4
TWI38G1370 Tripterygium wilfordii HOM05D004277 ORTHO05D005148 0.0e+00 1393.3 1373 55.9
Sabra07G0053700 Salix brachista HOM05D004277 ORTHO05D005148 0.0e+00 1388.2 1386 55.1
Ciclev10007189m.g Citrus clementina HOM05D004277 ORTHO05D005148 0.0e+00 1382.5 1360 56.8
CsaV3_7G022870 Cucumis sativus L. HOM05D004277 ORTHO05D005148 0.0e+00 1381.7 1357 55.6
Rhsim06G0241600 Rhododendron simsii HOM05D004277 ORTHO05D005148 0.0e+00 1378.2 1372 56.8
Sed0006880 Sechium edule HOM05D004277 ORTHO05D005148 0.0e+00 1356.3 1373 54.0
Aqoxy7G03893 Aquilegia oxysepala HOM05D004277 ORTHO05D005148 0.0e+00 1354.7 1385 53.8
PGR031G1415 Punica granatum HOM05D004277 ORTHO05D005148 0.0e+00 1349.3 1369 55.3
Nn3g21002 Nelumbo nucifera HOM05D004277 ORTHO05D005148 0.0e+00 1345.1 1386 53.5
ClCG09G022670 Citrullus lanatus HOM05D004277 ORTHO05D005148 0.0e+00 1344.3 1446 52.2
MELO3C012612.2 Cucumis melo HOM05D004277 ORTHO05D005148 0.0e+00 1336.2 1351 54.0
Eucgr.F04450 Eucalyptus grandis HOM05D004277 ORTHO05D005148 0.0e+00 1335.1 1391 53.3
Oeu019710.1 Olea europaea HOM05D004277 ORTHO05D005148 0.0e+00 1334.7 1376 54.1
PSO210G0403 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1330.5 1380 53.3
Aa31LG4G1820 Aethionema arabicum HOM05D004277 ORTHO05D005148 0.0e+00 1325.5 1344 54.3
Prupe.4G136200 Prunus persica HOM05D004277 ORTHO05D005148 0.0e+00 1318.9 1198 60.2
AT1G79190 Arabidopsis thaliana HOM05D004277 ORTHO05D005148 0.0e+00 1318.1 1350 54.1
AL2G39660 Arabidopsis lyrata HOM05D004277 ORTHO05D005148 0.0e+00 1305.0 1350 53.6
Cc05_g16300 Coffea canephora HOM05D004277 ORTHO05D005148 0.0e+00 1301.6 1358 53.1
Migut.H01674 Erythranthe guttata HOM05D004277 ORTHO05D005148 0.0e+00 1301.2 1334 53.7
Thhalv10018016m.g Eutrema salsugineum HOM05D004277 ORTHO05D005148 0.0e+00 1300.4 1355 53.1
Lj2A15G78 Lonicera japonica HOM05D004277 ORTHO05D005148 0.0e+00 1298.1 1322 55.1
HanXRQChr03g0078241 Helianthus annuus HOM05D004277 ORTHO05D005148 0.0e+00 1297.3 1337 53.9
Gorai.004G269300 Gossypium raimondii HOM05D004277 ORTHO05D005148 0.0e+00 1297.0 1372 54.3
Manes.03G176500 Manihot esculenta HOM05D004277 ORTHO05D005148 0.0e+00 1297.0 1394 52.8
ECA240G2290 Erigeron canadensis HOM05D004277 ORTHO05D005148 0.0e+00 1295.8 1333 54.0
PSO210G1337 Papaver somniferum HOM05D004277 ORTHO05D005148 0.0e+00 1295.4 1382 52.5
BcaB05g25178 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1281.2 1335 53.4
THA.LOC104812364 Tarenaya hassleriana HOM05D004277 ORTHO05D005148 0.0e+00 1279.6 1361 52.8
Solyc12g017280.2 Solanum lycopersicum HOM05D004277 ORTHO05D005148 0.0e+00 1278.5 1422 52.0
SalBow7G4120 Salvia bowleyana HOM05D004277 ORTHO05D005148 0.0e+00 1276.9 1409 51.2
Peaxi162Scf00006g01510 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1267.3 1378 53.7
BcaC03g15873 Brassica carinata HOM05D004277 ORTHO05D005148 0.0e+00 1258.0 1339 52.6
C02p36270 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1257.3 1339 52.6
Lsat_1_v5_gn_7_70840 Lactuca sativa HOM05D004277 ORTHO05D005148 0.0e+00 1256.9 1352 52.6
AUR62006227 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1256.5 1360 51.9
BolC2t09641H Brassica oleracea HOM05D004277 ORTHO05D005148 0.0e+00 1253.0 1341 52.5
BraA02t07267Z Brassica rapa HOM05D004277 ORTHO05D005148 0.0e+00 1250.0 1338 52.2
Sc06g0002790 Simmondsia chinensis HOM05D004277 ORTHO05D005148 0.0e+00 1247.6 1385 51.5
A02p22660 Brassica napus HOM05D004277 ORTHO05D005148 0.0e+00 1245.7 1338 52.2
Peaxi162Scf00078g01336 Petunia axillaris HOM05D004277 ORTHO05D005148 0.0e+00 1236.5 1495 50.2
EL10Ac2g03265 Beta vulgaris HOM05D004277 ORTHO05D005148 0.0e+00 1233.0 1363 51.8
SGA_v2.0_scaffold239G44031 Striga asiatica HOM05D004277 ORTHO05D005148 0.0e+00 1226.8 1421 49.5
Ah.02g131470 Amaranthus hybridus HOM05D004277 ORTHO05D005148 0.0e+00 1203.0 1377 50.1
MBI02_g15959_MAGBIO Magnolia biondii HOM05D004277 ORTHO05D005148 0.0e+00 1202.2 1345 51.2
ATR0763G037 Amborella trichopoda HOM05D004277 ORTHO05D005148 0.0e+00 1189.1 1401 48.5
Dinv19596 Davidia involucrata HOM05D004277 ORTHO05D005148 0.0e+00 1150.6 1107 56.8
AUR62036983 Chenopodium quinoa HOM05D004277 ORTHO05D005148 0.0e+00 1149.0 1362 49.4
DCAR_019921 Daucus carota HOM05D004277 ORTHO05D005148 0.0e+00 1140.2 1347 49.7
Zm00001eb224850 Zea mays HOM05D004277 ORTHO05D005148 0.0e+00 1078.9 1368 46.1
Nitab4.5_0000388g0130 Nicotiana tabacum HOM05D004277 ORTHO05D005148 2.7e-290 1002.7 1107 52.1
Sp5g34240 Schrenkiella parvula HOM05D004277 ORTHO05D005148 7.9e-290 1001.1 1011 53.6
CDE05G2591 Ceratophyllum demersum HOM05D004277 ORTHO05D005148 4.5e-277 958.7 1163 48.2
MD05G1224200 Malus domestica HOM05D004277 ORTHO05D005148 1.9e-275 953.4 1009 54.3
Haze_07825 Corylus avellana HOM05D004277 ORTHO05D005148 2.7e-274 949.5 1014 54.3
unitig_8.g4753 Utricularia gibba HOM05D004277 ORTHO05D005148 2.6e-248 863.2 1331 40.3
Nitab4.5_0009962g0010 Nicotiana tabacum HOM05D004277 ORTHO05D005148 1.3e-247 860.9 1028 50.1
TPR.G35532 Trifolium pratense HOM05D004277 ORTHO05D005148 2.9e-244 849.7 614 72.8
CARHR072840 Cardamine hirsuta HOM05D004277 ORTHO05D005148 1.7e-239 833.9 804 55.7
TAR626G0647 Trochodendron aralioides HOM05D004277 ORTHO05D005148 9.5e-227 791.6 838 54.2
Carub.0002s2606 Capsella rubella HOM05D004277 ORTHO05D005148 9.8e-224 781.6 712 58.3
Hma1.2p1_1054F.1_g252470 Hydrangea macrophylla HOM05D004277 ORTHO05D005148 6.6e-220 768.8 709 57.0
Sopen12g008100 Solanum pennellii HOM05D004277 ORTHO05D005148 1.4e-198 698.0 830 50.0
HPP92_021082 Vanilla planifolia HOM05D004277 ORTHO05D005148 6.6e-196 689.1 1330 36.8
Pp3c22_19900 Physcomitrium patens HOM05D004277 ORTHO05D005148 4.9e-191 672.9 1405 34.3
Sopen12g008110 Solanum pennellii HOM05D004277 ORTHO05D005148 2.0e-160 571.2 523 58.3
Mapoly0151s0022 Marchantia polymorpha HOM05D004277 ORTHO05D005148 2.8e-154 550.8 1371 30.9
Thecc.07G167700 Theobroma cacao HOM05D004277 ORTHO05D005148 5.5e-150 536.6 444 63.7
TAR626G1109 Trochodendron aralioides HOM05D004277 ORTHO05D005148 1.5e-147 528.5 444 61.5
CARHR072830 Cardamine hirsuta HOM05D004277 ORTHO05D005148 2.9e-135 487.6 544 51.3
Carub.0002s2605 Capsella rubella HOM05D004277 ORTHO05D005148 9.8e-131 472.6 536 51.9
SEGI_00999 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.1e-129 469.2 661 40.5
Haze_07823 Corylus avellana HOM05D004277 ORTHO05D005148 3.8e-127 460.7 356 67.1
Cpa.g.sc34.11 Carica papaya HOM05D004277 ORTHO05D005148 9.5e-126 456.1 385 62.3
AagrBONN_evm.TU.Sc2ySwM_228.3209 Anthoceros agrestis HOM05D004277 ORTHO05D005148 1.0e-119 436.0 971 34.1
TPR.G34228 Trifolium pratense HOM05D004277 ORTHO05D005148 4.4e-99 367.5 402 55.2
Nitab4.5_0009962g0020 Nicotiana tabacum HOM05D004277 ORTHO05D005148 6.2e-93 347.1 277 65.0
SEGI_07420 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 3.0e-87 328.2 472 39.0
Thecc.07G167800 Theobroma cacao HOM05D004277 ORTHO05D005148 9.6e-86 323.2 357 54.1
SEGI_33780 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 5.1e-79 300.8 443 41.5
Cc03_g14950 Coffea canephora HOM05D004277 ORTHO05D005148 2.6e-75 288.5 846 31.4
Cc00_g15170 Coffea canephora HOM05D004277 ORTHO05D005148 3.4e-75 288.1 551 38.5
MELO3C008303.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.9e-70 272.3 376 42.6
SEGI_06167 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.6e-64 252.7 443 36.8
SEGI_16544 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 1.2e-56 226.5 354 40.4
MD10G1205800 Malus domestica HOM05D004277 ORTHO05D005148 1.0e-55 223.4 220 55.9
MELO3C025974.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.8e-55 222.6 160 69.4
Cpa.g.sc34.5 Carica papaya HOM05D004277 ORTHO05D005148 1.5e-54 219.5 230 53.0
TPR.G40005 Trifolium pratense HOM05D004277 ORTHO05D005148 6.3e-53 214.2 147 74.1
Actinidia09631 Actinidia chinensis HOM05D004277 ORTHO05D005148 1.0e-50 206.8 131 74.8
MSTRG.12674 Avicennia marina HOM05D004277 ORTHO05D005148 3.2e-49 201.8 144 70.8
Os10g0575800 Oryza sativa ssp. japonica HOM05D004277 ORTHO05D005148 1.0e-47 196.8 227 49.8
Zm00001eb146320 Zea mays HOM05D004277 ORTHO05D005148 8.7e-47 193.7 254 44.5
MD05G1224300 Malus domestica HOM05D004277 ORTHO05D005148 1.9e-46 192.6 149 66.4
Cpa.g.sc34.4 Carica papaya HOM05D004277 ORTHO05D005148 4.3e-46 191.4 169 60.4
TAR624G0115 Trochodendron aralioides HOM05D004277 ORTHO05D005148 2.4e-44 185.7 179 54.7
MCO13G561 Micromonas commoda HOM05D004277 ORTHO05D005148 6.5e-42 177.6 1026 23.6
Zm00001eb372650 Zea mays HOM05D004277 ORTHO05D005148 7.2e-41 174.1 277 40.4
TPR.G23191 Trifolium pratense HOM05D003498 ORTHO05D005148 2.8e-37 162.2 574 28.9
PRCOL_00003205 Prasinoderma coloniale HOM05D004277 ORTHO05D005148 1.3e-34 153.3 1212 24.0
BcaB02g08672 Brassica carinata HOM05D004277 ORTHO05D005148 8.5e-34 150.6 168 50.0
CBR_g39748 Chara braunii HOM05D004277 ORTHO05D005148 2.5e-33 149.1 407 30.7
SHI21617 Sapria himalayana HOM05D004277 ORTHO05D005148 7.4e-30 137.5 133 54.9
PSO478G2881 Papaver somniferum HOM05D004277 ORTHO05D005148 4.8e-29 134.8 212 40.6
CBR_g39747 Chara braunii HOM05D004277 ORTHO05D005148 3.8e-26 125.2 311 29.3
Zm00001eb060300 Zea mays HOM05D004277 ORTHO05D005148 3.8e-26 125.2 135 49.6
MELO3C029569.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.6e-24 119.8 85 67.1
TPR.G28108 Trifolium pratense HOM05D004277 ORTHO05D005148 5.2e-23 114.8 88 70.5
CDE05G3501 Ceratophyllum demersum HOM05D003316 ORTHO05D003690 5.7e-22 111.3 96 58.3
MD10G1205500 Malus domestica HOM05D004277 ORTHO05D005148 1.4e-20 106.7 81 64.2
SHI21613 Sapria himalayana HOM05D004277 ORTHO05D002750 7.7e-19 100.9 203 35.0
MELO3C027882.2 Cucumis melo HOM05D004277 ORTHO05D005148 1.7e-18 99.8 124 50.0
SHI21614 Sapria himalayana HOM05D004277 ORTHO05D005148 1.7e-18 99.8 167 41.9
MD10G1205600 Malus domestica HOM05D004277 ORTHO05D005148 2.5e-17 95.9 61 67.2
TPR.G17466 Trifolium pratense HOM05D004277 ORTHO05D005148 9.4e-17 94.0 64 76.6
Zm00001eb307990 Zea mays HOM05D004277 ORTHO05D005148 9.4e-17 94.0 100 47.0
MD10G1205700 Malus domestica HOM05D004277 ORTHO05D005148 1.6e-16 93.2 106 54.7
TPR.G236 Trifolium pratense HOM05D004277 ORTHO05D005148 1.6e-16 93.2 51 88.2
Actinidia07382 Actinidia chinensis HOM05D004277 ORTHO05D005148 4.7e-16 91.7 160 38.8
Cpa.g.sc34.6 Carica papaya HOM05D004277 ORTHO05D005148 1.8e-15 89.7 98 50.0
Cre01.g039600 Chlamydomonas reinhardtii HOM05D004277 ORTHO05D005148 7.5e-14 84.3 520 24.8
Hma1.2p1_0148F.1_g065920 Hydrangea macrophylla HOM05D001726 ORTHO05D001761 2.2e-13 82.8 73 53.4
Zm00001eb269250 Zea mays HOM05D004277 ORTHO05D005148 1.1e-12 80.5 95 45.3
Thecc.08G194100 Theobroma cacao HOM05D004277 ORTHO05D005148 1.4e-12 80.1 65 61.5
SEGI_27653 Sequoiadendron giganteum HOM05D004277 ORTHO05D005148 2.0e-11 76.3 92 43.5
FAN06G0062 Fragaria x ananassa HOM05D016453 ORTHO05D017011 3.5e-11 75.5 159 37.1
FAN12G1216 Fragaria x ananassa HOM05D016453 ORTHO05D017011 4.5e-11 75.1 159 37.1
FvH4_7g12450 Fragaria vesca HOM05D016453 ORTHO05D017011 1.3e-10 73.6 99 46.5
FAN06G4064 Fragaria x ananassa HOM05D016453 ORTHO05D017011 2.9e-10 72.4 99 45.5
Zm00001eb307980 Zea mays HOM05D004277 ORTHO05D005148 2.5e-09 69.3 93 46.2
Zm00001eb329120 Zea mays HOM05D002219 ORTHO05D012612 2.8e-08 65.9 95 41.1
Actinidia07374 Actinidia chinensis HOM05D004277 ORTHO05D005148 6.1e-08 64.7 133 34.6
Zm00001eb086610 Zea mays HOM05D004277 ORTHO05D005148 8.0e-08 64.3 94 44.7
Actinidia07381 Actinidia chinensis HOM05D004277 ORTHO05D005148 3.0e-07 62.4 134 33.6
SHI21618 Sapria himalayana HOM05D004277 ORTHO05D005148 4.0e-07 62.0 71 50.7
Actinidia07375 Actinidia chinensis HOM05D004277 ORTHO05D005148 5.2e-07 61.6 140 29.3
QL04p080502 Quercus lobata HOM05D004277 ORTHO05D005148 7.5e-06 57.8 49 61.2


User provided reference genes

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