Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.5e-167 590.9 298 100.0
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.5e-153 545.0 272 99.6
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.5e-153 545.0 272 99.6
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.5e-153 545.0 272 99.6
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.5e-153 545.0 272 99.6
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 3.4e-140 501.9 272 93.0
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 1.1e-138 496.9 272 90.4
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 7.3e-135 484.2 272 89.3
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 5.1e-128 461.5 272 83.5
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 6.6e-128 461.1 272 83.5
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 7.3e-127 457.6 272 83.1
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 3.1e-125 452.2 273 82.1
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 5.2e-125 451.4 272 82.7
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 1.2e-124 450.3 272 82.0
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.2e-124 450.3 272 82.7
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 2.0e-124 449.5 274 82.1
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 2.6e-124 449.1 272 82.4
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 5.8e-124 448.0 272 83.5
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 2.2e-123 446.0 272 82.7
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 1.4e-122 443.4 273 81.7
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 2.4e-122 442.6 272 80.1
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 9.2e-122 440.7 273 81.7
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 2.1e-121 439.5 273 79.9
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 2.1e-121 439.5 272 79.4
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 2.7e-121 439.1 272 79.8
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 2.7e-121 439.1 273 81.7
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 2.3e-120 436.0 280 77.9
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 2.3e-120 436.0 272 78.7
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 3.0e-120 435.6 272 79.4
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 3.9e-120 435.3 272 80.9
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 1.1e-119 433.7 272 79.4
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 2.5e-119 432.6 273 80.2
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 4.3e-119 431.8 272 80.1
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 5.6e-119 431.4 272 79.8
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 5.6e-119 431.4 273 79.1
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.1e-118 429.5 273 79.1
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 2.8e-118 429.1 260 83.8
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 2.8e-118 429.1 273 79.5
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 4.7e-118 428.3 273 79.9
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 6.2e-118 427.9 279 77.4
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 6.2e-118 427.9 272 78.7
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.1e-117 427.2 272 79.4
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 1.1e-117 427.2 272 79.4
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 2.4e-117 426.0 272 78.7
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 2.4e-117 426.0 273 78.8
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 4.0e-117 425.2 276 77.9
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 4.0e-117 425.2 272 77.9
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 6.8e-117 424.5 273 78.8
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 8.9e-117 424.1 272 77.9
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 1.2e-116 423.7 272 77.9
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.5e-116 423.3 272 76.1
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 1.5e-116 423.3 263 80.6
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 4.4e-116 421.8 272 79.0
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 9.9e-116 420.6 276 77.5
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 1.3e-115 420.2 272 75.0
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 3.8e-115 418.7 272 76.1
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 6.4e-115 417.9 272 76.1
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 8.4e-115 417.5 272 75.7
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 8.4e-115 417.5 272 74.6
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 1.4e-114 416.8 272 76.1
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.9e-114 416.4 272 75.4
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 2.4e-114 416.0 272 75.0
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 2.4e-114 416.0 272 75.4
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 2.4e-114 416.0 272 74.6
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 3.2e-114 415.6 272 74.3
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 4.2e-114 415.2 274 73.7
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.2e-113 413.7 275 76.7
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 2.1e-113 412.9 273 74.7
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 3.5e-113 412.1 272 76.5
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 4.6e-113 411.8 272 75.0
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 4.6e-113 411.8 272 75.0
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 4.6e-113 411.8 272 75.0
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 7.8e-113 411.0 272 74.6
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.0e-112 410.6 287 73.5
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.0e-112 410.6 272 75.7
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 1.7e-112 409.8 272 74.6
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 2.3e-112 409.5 272 75.4
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 3.9e-112 408.7 272 74.6
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 5.1e-112 408.3 272 75.4
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 5.1e-112 408.3 272 74.3
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 5.1e-112 408.3 272 74.3
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 6.6e-112 407.9 272 75.0
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 6.6e-112 407.9 276 74.6
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 8.7e-112 407.5 272 76.5
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 1.1e-111 407.1 273 75.5
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 1.5e-111 406.8 271 73.8
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 1.5e-111 406.8 273 74.0
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 1.9e-111 406.4 272 75.7
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 3.3e-111 405.6 272 73.5
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 3.3e-111 405.6 272 76.1
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 5.6e-111 404.8 268 75.7
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 5.6e-111 404.8 272 75.0
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 5.6e-111 404.8 270 76.3
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 7.3e-111 404.4 272 74.3
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 9.6e-111 404.1 282 70.9
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 9.6e-111 404.1 272 75.4
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 9.6e-111 404.1 272 73.5
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 1.6e-110 403.3 272 74.6
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.1e-110 402.9 272 73.2
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 3.6e-110 402.1 272 74.6
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 6.2e-110 401.4 271 76.4
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.2e-108 397.1 266 76.3
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.0e-108 396.4 263 76.0
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.0e-108 396.4 263 76.0
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 3.4e-108 395.6 313 67.7
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 7.6e-108 394.4 291 70.8
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 1.3e-107 393.7 274 70.1
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 1.7e-107 393.3 261 74.7
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 1.1e-106 390.6 272 73.2
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 3.5e-105 385.6 272 72.8
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 1.3e-104 383.6 318 64.2
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.7e-104 383.3 272 67.6
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 3.0e-104 382.5 249 76.3
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 3.9e-104 382.1 273 71.8
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 4.3e-103 378.6 249 75.5
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 8.1e-102 374.4 272 66.5
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 1.1e-101 374.0 272 68.0
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 4.0e-101 372.1 278 68.0
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 9.0e-101 370.9 304 62.8
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 1.2e-100 370.5 272 70.2
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 2.6e-100 369.4 272 70.6
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 5.8e-100 368.2 273 71.4
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 9.9e-100 367.5 267 67.8
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 1.4e-98 363.6 296 66.2
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 5.5e-98 361.7 281 61.9
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 7.1e-98 361.3 287 61.0
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 2.1e-97 359.8 272 65.4
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 1.5e-95 353.6 253 72.3
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 6.2e-94 348.2 274 65.3
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 2.0e-92 343.2 273 62.6
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 1.1e-85 320.9 212 78.8
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.2e-84 317.4 157 98.1
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 1.1e-82 310.8 307 53.7
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 3.2e-82 309.3 212 76.4
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 1.2e-81 307.4 307 53.4
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 2.8e-78 296.2 196 77.6
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 5.0e-75 285.4 208 71.2
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 2.6e-71 273.1 210 67.6
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 4.8e-70 268.9 197 70.6
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 6.3e-70 268.5 211 72.5
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.4e-69 266.5 279 55.6
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 2.0e-68 263.5 205 68.8
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 1.4e-66 257.3 177 76.8
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 4.2e-66 255.8 202 65.3
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.6e-65 252.7 166 82.5
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.9e-64 249.2 127 98.4
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 1.1e-63 247.7 196 69.9
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 5.7e-63 245.4 231 59.7
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 2.0e-60 236.9 289 46.0
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 1.2e-57 227.6 244 52.0
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 4.5e-44 182.6 96 88.5
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 3.6e-41 172.9 251 46.6
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 3.0e-40 169.9 127 66.9
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.1e-34 151.4 273 36.6
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 1.2e-33 147.9 207 43.0
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.2e-31 141.4 63 98.4
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.2e-31 141.4 63 98.4
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 3.7e-30 136.3 115 63.5
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 1.1e-26 124.8 105 64.8
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 3.1e-24 116.7 97 64.9
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 1.5e-23 114.4 67 82.1
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 1.4e-21 107.8 65 87.7
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 3.2e-21 106.7 189 40.2
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 5.0e-19 99.4 65 75.4
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 4.3e-18 96.3 65 72.3
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 4.3e-18 96.3 65 72.3
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 3.4e-15 86.7 77 61.0
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 1.3e-14 84.7 42 83.3
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.4e-13 79.3 176 31.2
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 1.4e-08 64.7 152 35.5
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 5.2e-08 62.8 154 29.2


User provided reference genes

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