Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.003G000252 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 9.9e-286 986.1 499 100.0
Phvul.L009001 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 2.4e-284 981.5 500 99.8
Phvul.L001601 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 7.1e-284 979.9 500 99.6
VMungo0251G0454 Vigna mungo HOM05D003643 ORTHO05D005001 1.6e-264 915.6 500 93.6
Glyma.07G222900 Glycine max HOM05D003643 ORTHO05D005001 4.9e-253 877.5 491 90.2
Glyma.20G021900 Glycine max HOM05D003643 ORTHO05D005001 1.8e-250 869.0 495 89.3
Lj1g0022937 Lotus japonicus HOM05D003643 ORTHO05D005001 9.7e-241 836.6 500 84.0
Lj1g0023184 Lotus japonicus HOM05D003643 ORTHO05D005001 2.2e-240 835.5 500 84.0
Ca_18772_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 5.9e-238 827.4 503 82.9
Psat0s5231g0040 Pisum sativum HOM05D003643 ORTHO05D005001 7.9e-235 817.0 500 83.2
Cfa023544 Carpinus fangiana HOM05D003643 ORTHO05D005001 7.4e-233 810.4 486 82.7
arahy.Tifrunner.gnm1.ann1.PVMC8E Arachis hypogaea HOM05D003643 ORTHO05D005001 9.7e-233 810.1 498 81.9
Cpa.g.sc178.8 Carica papaya HOM05D003643 ORTHO05D005001 3.1e-231 805.1 499 81.6
Lalb_Chr16g0385301 Lupinus albus HOM05D003643 ORTHO05D005001 2.6e-230 802.0 501 81.6
Atru.chr1.1970 Acer truncatum HOM05D003643 ORTHO05D005001 3.5e-230 801.6 492 81.5
CiPaw.03G114100 Carya illinoinensis HOM05D003643 ORTHO05D005001 7.7e-230 800.4 498 80.5
Psat6g043080 Pisum sativum HOM05D003643 ORTHO05D005001 2.5e-228 795.4 500 81.4
TPR.G20995 Trifolium pratense HOM05D003643 ORTHO05D005001 2.7e-227 792.0 495 80.6
Potri.004G075600 Populus trichocarpa HOM05D003643 ORTHO05D005001 1.8e-226 789.3 501 79.8
MD05G1254800 Malus domestica HOM05D003643 ORTHO05D005001 2.3e-226 788.9 490 80.2
Dinv35809 Davidia involucrata HOM05D003643 ORTHO05D005001 5.2e-226 787.7 488 81.4
TWI77G0757 Tripterygium wilfordii HOM05D003643 ORTHO05D005001 2.0e-225 785.8 494 81.2
MD10G1234900 Malus domestica HOM05D003643 ORTHO05D005001 1.7e-224 782.7 490 79.2
Lj1g0023481 Lotus japonicus HOM05D003643 ORTHO05D005001 4.1e-223 778.1 500 79.6
PGR083G1065 Punica granatum HOM05D003643 ORTHO05D005001 4.1e-223 778.1 498 79.5
Prupe.4G109100 Prunus persica HOM05D003643 ORTHO05D005001 9.1e-223 776.9 491 78.6
Medtr4g083780 Medicago truncatula HOM05D003643 ORTHO05D005001 2.6e-222 775.4 482 81.1
Sed0017297 Sechium edule HOM05D003643 ORTHO05D005001 4.5e-222 774.6 480 80.6
CANSAT21G2447 Cannabis sativa HOM05D003643 ORTHO05D005001 8.5e-221 770.4 494 78.5
CsaV3_1G046560 Cucumis sativus L. HOM05D003643 ORTHO05D005001 1.1e-220 770.0 482 80.7
Eucgr.D01040 Eucalyptus grandis HOM05D003643 ORTHO05D005001 3.2e-220 768.5 494 78.1
GSVIVG01012096001 Vitis vinifera HOM05D003643 ORTHO05D005001 5.5e-220 767.7 479 80.4
Actinidia22386 Actinidia chinensis HOM05D003643 ORTHO05D005001 1.2e-219 766.5 485 79.2
Oeu060347.1 Olea europaea HOM05D003643 ORTHO05D005001 1.2e-219 766.5 478 79.3
arahy.Tifrunner.gnm1.ann1.EU78CH Arachis hypogaea HOM05D003643 ORTHO05D005001 1.6e-219 766.1 498 79.1
Sabra04G0050300 Salix brachista HOM05D003643 ORTHO05D005001 4.7e-219 764.6 501 78.2
CSS0044821 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 5.2e-218 761.1 499 76.8
THA.LOC104822105 Tarenaya hassleriana HOM05D003643 ORTHO05D005001 8.8e-218 760.4 476 79.4
FvH4_3g12070 Fragaria vesca HOM05D003643 ORTHO05D005001 2.0e-217 759.2 496 77.2
MELO3C021772.2 Cucumis melo HOM05D003643 ORTHO05D005001 2.6e-217 758.8 482 79.9
Cc09_g06330 Coffea canephora HOM05D003643 ORTHO05D005001 3.4e-217 758.4 493 78.1
Sc22g0000430 Simmondsia chinensis HOM05D003643 ORTHO05D005001 3.4e-217 758.4 484 78.5
RcHm_v2.0_Chr5g0019781 Rosa chinensis HOM05D003643 ORTHO05D005001 5.7e-217 757.7 483 78.1
FAN21G1938 Fragaria x ananassa HOM05D003643 ORTHO05D005001 9.7e-217 756.9 496 76.8
Lj1C1143T1 Lonicera japonica HOM05D003643 ORTHO05D005001 9.7e-217 756.9 491 77.2
Migut.M01969 Erythranthe guttata HOM05D003643 ORTHO05D005001 1.3e-216 756.5 485 77.5
FAN25G0143 Fragaria x ananassa HOM05D003643 ORTHO05D005001 8.3e-216 753.8 496 76.6
SGA_v2.0_scaffold298G47674 Striga asiatica HOM05D003643 ORTHO05D005001 1.1e-215 753.4 491 76.6
Thecc.04G162500 Theobroma cacao HOM05D003643 ORTHO05D005001 2.0e-214 749.2 496 77.8
TAR365G0076 Trochodendron aralioides HOM05D003643 ORTHO05D005001 2.7e-214 748.8 489 77.5
Duzib268G1178 Durio zibethinus HOM05D003643 ORTHO05D005001 3.5e-214 748.4 488 77.9
Gohir.D10G121400 Gossypium hirsutum HOM05D003643 ORTHO05D005001 3.5e-214 748.4 496 77.6
Gorai.011G133500 Gossypium raimondii HOM05D003643 ORTHO05D005001 3.5e-214 748.4 496 77.6
COL.COLO4_08070 Corchorus olitorius HOM05D003643 ORTHO05D005001 2.2e-213 745.7 526 73.6
Lsat_1_v5_gn_5_36401 Lactuca sativa HOM05D003643 ORTHO05D005001 2.9e-213 745.3 475 78.3
Solyc02g069120.3 Solanum lycopersicum HOM05D003643 ORTHO05D005001 2.9e-213 745.3 485 76.3
Nitab4.5_0002056g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.1e-212 743.4 482 76.8
Sopen02g018250 Solanum pennellii HOM05D003643 ORTHO05D005001 1.9e-212 742.7 485 76.1
HanXRQChr07g0189641 Helianthus annuus HOM05D003643 ORTHO05D005001 2.5e-212 742.3 475 77.9
PGSC0003DMG400010363 Solanum tuberosum HOM05D003643 ORTHO05D005001 1.6e-211 739.6 485 75.7
BcaB01g04707 Brassica carinata HOM05D003643 ORTHO05D005001 2.7e-211 738.8 492 75.0
CAN.G1222.6 Capsicum annuum HOM05D003643 ORTHO05D005001 3.6e-211 738.4 485 75.5
vmacro11251 Vaccinium macrocarpon HOM05D003643 ORTHO05D005001 3.6e-211 738.4 505 75.0
HanXRQChr14g0433091 Helianthus annuus HOM05D003643 ORTHO05D005001 6.8e-210 734.2 476 76.7
Thhalv10013358m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 3.4e-209 731.9 495 75.4
Sp6g22770 Schrenkiella parvula HOM05D003643 ORTHO05D005001 4.4e-209 731.5 492 75.8
BcaC04g19578 Brassica carinata HOM05D003643 ORTHO05D005001 2.2e-208 729.2 491 74.5
Carub.0006s2022 Capsella rubella HOM05D003643 ORTHO05D005001 2.2e-208 729.2 499 74.1
A10p18340 Brassica napus HOM05D003643 ORTHO05D005001 2.8e-208 728.8 491 74.3
AT5G22480 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 6.3e-208 727.6 493 74.2
AL7G45920 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 8.3e-208 727.2 480 75.8
C09p54110 Brassica napus HOM05D003643 ORTHO05D005001 8.3e-208 727.2 491 74.1
BolC9t58281H Brassica oleracea HOM05D003643 ORTHO05D005001 8.3e-208 727.2 491 74.1
BraA10t43914Z Brassica rapa HOM05D003643 ORTHO05D005001 8.3e-208 727.2 491 74.1
BcaC01g06578 Brassica carinata HOM05D003643 ORTHO05D005001 1.8e-207 726.1 491 73.7
BcaC07g37705 Brassica carinata HOM05D003643 ORTHO05D005001 1.8e-207 726.1 492 74.6
SalBow8G4557 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.4e-207 725.7 491 74.9
SalBow8G5428 Salvia bowleyana HOM05D003643 ORTHO05D005001 2.4e-207 725.7 491 74.9
AL6G33500 Arabidopsis lyrata HOM05D003643 ORTHO05D005001 3.1e-207 725.3 492 75.0
BcaB04g18097 Brassica carinata HOM05D003643 ORTHO05D005001 4.1e-207 724.9 481 75.7
FAN16G1159 Fragaria x ananassa HOM05D003643 ORTHO05D005001 4.1e-207 724.9 496 74.8
SpUn0005_0160 Schrenkiella parvula HOM05D003643 ORTHO05D005001 9.1e-207 723.8 493 74.6
AT5G37340 Arabidopsis thaliana HOM05D003643 ORTHO05D005001 1.2e-206 723.4 480 76.0
BcaB08g36427 Brassica carinata HOM05D003643 ORTHO05D005001 1.2e-206 723.4 503 73.2
CARHR215770 Cardamine hirsuta HOM05D003643 ORTHO05D005001 1.6e-206 723.0 479 75.8
A08p10150 Brassica napus HOM05D003643 ORTHO05D005001 3.5e-206 721.8 492 74.2
BraA08t33014Z Brassica rapa HOM05D003643 ORTHO05D005001 5.9e-206 721.1 496 74.0
CARHR191050 Cardamine hirsuta HOM05D003643 ORTHO05D005001 5.9e-206 721.1 491 73.7
Thhalv10027733m.g Eutrema salsugineum HOM05D003643 ORTHO05D005001 1.0e-205 720.3 492 73.8
A03p10790 Brassica napus HOM05D003643 ORTHO05D005001 1.3e-205 719.9 491 73.5
ECA238G3555 Erigeron canadensis HOM05D003643 ORTHO05D005001 1.7e-205 719.5 492 73.8
AUR62010551 Chenopodium quinoa HOM05D003643 ORTHO05D005001 2.3e-205 719.2 485 74.4
Rhsim04G0157300 Rhododendron simsii HOM05D003643 ORTHO05D005001 5.0e-205 718.0 513 73.5
BraA03t10388Z Brassica rapa HOM05D003643 ORTHO05D005001 4.2e-204 714.9 502 72.1
unitig_32.g11672 Utricularia gibba HOM05D003643 ORTHO05D005001 5.5e-204 714.5 488 73.2
BolC3t13712H Brassica oleracea HOM05D003643 ORTHO05D005001 7.2e-204 714.1 494 72.9
ECA246G0187 Erigeron canadensis HOM05D003643 ORTHO05D005001 3.6e-203 711.8 498 74.3
Nn7g37591 Nelumbo nucifera HOM05D003643 ORTHO05D005001 5.7e-201 704.5 481 72.8
Oeu052674.3 Olea europaea HOM05D003643 ORTHO05D005001 7.5e-201 704.1 456 76.8
Phvul.003G000226 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.8e-199 699.5 349 100.0
DCAR_007797 Daucus carota HOM05D003643 ORTHO05D005001 1.6e-198 696.4 483 73.7
Hund14697 Selenicereus undatus HOM05D003643 ORTHO05D005001 2.3e-197 692.6 505 69.5
TPR.G20778 Trifolium pratense HOM05D003643 ORTHO05D005001 3.9e-197 691.8 483 73.7
AUR62017342 Chenopodium quinoa HOM05D003643 ORTHO05D005001 8.6e-197 690.6 457 75.3
CDE02G0779 Ceratophyllum demersum HOM05D003643 ORTHO05D005001 1.5e-196 689.9 479 71.2
SGA_v2.0_scaffold95G28766 Striga asiatica HOM05D003643 ORTHO05D005001 3.6e-195 685.3 506 70.2
Zm00001eb058120 Zea mays HOM05D003643 ORTHO05D005001 1.1e-191 673.7 490 68.0
EL10Ac5g12673 Beta vulgaris HOM05D003643 ORTHO05D005001 2.4e-191 672.5 574 63.8
TPR.G9485 Trifolium pratense HOM05D003643 ORTHO05D005001 2.4e-191 672.5 471 74.3
Hund01937 Selenicereus undatus HOM05D003643 ORTHO05D005001 5.4e-191 671.4 487 68.8
ATR0743G136 Amborella trichopoda HOM05D003643 ORTHO05D005001 7.8e-190 667.5 489 68.7
MBI07_g18519_MAGBIO Magnolia biondii HOM05D003643 ORTHO05D005001 8.6e-189 664.1 487 69.6
Manes.01G122000 Manihot esculenta HOM05D003643 ORTHO05D005001 5.6e-188 661.4 499 70.5
Ca_20206_v3 Cicer arietinum L. HOM05D003643 ORTHO05D005001 2.1e-187 659.4 494 69.8
Aa31LG9G17620 Aethionema arabicum HOM05D003643 ORTHO05D005001 1.4e-186 656.8 519 67.2
Os08g0471900 Oryza sativa ssp. japonica HOM05D003643 ORTHO05D005001 3.1e-186 655.6 469 69.3
Pp3c15_5070 Physcomitrium patens HOM05D003643 ORTHO05D005001 2.9e-184 649.0 491 64.6
PSO675G9021 Papaver somniferum HOM05D003643 ORTHO05D005001 4.9e-184 648.3 477 68.3
HPP92_015903 Vanilla planifolia HOM05D003643 ORTHO05D005001 1.1e-183 647.1 481 67.6
Mapoly0085s0072 Marchantia polymorpha HOM05D003643 ORTHO05D005001 9.2e-183 644.0 494 64.2
Phvul.002G099300 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.1e-181 638.3 403 85.6
Peaxi162Scf00128g01142 Petunia axillaris HOM05D003643 ORTHO05D005001 3.3e-180 635.6 491 68.0
Nitab4.5_0002463g0030 Nicotiana tabacum HOM05D003643 ORTHO05D005001 1.2e-177 627.1 482 68.3
Lsat_1_v5_gn_2_29841 Lactuca sativa HOM05D003643 ORTHO05D005001 1.5e-177 626.7 496 66.7
Aqoxy5G01635 Aquilegia oxysepala HOM05D003643 ORTHO05D005001 1.9e-175 619.8 484 64.9
CSS0005005 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 6.0e-174 614.8 403 77.4
Phvul.L001739 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.9e-167 593.2 410 80.2
Nitab4.5_0004569g0010 Nicotiana tabacum HOM05D003643 ORTHO05D005001 2.1e-166 589.7 489 65.2
SMO203G0021 Selaginella moellendorffii HOM05D003643 ORTHO05D005001 4.3e-164 582.0 455 63.3
CBR_g6566 Chara braunii HOM05D003643 ORTHO05D005001 7.6e-161 571.2 505 58.4
Ciclev10003667m.g Citrus clementina HOM05D003643 ORTHO05D005001 5.1e-157 558.5 383 76.2
ClCG01G009340 Citrullus lanatus HOM05D003643 ORTHO05D005001 3.6e-155 552.4 354 80.2
Phvul.003G000304 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 3.6e-155 552.4 281 99.6
CBR_g34896 Chara braunii HOM05D003643 ORTHO05D005001 4.8e-155 552.0 496 57.9
Phvul.003G000330 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 5.8e-153 545.0 272 99.6
Gohir.1Z049309 Gossypium hirsutum HOM05D003643 ORTHO05D005001 4.9e-152 542.0 361 77.0
QL07p008150 Quercus lobata HOM05D003643 ORTHO05D005001 3.3e-148 529.3 545 55.0
PSO017G1140 Papaver somniferum HOM05D003643 ORTHO05D005001 2.0e-145 520.0 388 68.3
BolC8t48076H Brassica oleracea HOM05D003643 ORTHO05D005001 1.3e-144 517.3 364 73.6
Ah.12g057940 Amaranthus hybridus HOM05D003643 ORTHO05D005001 2.9e-144 516.2 387 69.8
Peaxi162Scf00149g01022 Petunia axillaris HOM05D003643 ORTHO05D005001 1.0e-136 491.1 357 71.4
Gohir.1Z049318 Gossypium hirsutum HOM05D003643 ORTHO05D005001 1.3e-128 464.2 309 77.0
CBR_g6568 Chara braunii HOM05D003643 ORTHO05D005001 1.4e-125 454.1 470 51.9
C03p12370 Brassica napus HOM05D003643 ORTHO05D005001 5.3e-122 442.2 358 64.5
Haze_13620 Corylus avellana HOM05D003643 ORTHO05D005001 2.6e-121 439.9 276 80.8
Phvul.003G000278 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 1.3e-104 384.4 193 98.4
Phvul.L008901 Phaseolus vulgaris HOM05D003643 ORTHO05D005001 8.5e-96 355.1 184 99.5
Actinidia36045 Actinidia chinensis HOM05D003643 ORTHO05D005001 4.1e-90 336.3 229 73.8
Atru.chr3.103 Acer truncatum HOM05D003643 ORTHO05D005001 5.2e-85 319.3 252 68.7
Cfa025656 Carpinus fangiana HOM05D003643 ORTHO05D005001 1.2e-81 308.1 473 38.5
DCAR_017792 Daucus carota HOM05D003643 ORTHO05D005001 2.4e-74 283.9 204 72.5
SEGI_34727 Sequoiadendron giganteum HOM05D003643 ORTHO05D005001 6.0e-65 252.7 200 64.5
Psat3g171960 Pisum sativum HOM05D003643 ORTHO05D005001 9.5e-63 245.4 231 59.7
Psat6g162200 Pisum sativum HOM05D003643 ORTHO05D005001 1.1e-58 231.9 327 45.3
ClCG01G009350 Citrullus lanatus HOM05D003643 ORTHO05D005001 5.2e-53 213.0 127 81.1
Lsat_1_v5_gn_5_36361 Lactuca sativa HOM05D003643 ORTHO05D018815 1.2e-52 211.8 127 80.3
Phvul.L001639 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.7e-51 208.0 99 99.0
Phvul.L008801 Phaseolus vulgaris HOM05D003643 ORTHO05D034905 1.7e-51 208.0 99 99.0
Atru.chr8.2585 Acer truncatum HOM05D003643 ORTHO05D005001 2.2e-51 207.6 153 71.2
BolC8t48075H Brassica oleracea HOM05D003643 ORTHO05D018815 1.6e-49 201.4 137 71.5
Atru.chr8.2696 Acer truncatum HOM05D003643 ORTHO05D005001 1.7e-48 198.0 263 49.0
Peaxi162Scf00149g01017 Petunia axillaris HOM05D003643 ORTHO05D018815 1.1e-47 195.3 130 74.6
CSS0009011 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 4.3e-47 193.4 114 80.7
CSS0015856 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D005001 1.6e-41 174.9 114 74.6
ATR0712G001 Amborella trichopoda HOM05D003643 ORTHO05D023464 5.1e-40 169.9 127 66.9
CBR_g12037 Chara braunii HOM05D003643 ORTHO05D005001 2.1e-33 147.9 207 43.0
Haze_13619 Corylus avellana HOM05D003643 ORTHO05D034905 3.2e-26 124.0 105 62.9
Lsat_1_v5_gn_5_135000 Lactuca sativa HOM05D003643 ORTHO05D005001 5.1e-24 116.7 97 64.9
Cc11_g00920 Coffea canephora HOM05D003643 ORTHO05D005001 2.5e-23 114.4 67 82.1
Psat0s3903g0040 Pisum sativum HOM05D003643 ORTHO05D005001 2.4e-21 107.8 65 87.7
Lsat_1_v5_gn_5_54460 Lactuca sativa HOM05D003643 ORTHO05D005001 5.3e-21 106.7 189 40.2
ClCG01G009330 Citrullus lanatus HOM05D003643 ORTHO05D018815 2.0e-20 104.8 58 84.5
Haze_13621 Corylus avellana HOM05D003643 ORTHO05D018815 2.6e-20 104.4 68 75.0
Gohir.A10G145401 Gossypium hirsutum HOM05D003643 ORTHO05D018815 6.5e-19 99.8 65 73.8
CSS0030804 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 8.5e-19 99.4 65 75.4
CSS0024414 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 7.2e-18 96.3 65 72.3
CSS0049868 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 7.2e-18 96.3 65 72.3
CSS0023685 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 7.9e-17 92.8 74 63.5
CSS0012788 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D023464 5.7e-15 86.7 77 61.0
CSS0032340 Camellia sinensis var. sinensis HOM05D003643 ORTHO05D018815 5.9e-12 76.6 46 71.7
HanXRQChr06g0180401 Helianthus annuus HOM05D003643 ORTHO05D005001 1.1e-10 72.4 38 84.2
RcHm_v2.0_Chr5g0019801 Rosa chinensis HOM05D003643 ORTHO05D005001 5.7e-07 60.1 48 75.0


User provided reference genes

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