Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G333000 Phaseolus vulgaris HOM05D006788 ORTHO05D008265 0.0e+00 1988.0 1049 100.0
VMungo0251G0495 Vigna mungo HOM05D006788 ORTHO05D008265 0.0e+00 1681.8 1052 85.8
Glyma.08G057300 Glycine max HOM05D006788 ORTHO05D008265 0.0e+00 1464.1 1054 75.6
Glyma.05G248700 Glycine max HOM05D006788 ORTHO05D008265 0.0e+00 1461.8 1054 76.3
LjContig00484g0028229 Lotus japonicus HOM05D006788 ORTHO05D008265 9.0e-297 1023.8 1095 57.9
arahy.Tifrunner.gnm1.ann1.HV2TRI Arachis hypogaea HOM05D006788 ORTHO05D008265 1.2e-195 688.0 1102 44.7
arahy.Tifrunner.gnm1.ann1.50JV45 Arachis hypogaea HOM05D006788 ORTHO05D008265 5.8e-195 685.6 1101 44.8
Lalb_Chr05g0221391 Lupinus albus HOM05D006788 ORTHO05D008265 3.8e-194 682.9 874 53.0
TPR.G1461 Trifolium pratense HOM05D006788 ORTHO05D008265 6.9e-180 635.6 1076 46.0
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 8.4e-178 628.6 1094 42.6
Medtr8g107730 Medicago truncatula HOM05D006788 ORTHO05D008265 4.9e-170 602.8 1083 43.7
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 8.8e-159 565.5 1099 38.7
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 1.5e-155 554.7 1093 38.4
Cfa018147 Carpinus fangiana HOM05D006788 ORTHO05D008265 3.0e-151 540.4 1089 38.8
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 6.7e-151 539.3 1091 37.9
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 3.3e-150 537.0 1098 38.4
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 4.8e-149 533.1 1095 38.1
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 6.3e-149 532.7 1097 38.1
Potri.014G185300 Populus trichocarpa HOM05D006788 ORTHO05D008265 6.9e-148 529.3 1101 37.6
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 1.7e-146 524.6 1100 37.3
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 3.2e-145 520.4 1094 37.4
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 1.8e-143 514.6 1092 37.8
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.6e-142 510.8 1091 37.4
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.8e-141 507.3 1092 37.3
Haze_17976 Corylus avellana HOM05D006788 ORTHO05D008265 3.7e-141 506.9 1116 38.0
Sabra14G0142000 Salix brachista HOM05D006788 ORTHO05D008265 6.7e-135 486.1 1095 36.1
Ca_17169_v3 Cicer arietinum L. HOM05D005071 ORTHO05D006069 7.5e-134 482.6 996 42.0
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 2.2e-133 481.1 1098 36.1
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 4.1e-132 476.9 1101 35.5
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 1.7e-130 471.5 1096 35.0
TWI56G0676 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 6.5e-130 469.5 1093 34.6
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 1.5e-129 468.4 1078 36.9
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 1.2e-128 465.3 1100 34.9
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 3.6e-128 463.8 1092 35.1
Manes.18G027700 Manihot esculenta HOM05D006788 ORTHO05D008265 1.2e-126 458.8 1024 36.1
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 2.7e-123 447.6 1093 33.8
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 6.1e-120 436.4 1104 33.2
GSVIVG01009701001 Vitis vinifera HOM05D006788 ORTHO05D008265 1.4e-119 435.3 1082 34.5
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.4e-116 425.2 1095 33.6
Dinv39415 Davidia involucrata HOM05D006788 ORTHO05D008265 8.6e-114 416.0 1072 34.8
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 1.5e-110 405.2 1056 34.5
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 3.4e-110 404.1 1127 32.6
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 4.1e-108 397.1 1071 34.2
CsaV3_3G045060 Cucumis sativus L. HOM05D006788 ORTHO05D008265 3.5e-107 394.0 1120 32.2
Lj4A785T32 Lonicera japonica HOM05D006788 ORTHO05D008265 3.0e-106 391.0 1072 33.8
MELO3C003844.2 Cucumis melo HOM05D006788 ORTHO05D008265 6.6e-106 389.8 1121 31.7
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 1.9e-105 388.3 1113 33.9
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 2.8e-104 384.4 1080 33.1
Cc10_g02940 Coffea canephora HOM05D006788 ORTHO05D008265 1.3e-101 375.6 1082 32.3
vmacro21636 Vaccinium macrocarpon HOM05D006788 ORTHO05D008265 5.4e-100 370.2 1130 32.4
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 2.7e-99 367.9 1063 32.7
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 1.0e-98 365.9 1107 32.2
Nitab4.5_0009150g0020 Nicotiana tabacum HOM05D006788 ORTHO05D008265 1.0e-98 365.9 1120 31.2
Gohir.A05G194600 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.2e-94 352.4 1077 31.4
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 2.0e-94 351.7 1098 31.9
Peaxi162Scf00417g01019 Petunia axillaris HOM05D006788 ORTHO05D008265 5.8e-94 350.1 1126 30.5
PGSC0003DMG400005137 Solanum tuberosum HOM05D006788 ORTHO05D008265 2.9e-93 347.8 1115 30.4
Aqoxy5G01647 Aquilegia oxysepala HOM05D006788 ORTHO05D008265 6.4e-93 346.7 1089 30.6
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 8.3e-93 346.3 1111 30.9
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 4.1e-92 344.0 1100 31.5
DCAR_008759 Daucus carota HOM05D006788 ORTHO05D008265 1.2e-91 342.4 1075 30.0
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 8.6e-90 336.3 1102 30.8
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 2.5e-89 334.7 1121 30.7
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 9.2e-84 316.2 1098 29.7
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 3.5e-83 314.3 880 33.9
Cpa.g.sc36.71 Carica papaya HOM05D006788 ORTHO05D008265 1.3e-82 312.4 858 32.8
THA.LOC104798640 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 3.3e-81 307.8 1087 29.6
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 1.6e-80 305.4 1072 29.7
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 1.8e-79 302.0 1045 30.5
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 4.0e-79 300.8 1099 29.9
Gohir.D05G197766 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.5e-78 298.9 1022 30.9
Psat7g000480 Pisum sativum HOM05D006788 ORTHO05D008265 4.2e-76 290.8 580 42.6
MBI16_g34334_MAGBIO Magnolia biondii HOM05D006788 ORTHO05D008265 9.3e-76 289.7 1147 27.4
Gorai.005G107800 Gossypium raimondii HOM05D006788 ORTHO05D008265 2.1e-75 288.5 1058 29.8
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 4.8e-72 277.3 1081 28.5
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 9.0e-71 273.1 971 31.0
AL8G18450 Arabidopsis lyrata HOM05D006788 ORTHO05D008265 2.0e-70 271.9 1076 29.2
Sp2g07230 Schrenkiella parvula HOM05D006788 ORTHO05D008265 1.1e-68 266.2 1061 28.5
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 2.1e-67 261.9 1090 27.2
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 4.6e-67 260.8 1078 28.2
BcaC04g21980 Brassica carinata HOM05D006788 ORTHO05D008265 7.9e-67 260.0 1064 28.6
A09p19890 Brassica napus HOM05D006788 ORTHO05D008265 2.3e-66 258.5 1064 28.0
C09p25220 Brassica napus HOM05D006788 ORTHO05D008265 3.9e-66 257.7 1062 28.8
BraA09t37598Z Brassica rapa HOM05D006788 ORTHO05D008265 6.7e-66 256.9 1064 28.0
Aa31LG9G12770 Aethionema arabicum HOM05D006788 ORTHO05D008265 1.5e-65 255.8 1056 26.8
Gohir.A03G078650 Gossypium hirsutum HOM05D006788 ORTHO05D008265 9.6e-65 253.1 1059 27.8
BolC9t55417H Brassica oleracea HOM05D006788 ORTHO05D008265 4.8e-64 250.8 1063 28.6
Sed0005360 Sechium edule HOM05D006788 ORTHO05D008265 6.2e-64 250.4 860 31.5
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 8.1e-64 250.0 1073 27.2
PSO700G0053 Papaver somniferum HOM05D006788 ORTHO05D008265 1.2e-62 246.1 1088 27.8
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 2.0e-62 245.4 451 40.8
PSO081G0175 Papaver somniferum HOM05D006788 ORTHO05D008265 2.9e-61 241.5 1099 26.7
Carub.0008s0625 Capsella rubella HOM05D006788 ORTHO05D008265 3.2e-60 238.0 1065 27.7
BcaB07g31060 Brassica carinata HOM05D006788 ORTHO05D008265 7.1e-60 236.9 1065 28.1
Thhalv10003405m.g Eutrema salsugineum HOM05D006788 ORTHO05D008265 2.1e-59 235.3 1061 28.0
HanXRQChr05g0151911 Helianthus annuus HOM05D006788 ORTHO05D008265 1.3e-58 232.6 1080 26.7
AT5G42710 Arabidopsis thaliana HOM05D006788 ORTHO05D008265 6.2e-56 223.8 1059 27.1
Sc15g0006920 Simmondsia chinensis HOM05D000020 ORTHO05D008265 1.1e-55 223.0 941 29.2
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 1.8e-55 222.2 1053 26.6
ECA246G4903 Erigeron canadensis HOM05D006788 ORTHO05D008265 3.4e-54 218.0 1074 27.8
Cpa.g.sc36.70 Carica papaya HOM05D006788 ORTHO05D008265 9.7e-49 199.9 189 54.0
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 5.9e-46 190.7 386 39.6
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 4.6e-43 181.0 1232 24.3
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 5.7e-41 174.1 379 38.3
HPP92_019509 Vanilla planifolia HOM05D006788 ORTHO05D008265 9.1e-39 166.8 1026 24.4
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 2.0e-38 165.6 1043 24.0
RcHm_v2.0_Chr6g0300941 Rosa chinensis HOM05D006788 ORTHO05D008265 4.5e-38 164.5 211 41.7
Hma1.2p1_2195F.1_g316830 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 6.3e-32 144.1 415 31.6
Atru.chr13.490 Acer truncatum HOM05D006788 ORTHO05D008265 1.4e-23 116.3 118 50.8
Os03g0775700 Oryza sativa ssp. japonica HOM05D006788 ORTHO05D008265 1.6e-19 102.8 1093 22.3
CDE07G1328 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 1.3e-16 93.2 223 30.0
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 1.6e-11 76.3 919 21.9
CDE04G2912 Ceratophyllum demersum HOM05D006788 ORTHO05D008265 2.7e-11 75.5 280 28.6
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 1.4e-10 73.2 225 31.6
Zm00001eb213730 Zea mays HOM05D006788 ORTHO05D008265 2.3e-10 72.4 1087 21.3
unitig_578.g16070 Utricularia gibba HOM05D006788 ORTHO05D008265 5.2e-10 71.2 417 25.7
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 1.5e-09 69.7 169 29.6
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 2.6e-09 68.9 200 31.5
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 2.6e-09 68.9 302 28.5
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 3.4e-09 68.6 228 30.7
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 9.8e-09 67.0 283 26.5
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 1.3e-08 66.6 206 30.6
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 1.3e-08 66.6 221 29.9
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 1.7e-08 66.2 176 31.8
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 2.2e-08 65.9 934 21.7
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 3.7e-08 65.1 200 31.0
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 6.3e-08 64.3 239 25.9
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 6.3e-08 64.3 215 26.5
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 6.3e-08 64.3 979 21.8
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 6.3e-08 64.3 208 28.8
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 8.3e-08 63.9 69 47.8
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 8.3e-08 63.9 85 47.1
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 1.1e-07 63.5 960 20.5
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 1.4e-07 63.2 204 28.9
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 1.8e-07 62.8 263 28.5
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 2.4e-07 62.4 170 32.9
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 3.1e-07 62.0 930 21.6
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 3.1e-07 62.0 930 21.1
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 4.1e-07 61.6 979 21.2
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 4.1e-07 61.6 232 29.7
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 4.1e-07 61.6 85 44.7
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 4.1e-07 61.6 224 32.1
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 5.4e-07 61.2 217 30.0
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 5.4e-07 61.2 213 30.0
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 5.4e-07 61.2 213 27.7
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 7.0e-07 60.8 206 27.2
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 7.0e-07 60.8 245 22.9
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 7.0e-07 60.8 281 27.0
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 1.2e-06 60.1 213 28.2
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 1.2e-06 60.1 459 25.3
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 1.6e-06 59.7 90 41.1
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 1.6e-06 59.7 90 41.1
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 2.0e-06 59.3 207 27.1
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 2.7e-06 58.9 230 29.6
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 3.5e-06 58.5 976 21.7
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 3.5e-06 58.5 269 26.8
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 3.5e-06 58.5 203 29.1
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 3.5e-06 58.5 277 26.7
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 5.9e-06 57.8 74 40.5


User provided reference genes

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