Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G328900 Phaseolus vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1498.0 732 100.0
VMungo0251G3777 Vigna mungo HOM05D003895 ORTHO05D004723 0.0e+00 1422.9 732 94.8
Glyma.05G219500 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1399.4 732 92.2
Lj4g0018300 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1354.0 733 89.2
Ca_17453_v3 Cicer arietinum L. HOM05D003895 ORTHO05D004723 0.0e+00 1352.0 732 89.1
TPR.G18245 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1350.5 732 89.1
Medtr8g099885 Medicago truncatula HOM05D003895 ORTHO05D004723 0.0e+00 1345.9 732 88.5
Lalb_Chr16g0390761 Lupinus albus HOM05D003895 ORTHO05D004723 0.0e+00 1343.9 732 88.5
TPR.G3395 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1342.4 732 88.4
arahy.Tifrunner.gnm1.ann1.68E5M7 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1340.5 732 89.1
Psat7g023560 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1339.3 732 88.0
Lj4g0016220 Lotus japonicus HOM05D003895 ORTHO05D004723 0.0e+00 1336.2 733 87.6
arahy.Tifrunner.gnm1.ann1.M62N24 Arachis hypogaea HOM05D003895 ORTHO05D004723 0.0e+00 1323.5 724 88.5
MD14G1134200 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1307.4 734 85.6
Prupe.5G126000 Prunus persica HOM05D003895 ORTHO05D004723 0.0e+00 1307.0 734 85.4
MD06G1113100 Malus domestica HOM05D003895 ORTHO05D004723 0.0e+00 1305.4 734 85.1
CANSAT54G0301 Cannabis sativa HOM05D003895 ORTHO05D004723 0.0e+00 1303.9 733 85.0
RcHm_v2.0_Chr7g0186311 Rosa chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1297.3 732 84.6
Ciclev10024991m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1296.6 732 85.0
QL02p029300 Quercus lobata HOM05D003895 ORTHO05D004723 0.0e+00 1296.2 730 85.2
Thecc.03G303200 Theobroma cacao HOM05D003895 ORTHO05D004723 0.0e+00 1296.2 734 85.0
PGR042G2513 Punica granatum HOM05D003895 ORTHO05D004723 0.0e+00 1295.8 734 84.6
FAN08G0955 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1292.7 732 84.0
FvH4_5g11490 Fragaria vesca HOM05D003895 ORTHO05D004723 0.0e+00 1292.3 730 84.1
Ciclev10019024m.g Citrus clementina HOM05D003895 ORTHO05D004723 0.0e+00 1291.9 732 84.4
FAN18G2619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1291.2 730 84.0
FAN18G3428 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1291.2 730 84.0
Cfa011961 Carpinus fangiana HOM05D003895 ORTHO05D004723 0.0e+00 1289.6 734 84.7
FAN04G2440 Fragaria x ananassa HOM05D003895 ORTHO05D004723 0.0e+00 1289.6 732 84.0
Gorai.004G131300 Gossypium raimondii HOM05D003895 ORTHO05D004723 0.0e+00 1289.2 732 84.3
CSS0003453 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1288.1 734 84.5
HanXRQChr03g0083671 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1285.4 733 84.6
Psat7g023520 Pisum sativum HOM05D003895 ORTHO05D004723 0.0e+00 1285.0 727 84.7
Duzib068G0704 Durio zibethinus HOM05D003895 ORTHO05D004723 0.0e+00 1284.6 734 84.6
ECA240G1010 Erigeron canadensis HOM05D003895 ORTHO05D004723 0.0e+00 1284.6 733 84.3
Migut.E00651 Erythranthe guttata HOM05D003895 ORTHO05D004723 0.0e+00 1284.6 732 83.2
Gohir.D08G124600 Gossypium hirsutum HOM05D003895 ORTHO05D004723 0.0e+00 1284.2 732 84.2
Potri.003G143700 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1284.2 732 83.9
Oeu009988.1 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1283.9 732 83.6
CiPaw.11G115900 Carya illinoinensis HOM05D003895 ORTHO05D004723 0.0e+00 1283.1 734 84.2
HanXRQChr06g0166321 Helianthus annuus HOM05D003895 ORTHO05D004723 0.0e+00 1281.9 732 84.8
Manes.02G005900 Manihot esculenta HOM05D003895 ORTHO05D004723 0.0e+00 1281.9 731 83.7
Potri.001G087400 Populus trichocarpa HOM05D003895 ORTHO05D004723 0.0e+00 1281.5 732 84.0
TAR629G1064 Trochodendron aralioides HOM05D003895 ORTHO05D004723 0.0e+00 1280.8 734 83.8
Actinidia04389 Actinidia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1278.5 732 84.0
CSS0024936 Camellia sinensis var. sinensis HOM05D003895 ORTHO05D004723 0.0e+00 1277.7 734 83.9
MSTRG.13762 Avicennia marina HOM05D003895 ORTHO05D004723 0.0e+00 1276.9 731 84.0
Cpa.g.sc15.11 Carica papaya HOM05D003895 ORTHO05D004723 0.0e+00 1276.9 744 82.9
Glyma.08G025800 Glycine max HOM05D003895 ORTHO05D004723 0.0e+00 1276.5 659 93.6
MELO3C005756.2 Cucumis melo HOM05D003895 ORTHO05D004723 0.0e+00 1275.0 732 84.6
SalBow2G2362 Salvia bowleyana HOM05D003895 ORTHO05D004723 0.0e+00 1274.2 732 83.6
TWI60G1173 Tripterygium wilfordii HOM05D003895 ORTHO05D004723 0.0e+00 1271.5 732 84.0
Cc05_g02370 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1270.0 732 83.3
Haze_09120 Corylus avellana HOM05D003895 ORTHO05D004723 0.0e+00 1269.2 749 82.8
Eucgr.E01025 Eucalyptus grandis HOM05D003895 ORTHO05D004723 0.0e+00 1267.7 730 83.4
Aqoxy2G01051 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 0.0e+00 1266.9 734 83.2
DCAR_006502 Daucus carota HOM05D003895 ORTHO05D004723 0.0e+00 1266.5 730 82.6
Nitab4.5_0002439g0120 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1266.1 732 83.1
PSO170G0459 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1266.1 735 82.2
Sabra01G0063700 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1264.2 732 83.2
Nn3g20296 Nelumbo nucifera HOM05D003895 ORTHO05D004723 0.0e+00 1263.8 732 82.9
PGSC0003DMG400012128 Solanum tuberosum HOM05D003895 ORTHO05D004723 0.0e+00 1263.8 732 82.2
Solyc08g082830.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 0.0e+00 1261.9 732 82.2
Rhsim07G0079800 Rhododendron simsii HOM05D003895 ORTHO05D004723 0.0e+00 1260.4 732 82.8
COL.COLO4_10753 Corchorus olitorius HOM05D003895 ORTHO05D004723 0.0e+00 1258.0 732 83.2
Aa31LG2G1550 Aethionema arabicum HOM05D003895 ORTHO05D004723 0.0e+00 1256.9 734 82.6
Sabra03G0104100 Salix brachista HOM05D003895 ORTHO05D004723 0.0e+00 1256.5 775 78.8
Cc08_g16460 Coffea canephora HOM05D003895 ORTHO05D004723 0.0e+00 1255.0 732 81.7
Nitab4.5_0002367g0210 Nicotiana tabacum HOM05D003895 ORTHO05D004723 0.0e+00 1252.3 724 83.1
CAN.G567.61 Capsicum annuum HOM05D003895 ORTHO05D004723 0.0e+00 1250.7 732 81.7
Hund14202 Selenicereus undatus HOM05D003895 ORTHO05D004723 0.0e+00 1245.7 733 81.0
THA.LOC104823616 Tarenaya hassleriana HOM05D003895 ORTHO05D004723 0.0e+00 1243.8 732 81.7
Sopen08g031060 Solanum pennellii HOM05D003895 ORTHO05D004723 0.0e+00 1243.0 694 84.4
Thhalv10011266m.g Eutrema salsugineum HOM05D003895 ORTHO05D004723 0.0e+00 1241.9 732 80.6
TPR.G3413 Trifolium pratense HOM05D003895 ORTHO05D004723 0.0e+00 1240.3 720 82.6
GSVIVG01019608001 Vitis vinifera HOM05D003895 ORTHO05D004723 0.0e+00 1237.2 733 81.0
Sp1g40750 Schrenkiella parvula HOM05D003895 ORTHO05D004723 0.0e+00 1235.7 732 81.0
BcaB04g17002 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1235.3 732 80.5
BcaB07g33238 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1234.9 732 80.7
BcaC08g43605 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1229.9 732 80.2
AL1G63080 Arabidopsis lyrata HOM05D003895 ORTHO05D004723 0.0e+00 1228.4 732 80.9
vmacro13870 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1228.4 774 77.0
Carub.0001s4358 Capsella rubella HOM05D003895 ORTHO05D004723 0.0e+00 1227.6 735 80.1
Oeu059576.4 Olea europaea HOM05D003895 ORTHO05D004723 0.0e+00 1227.6 782 76.6
AT1G55090 Arabidopsis thaliana HOM05D003895 ORTHO05D004723 0.0e+00 1226.8 732 80.6
CARHR044680 Cardamine hirsuta HOM05D003895 ORTHO05D004723 0.0e+00 1226.8 732 80.2
A08p01020 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1226.1 735 79.5
BolC6t36080H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1226.1 732 80.1
BraA06t23255Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1225.7 732 79.9
BcaC01g01456 Brassica carinata HOM05D003895 ORTHO05D004723 0.0e+00 1225.3 735 79.7
A06p00400 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1224.2 732 79.8
vmacro10679 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1223.8 781 75.9
vmacro22441 Vaccinium macrocarpon HOM05D003895 ORTHO05D004723 0.0e+00 1223.8 781 75.9
C06p10070 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1221.5 732 79.8
ClCG01G001820 Citrullus lanatus HOM05D003895 ORTHO05D004723 0.0e+00 1217.6 830 74.0
EL10Ac5g12963 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1213.7 705 80.7
AUR62029097 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1211.4 735 78.9
Lsat_1_v5_gn_6_83601 Lactuca sativa HOM05D003895 ORTHO05D004723 0.0e+00 1211.4 732 80.5
AUR62015016 Chenopodium quinoa HOM05D003895 ORTHO05D004723 0.0e+00 1203.3 750 77.3
Lj2C160T5 Lonicera japonica HOM05D003895 ORTHO05D004723 0.0e+00 1195.3 730 79.3
PSO339G2482 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1193.7 733 77.4
Peaxi162Scf00074g00431 Petunia axillaris HOM05D003895 ORTHO05D004723 0.0e+00 1191.0 732 79.5
Sc01g0010470 Simmondsia chinensis HOM05D003895 ORTHO05D004723 0.0e+00 1189.9 663 84.2
C03p92220 Brassica napus HOM05D003895 ORTHO05D004723 0.0e+00 1188.7 747 77.4
BolC3t21537H Brassica oleracea HOM05D003895 ORTHO05D004723 0.0e+00 1188.7 744 77.3
BraA08t32154Z Brassica rapa HOM05D003895 ORTHO05D004723 0.0e+00 1188.7 746 77.2
PSO017G1958 Papaver somniferum HOM05D003895 ORTHO05D004723 0.0e+00 1168.7 735 77.6
unitig_21.g20891 Utricularia gibba HOM05D003895 ORTHO05D004723 0.0e+00 1161.0 735 76.1
SGA_v2.0_scaffold295G47513 Striga asiatica HOM05D003895 ORTHO05D004723 0.0e+00 1160.2 734 77.1
CsaV3_5G001970 Cucumis sativus L. HOM05D003895 ORTHO05D004723 0.0e+00 1158.7 667 84.3
Zm00001eb094700 Zea mays HOM05D003895 ORTHO05D004723 0.0e+00 1152.5 733 74.6
MBI02_g10555_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 0.0e+00 1139.0 741 74.0
HPP92_025338 Vanilla planifolia HOM05D003895 ORTHO05D004723 0.0e+00 1135.2 694 76.7
ATR1098G082 Amborella trichopoda HOM05D003895 ORTHO05D004723 0.0e+00 1125.9 735 73.3
Sed0021355 Sechium edule HOM05D003895 ORTHO05D004723 0.0e+00 1115.5 616 86.9
EL10Ac5g12472 Beta vulgaris HOM05D003895 ORTHO05D004723 0.0e+00 1111.7 701 75.5
Hma1.2p1_1835F.1_g304665 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 0.0e+00 1100.5 616 84.7
SEGI_31460 Sequoiadendron giganteum HOM05D003895 ORTHO05D004723 0.0e+00 1082.0 734 70.7
Dinv34692 Davidia involucrata HOM05D003895 ORTHO05D004723 6.0e-308 1060.4 585 86.2
FAN13G0619 Fragaria x ananassa HOM05D003895 ORTHO05D004723 7.9e-308 1060.1 732 71.6
Manes.02G005800 Manihot esculenta HOM05D003895 ORTHO05D004723 2.0e-303 1045.4 695 72.5
Ah.12g052950 Amaranthus hybridus HOM05D003895 ORTHO05D004723 3.8e-302 1041.2 752 70.5
Mapoly0035s0052 Marchantia polymorpha HOM05D003895 ORTHO05D004723 1.0e-283 979.9 734 64.9
CBR_g19728 Chara braunii HOM05D003895 ORTHO05D004723 5.2e-283 977.6 713 65.4
AUR62019884 Chenopodium quinoa HOM05D003895 ORTHO05D004723 9.1e-280 966.8 697 69.2
SMO174G0028 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 1.6e-279 966.1 734 63.9
MCO17G006 Micromonas commoda HOM05D003895 ORTHO05D004723 1.2e-260 903.3 690 62.3
AagrBONN_evm.TU.Sc2ySwM_228.4970 Anthoceros agrestis HOM05D003895 ORTHO05D004723 2.3e-259 899.0 653 66.8
Pp3c17_21910 Physcomitrium patens HOM05D003895 ORTHO05D004723 3.4e-258 895.2 669 63.4
Os07g0167100 Oryza sativa ssp. japonica HOM05D003895 ORTHO05D004723 1.5e-253 879.8 568 75.5
Gohir.A08G111660 Gossypium hirsutum HOM05D003895 ORTHO05D004723 6.1e-252 874.4 506 84.6
SMO358G0326 Selaginella moellendorffii HOM05D003895 ORTHO05D004723 6.4e-249 864.4 694 60.7
PRCOL_00000896 Prasinoderma coloniale HOM05D003895 ORTHO05D004723 1.2e-234 817.0 702 56.8
Cre10.g435250 Chlamydomonas reinhardtii HOM05D003895 ORTHO05D004723 7.1e-232 807.7 785 53.6
Migut.E01630 Erythranthe guttata HOM05D003895 ORTHO05D004723 7.6e-226 787.7 505 75.6
Hma1.2p1_0077F.1_g039630 Hydrangea macrophylla HOM05D003895 ORTHO05D004723 6.2e-212 741.5 417 83.5
Cfa024512 Carpinus fangiana HOM05D003895 ORTHO05D004723 2.1e-204 716.5 712 52.8
MBI02_g43672_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 7.4e-181 638.3 422 72.0
PSO210G1536 Papaver somniferum HOM05D003895 ORTHO05D004723 5.3e-155 552.4 377 68.4
Aqoxy456s001 Aquilegia oxysepala HOM05D003895 ORTHO05D004723 1.2e-151 541.2 300 88.3
ECA246G1101 Erigeron canadensis HOM05D003895 ORTHO05D004723 1.5e-144 517.7 311 81.0
AUR62007020 Chenopodium quinoa HOM05D003895 ORTHO05D004723 2.1e-143 513.8 317 80.4
Haze_09105 Corylus avellana HOM05D003895 ORTHO05D004723 8.9e-142 508.4 349 76.8
MBI05_g40947_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.5e-141 507.7 358 70.9
MBI15_g06349_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 7.8e-122 442.2 345 65.5
MBI05_g43497_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 1.9e-112 411.0 283 71.4
SalBow2G1745 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.3e-105 388.3 312 62.5
Psat7g023400 Pisum sativum HOM05D003895 ORTHO05D004723 2.7e-90 337.4 429 49.0
Gohir.A08G111640 Gossypium hirsutum HOM05D003895 ORTHO05D004723 6.0e-90 336.3 183 80.9
MBI05_g40946_MAGBIO Magnolia biondii HOM05D003895 ORTHO05D004723 5.1e-89 333.2 209 76.1
arahy.Tifrunner.gnm1.ann1.RT27P1 Arachis hypogaea HOM05D003895 ORTHO05D004723 4.2e-83 313.5 353 53.8
BcaB04g17000 Brassica carinata HOM05D003895 ORTHO05D004723 7.2e-67 259.6 224 61.6
SalBow2G2695 Salvia bowleyana HOM05D003895 ORTHO05D004723 1.4e-65 255.4 203 61.1
SalBow2G0791 Salvia bowleyana HOM05D003895 ORTHO05D004723 3.9e-65 253.8 168 66.7
BcaB04g16999 Brassica carinata HOM05D003895 ORTHO05D004723 7.7e-61 239.6 207 62.3
AagrBONN_evm.TU.Sc2ySwM_228.4951 Anthoceros agrestis HOM05D003895 ORTHO05D004723 2.0e-45 188.3 219 44.3
DCAR_006503 Daucus carota HOM05D001368 ORTHO05D003846 8.0e-42 176.4 206 51.5
BcaB04g17001 Brassica carinata HOM05D003895 ORTHO05D004723 5.2e-41 173.7 210 51.0
BcaB01g00975 Brassica carinata HOM05D003895 ORTHO05D004723 4.4e-40 170.6 101 70.3
BcaB05g22068 Brassica carinata HOM05D003895 ORTHO05D004723 1.7e-39 168.7 101 69.3
BcaB01g02352 Brassica carinata HOM05D003895 ORTHO05D004723 1.6e-29 135.6 80 71.2
Sopen06g027550 Solanum pennellii HOM05D003895 ORTHO05D004723 5.0e-28 130.6 161 49.7
BcaC01g01457 Brassica carinata HOM05D003895 ORTHO05D004723 1.1e-27 129.4 109 56.9
Nitab4.5_0000974g0050 Nicotiana tabacum HOM05D003895 ORTHO05D285369 1.7e-23 115.5 101 59.4
MBI15_g06350_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D000018 1.8e-22 112.1 79 63.3
Lj4g0022111 Lotus japonicus HOM05D019175 ORTHO05D018974 1.3e-20 105.9 60 81.7
Solyc06g071240.3 Solanum lycopersicum HOM05D003895 ORTHO05D004723 6.6e-20 103.6 127 51.2
CARHR106400 Cardamine hirsuta HOM05D003895 ORTHO05D004723 5.6e-19 100.5 187 36.4
CARHR260480 Cardamine hirsuta HOM05D003895 ORTHO05D004723 5.6e-19 100.5 149 40.3
Nitab4.5_0001308g0060 Nicotiana tabacum HOM05D003895 ORTHO05D282403 2.3e-17 95.1 111 47.7
CAN.G628.62 Capsicum annuum HOM05D003895 ORTHO05D004723 4.0e-17 94.4 109 49.5
BcaB04g16998 Brassica carinata HOM05D003895 ORTHO05D004723 3.7e-15 87.8 46 82.6
Medtr3g108170 Medicago truncatula HOM05D003895 ORTHO05D260611 1.1e-11 76.3 268 29.9
Atru.chr9.1960 Acer truncatum HOM05D003895 ORTHO05D004723 3.3e-11 74.7 46 78.3
Nitab4.5_0004376g0060 Nicotiana tabacum HOM05D003895 ORTHO05D286866 3.3e-11 74.7 49 77.6
BcaC01g01459 Brassica carinata HOM05D003895 ORTHO05D004723 5.2e-09 67.4 101 44.6
BcaC01g01463 Brassica carinata HOM05D003895 ORTHO05D004723 8.9e-09 66.6 76 53.9
Glyma.17G110701 Glycine max HOM05D003895 ORTHO05D004723 3.4e-08 64.7 34 91.2
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 5.8e-08 63.9 46 69.6
PGSC0003DMG400033059 Solanum tuberosum HOM05D003895 ORTHO05D004723 5.8e-08 63.9 40 72.5
Nitab4.5_0000050g0220 Nicotiana tabacum HOM05D003895 ORTHO05D285100 8.3e-07 60.1 43 76.7


User provided reference genes

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