Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G327400 Phaseolus vulgaris HOM05D002209 ORTHO05D004761 5.4e-204 714.1 370 100.0
VMungo0251G1482 Vigna mungo HOM05D002209 ORTHO05D004761 1.7e-189 666.0 367 94.0
Glyma.05G243700 Glycine max HOM05D002209 ORTHO05D004761 1.3e-181 639.8 370 88.9
Glyma.08G051500 Glycine max HOM05D002209 ORTHO05D004761 7.1e-180 634.0 367 88.3
Lj4g0012439 Lotus japonicus HOM05D002209 ORTHO05D004761 1.4e-159 566.6 369 78.0
Lalb_Chr16g0387141 Lupinus albus HOM05D002209 ORTHO05D004761 1.6e-155 553.1 369 77.5
Lalb_Chr09g0330521 Lupinus albus HOM05D002209 ORTHO05D004761 3.7e-152 542.0 369 75.9
TPR.G12929 Trifolium pratense HOM05D002209 ORTHO05D004761 7.6e-150 534.3 370 75.7
Lalb_Chr05g0221871 Lupinus albus HOM05D002209 ORTHO05D004761 2.5e-145 519.2 370 72.7
Medtr8g106780 Medicago truncatula HOM05D002209 ORTHO05D004761 2.5e-145 519.2 367 74.1
arahy.Tifrunner.gnm1.ann1.6WJC3X Arachis hypogaea HOM05D002209 ORTHO05D004761 4.8e-144 515.0 407 69.3
Ca_17220_v3 Cicer arietinum L. HOM05D002209 ORTHO05D004761 2.5e-137 492.7 357 73.7
GSVIVG01008394001 Vitis vinifera HOM05D002209 ORTHO05D004761 1.1e-127 460.7 372 66.1
Thecc.03G048800 Theobroma cacao HOM05D002209 ORTHO05D004761 2.2e-125 453.0 373 61.9
Gohir.A09G051300 Gossypium hirsutum HOM05D002209 ORTHO05D004761 3.8e-125 452.2 372 61.8
Gohir.D09G052400 Gossypium hirsutum HOM05D002209 ORTHO05D004761 5.0e-125 451.8 372 61.3
Duzib084G0729 Durio zibethinus HOM05D002209 ORTHO05D004761 8.5e-125 451.1 373 62.2
Gorai.006G057200 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.9e-124 449.9 372 61.3
Duzib205G0470 Durio zibethinus HOM05D002209 ORTHO05D004761 3.2e-124 449.1 373 61.7
PGR083G2774 Punica granatum HOM05D002209 ORTHO05D004761 3.2e-124 449.1 373 64.1
COL.COLO4_05870 Corchorus olitorius HOM05D002209 ORTHO05D004761 7.2e-124 448.0 373 61.4
Dinv29939 Davidia involucrata HOM05D002209 ORTHO05D004761 7.2e-124 448.0 366 62.6
Dinv24643 Davidia involucrata HOM05D002209 ORTHO05D004761 6.7e-122 441.4 365 61.9
Lj9A421T102 Lonicera japonica HOM05D002209 ORTHO05D004761 6.7e-122 441.4 364 62.4
CSS0032919 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.0e-121 439.9 366 61.7
Manes.06G008500 Manihot esculenta HOM05D002209 ORTHO05D004761 4.4e-121 438.7 375 60.3
Rhsim07G0079200 Rhododendron simsii HOM05D002209 ORTHO05D004761 2.2e-120 436.4 365 61.6
Eucgr.B00855 Eucalyptus grandis HOM05D002209 ORTHO05D004761 3.7e-120 435.6 370 59.5
CSS0009925 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.8e-120 435.3 364 61.5
CiPaw.16G090800 Carya illinoinensis HOM05D002209 ORTHO05D004761 5.3e-119 431.8 371 62.3
Nn4g24077 Nelumbo nucifera HOM05D002209 ORTHO05D004761 9.1e-119 431.0 370 60.3
RhsimUnG0064800 Rhododendron simsii HOM05D002209 ORTHO05D004761 5.9e-118 428.3 378 59.3
Psat7g003880 Pisum sativum HOM05D002209 ORTHO05D004761 7.7e-118 427.9 311 73.6
Potri.015G041700 Populus trichocarpa HOM05D002209 ORTHO05D004761 2.2e-117 426.4 370 61.6
TWI81G0085 Tripterygium wilfordii HOM05D002209 ORTHO05D004761 4.2e-116 422.2 371 58.8
Peaxi162Scf01127g00030 Petunia axillaris HOM05D002209 ORTHO05D004761 1.6e-115 420.2 372 56.2
Nn3g18057 Nelumbo nucifera HOM05D002209 ORTHO05D004761 6.1e-115 418.3 372 58.6
Peaxi162Scf00683g00231 Petunia axillaris HOM05D002209 ORTHO05D004761 3.9e-114 415.6 366 57.4
Ciclev10008707m.g Citrus clementina HOM05D002209 ORTHO05D004761 8.8e-114 414.5 369 58.3
CANSAT80G1163 Cannabis sativa HOM05D002209 ORTHO05D004761 3.3e-113 412.5 367 56.7
CANSAT80G2224 Cannabis sativa HOM05D002209 ORTHO05D004761 3.3e-113 412.5 367 56.7
Potri.012G049700 Populus trichocarpa HOM05D002209 ORTHO05D004761 7.4e-113 411.4 370 58.9
Atru.chr9.949 Acer truncatum HOM05D002209 ORTHO05D004761 2.8e-112 409.5 372 58.3
Hma1.2p1_0669F.1_g200340 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 2.8e-112 409.5 370 57.6
Sopen03g037920 Solanum pennellii HOM05D002209 ORTHO05D004761 6.3e-112 408.3 368 55.7
MD00G1160600 Malus domestica HOM05D002209 ORTHO05D004761 1.4e-111 407.1 374 58.8
PGSC0003DMG402005658 Solanum tuberosum HOM05D002209 ORTHO05D004761 3.1e-111 406.0 368 56.0
Cc04_g06630 Coffea canephora HOM05D002209 ORTHO05D004761 5.3e-111 405.2 367 56.9
Nitab4.5_0001158g0020 Nicotiana tabacum HOM05D002209 ORTHO05D004761 5.3e-111 405.2 366 56.0
Solyc03g119030.4 Solanum lycopersicum HOM05D002209 ORTHO05D004761 5.3e-111 405.2 368 55.7
CAN.G1129.31 Capsicum annuum HOM05D002209 ORTHO05D004761 7.0e-111 404.8 368 55.2
Prupe.5G229900 Prunus persica HOM05D002209 ORTHO05D004761 2.0e-110 403.3 370 58.9
RcHm_v2.0_Chr7g0178801 Rosa chinensis HOM05D002209 ORTHO05D004761 2.0e-110 403.3 370 58.6
MBI10_g07297_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 3.5e-110 402.5 372 56.7
Lsat_1_v5_gn_3_1001 Lactuca sativa HOM05D002209 ORTHO05D004761 6.5e-109 398.3 364 58.8
Sc12g0007380 Simmondsia chinensis HOM05D002209 ORTHO05D004761 1.9e-108 396.7 371 55.8
DCAR_011382 Daucus carota HOM05D002209 ORTHO05D004761 4.2e-108 395.6 364 56.9
Sed0007305 Sechium edule HOM05D002209 ORTHO05D004761 1.6e-107 393.7 374 55.1
CsaV3_1G004130 Cucumis sativus L. HOM05D002209 ORTHO05D004761 2.7e-107 392.9 372 55.6
MD14G1233700 Malus domestica HOM05D002209 ORTHO05D004761 4.7e-107 392.1 370 57.0
HanXRQChr05g0144521 Helianthus annuus HOM05D002209 ORTHO05D004761 8.0e-107 391.3 367 56.9
Nitab4.5_0012369g0030 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.4e-106 390.6 383 52.7
THA.LOC104821836 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 4.0e-106 389.0 372 55.9
AT1G48635 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 8.8e-106 387.9 366 56.0
MSTRG.4560 Avicennia marina HOM05D002209 ORTHO05D004761 7.5e-105 384.8 364 55.2
ECA246G4025 Erigeron canadensis HOM05D002209 ORTHO05D004761 2.8e-104 382.9 330 60.3
Actinidia35110 Actinidia chinensis HOM05D002209 ORTHO05D004761 4.8e-104 382.1 326 61.0
FAN18G1515 Fragaria x ananassa HOM05D002209 ORTHO05D004761 6.3e-104 381.7 370 56.5
Nitab4.5_0000150g0110 Nicotiana tabacum HOM05D002209 ORTHO05D004761 1.1e-103 380.9 388 53.9
PSO782G2563 Papaver somniferum HOM05D002209 ORTHO05D004761 1.4e-103 380.6 376 52.9
Sp1g35610 Schrenkiella parvula HOM05D002209 ORTHO05D004761 1.4e-103 380.6 367 55.0
MSTRG.9285 Avicennia marina HOM05D002209 ORTHO05D004761 3.1e-103 379.4 366 53.3
FvH4_5g17050 Fragaria vesca HOM05D002209 ORTHO05D004761 5.4e-103 378.6 370 55.9
Carub.0001s3778 Capsella rubella HOM05D002209 ORTHO05D004761 9.1e-103 377.9 365 54.8
vmacro16528 Vaccinium macrocarpon HOM05D002209 ORTHO05D004761 9.1e-103 377.9 364 55.2
CARHR038280 Cardamine hirsuta HOM05D002209 ORTHO05D004761 1.2e-102 377.5 366 54.1
Aqoxy3G03975 Aquilegia oxysepala HOM05D002209 ORTHO05D004761 3.5e-102 375.9 374 53.5
AL1G55300 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 5.9e-102 375.2 366 53.8
FAN08G3349 Fragaria x ananassa HOM05D002209 ORTHO05D004761 5.9e-102 375.2 367 55.9
TAR629G1642 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.0e-101 374.4 315 60.3
THA.LOC104820369 Tarenaya hassleriana HOM05D002209 ORTHO05D004761 5.0e-101 372.1 369 53.9
PSO063G7528 Papaver somniferum HOM05D002209 ORTHO05D004761 2.5e-100 369.8 367 53.1
A06p04280 Brassica napus HOM05D002209 ORTHO05D004761 7.2e-100 368.2 368 53.3
SalBow1G1036 Salvia bowleyana HOM05D002209 ORTHO05D004761 2.7e-99 366.3 392 49.7
Thhalv10011573m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 3.6e-99 365.9 381 53.0
AL3G31330 Arabidopsis lyrata HOM05D002209 ORTHO05D004761 6.1e-99 365.2 365 53.2
Aa31LG10G5170 Aethionema arabicum HOM05D003754 ORTHO05D004530 8.0e-99 364.8 364 52.5
ClCG06G014470 Citrullus lanatus HOM05D002209 ORTHO05D004761 1.0e-98 364.4 371 52.3
FAN13G0599 Fragaria x ananassa HOM05D002209 ORTHO05D004761 1.8e-98 363.6 368 54.6
BcaB07g33725 Brassica carinata HOM05D002209 ORTHO05D004761 4.0e-98 362.5 367 52.6
EL10Ac8g19603 Beta vulgaris HOM05D002209 ORTHO05D004761 5.2e-98 362.1 406 50.2
Sabra15G0063000 Salix brachista HOM05D002209 ORTHO05D004761 1.2e-97 360.9 486 45.1
BcaC08g43072 Brassica carinata HOM05D002209 ORTHO05D004761 1.5e-97 360.5 367 52.6
CARHR093480 Cardamine hirsuta HOM05D002209 ORTHO05D004761 3.4e-97 359.4 365 52.6
C06p03290 Brassica napus HOM05D002209 ORTHO05D004761 7.5e-97 358.2 367 52.3
AT3G18160 Arabidopsis thaliana HOM05D002209 ORTHO05D004761 4.9e-96 355.5 365 51.5
TAR622G1360 Trochodendron aralioides HOM05D002209 ORTHO05D004761 1.4e-95 354.0 317 59.9
Duzib068G1457 Durio zibethinus HOM05D002209 ORTHO05D004761 4.1e-95 352.4 371 51.5
BolC3t17231H Brassica oleracea HOM05D002209 ORTHO05D004761 7.0e-95 351.7 371 52.0
BraA06t23631Z Brassica rapa HOM05D002209 ORTHO05D004761 1.6e-94 350.5 404 48.0
Sabra15G0055400 Salix brachista HOM05D002209 ORTHO05D004761 2.0e-94 350.1 508 42.7
Migut.D01447 Erythranthe guttata HOM05D002209 ORTHO05D004761 2.7e-94 349.7 363 49.6
Sp3g16270 Schrenkiella parvula HOM05D002209 ORTHO05D004761 2.7e-94 349.7 367 51.5
BcaB04g18980 Brassica carinata HOM05D002209 ORTHO05D004761 7.7e-94 348.2 367 51.5
A03p40560 Brassica napus HOM05D002209 ORTHO05D004761 1.0e-93 347.8 367 51.2
Carub.0003s1787 Capsella rubella HOM05D002209 ORTHO05D004761 1.3e-93 347.4 365 51.2
BraA03t13213Z Brassica rapa HOM05D002209 ORTHO05D004761 1.7e-93 347.1 371 51.5
BolC6t35461H Brassica oleracea HOM05D002209 ORTHO05D004761 8.6e-93 344.7 400 47.8
MBI16_g47222_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 8.6e-93 344.7 374 49.7
HPP92_008203 Vanilla planifolia HOM05D002209 ORTHO05D004761 2.5e-92 343.2 372 50.0
C03p49370 Brassica napus HOM05D002209 ORTHO05D004761 5.6e-92 342.0 381 50.7
BcaB04g20791 Brassica carinata HOM05D002209 ORTHO05D004761 9.5e-92 341.3 365 50.7
Nitab4.5_0012395g0010 Nicotiana tabacum HOM05D002209 ORTHO05D004761 4.7e-91 339.0 314 57.0
Aa31LG8G4990 Aethionema arabicum HOM05D002209 ORTHO05D004761 6.1e-91 338.6 355 50.4
BcaC09g48771 Brassica carinata HOM05D002209 ORTHO05D004761 1.4e-90 337.4 362 50.8
Cpa.g.sc3.426 Carica papaya HOM05D002209 ORTHO05D004761 1.5e-89 334.0 312 58.0
Haze_18790 Corylus avellana HOM05D002209 ORTHO05D004761 2.0e-89 333.6 566 40.6
Thhalv10020989m.g Eutrema salsugineum HOM05D002209 ORTHO05D004761 9.8e-89 331.3 367 49.3
CDE02G4061 Ceratophyllum demersum HOM05D002209 ORTHO05D004761 1.4e-87 327.4 368 49.2
BcaC01g03707 Brassica carinata HOM05D002209 ORTHO05D004761 5.4e-87 325.5 372 50.0
BraA01t03699Z Brassica rapa HOM05D002209 ORTHO05D007926 5.4e-87 325.5 356 49.4
C01p46070 Brassica napus HOM05D002209 ORTHO05D007926 9.2e-87 324.7 352 50.6
BolC1t04568H Brassica oleracea HOM05D002209 ORTHO05D007926 5.9e-86 322.0 353 49.9
Hund22655 Selenicereus undatus HOM05D002209 ORTHO05D004761 1.0e-85 321.2 354 52.0
SHI19025 Sapria himalayana HOM05D002209 ORTHO05D000001 3.6e-83 312.8 372 46.8
Sed0027899 Sechium edule HOM05D002209 ORTHO05D004761 1.4e-82 310.8 286 54.2
MELO3C017339.2 Cucumis melo HOM05D002209 ORTHO05D004761 3.1e-82 309.7 295 53.9
AUR62002654 Chenopodium quinoa HOM05D002209 ORTHO05D004761 6.4e-80 302.0 310 53.2
SGA_v2.0_scaffold171G38932 Striga asiatica HOM05D002209 ORTHO05D004761 5.6e-76 288.9 478 38.1
Psat0s3278g0200 Pisum sativum HOM05D002209 ORTHO05D004761 2.2e-72 276.9 280 57.1
CSS0022680 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 3.0e-69 266.5 210 64.3
A01p36240 Brassica napus HOM05D002209 ORTHO05D007926 5.6e-68 262.3 299 49.2
Oeu017507.1 Olea europaea HOM05D002209 ORTHO05D004761 1.6e-67 260.8 208 62.5
MBI16_g47372_MAGBIO Magnolia biondii HOM05D002209 ORTHO05D004761 8.1e-67 258.5 299 48.5
Sopen12g020100 Solanum pennellii HOM05D002209 ORTHO05D004761 2.7e-62 243.4 208 57.2
CSS0012524 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.6e-62 242.7 167 73.1
Solyc12g040500.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 4.6e-62 242.7 207 57.5
FAN04G3108 Fragaria x ananassa HOM05D002209 ORTHO05D004761 3.3e-60 236.5 210 59.0
QL10p027517 Quercus lobata HOM05D002209 ORTHO05D004761 3.3e-60 236.5 201 59.7
Zm00001eb098030 Zea mays HOM05D002209 ORTHO05D004761 5.6e-60 235.7 319 42.6
CSS0038011 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.1e-59 231.9 207 57.0
CSS0040553 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 8.1e-59 231.9 207 57.0
AUR62040790 Chenopodium quinoa HOM05D002209 ORTHO05D004761 1.1e-58 231.5 310 44.8
SEGI_04696 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 2.6e-57 226.9 339 41.3
Hma1.2p1_0669F.1_g200330 Hydrangea macrophylla HOM05D002209 ORTHO05D004761 4.4e-57 226.1 163 68.7
Gorai.007G186700 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.3e-56 224.6 166 68.1
Gohir.D08G140100 Gossypium hirsutum HOM05D002209 ORTHO05D004761 2.2e-56 223.8 166 68.1
Gorai.008G042300 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.9e-56 223.4 166 67.5
CSS0005213 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.9e-55 220.7 162 68.5
Gorai.004G122400 Gossypium raimondii HOM05D002209 ORTHO05D004761 2.4e-55 220.3 171 66.1
Mapoly0003s0191 Marchantia polymorpha HOM05D002209 ORTHO05D004761 9.3e-55 218.4 375 35.2
Gohir.D13G126266 Gossypium hirsutum HOM05D002209 ORTHO05D004761 3.1e-50 203.4 165 63.0
Pp3c8_16550 Physcomitrium patens HOM05D002209 ORTHO05D004761 5.3e-50 202.6 375 35.7
Pp3c24_12050 Physcomitrium patens HOM05D002209 ORTHO05D004761 9.9e-49 198.4 374 36.4
Pp3c20_5170 Physcomitrium patens HOM05D002209 ORTHO05D004761 1.2e-46 191.4 374 34.8
PGSC0003DMG400015821 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.6e-46 191.0 155 60.0
AagrBONN_evm.TU.Sc2ySwM_344.1865 Anthoceros agrestis HOM05D002209 ORTHO05D004761 3.5e-46 189.9 388 33.0
CBR_g38112 Chara braunii HOM05D002209 ORTHO05D004761 2.1e-43 180.6 367 32.2
CSS0016222 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 2.8e-43 180.3 189 54.5
Gorai.008G062000 Gossypium raimondii HOM05D002209 ORTHO05D004761 1.1e-39 168.3 130 65.4
SMO367G0254 Selaginella moellendorffii HOM05D002209 ORTHO05D004761 1.4e-39 167.9 378 32.8
unitig_0.g802 Utricularia gibba HOM05D002209 ORTHO05D004761 2.4e-39 167.2 206 42.7
SEGI_01637 Sequoiadendron giganteum HOM05D002209 ORTHO05D004761 5.5e-39 166.0 257 41.6
CSS0034654 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 1.6e-38 164.5 110 76.4
GSVIVG01008387001 Vitis vinifera HOM05D002209 ORTHO05D004761 2.1e-38 164.1 164 54.9
CSS0050298 Camellia sinensis var. sinensis HOM05D002209 ORTHO05D004761 4.8e-35 152.9 152 55.9
CAN.G197.13 Capsicum annuum HOM05D002209 ORTHO05D004761 4.8e-35 152.9 123 61.0
Sopen12g020080 Solanum pennellii HOM05D002209 ORTHO05D004761 6.2e-35 152.5 156 48.7
Solyc12g040480.2 Solanum lycopersicum HOM05D002209 ORTHO05D004761 8.1e-35 152.1 156 48.1
ATR0326G049 Amborella trichopoda HOM05D002209 ORTHO05D004761 1.6e-27 127.9 172 41.3
Os09g0314300 Oryza sativa ssp. japonica HOM05D002209 ORTHO05D004761 2.8e-27 127.1 128 50.0
PGSC0003DMG400015822 Solanum tuberosum HOM05D002209 ORTHO05D004761 1.4e-26 124.8 135 47.4
Oeu053224.1 Olea europaea HOM05D002209 ORTHO05D004761 1.6e-22 111.3 136 44.1
Oeu017505.1 Olea europaea HOM05D002209 ORTHO05D004761 2.1e-22 110.9 139 43.9
AagrBONN_evm.TU.Sc2ySwM_368.2096 Anthoceros agrestis HOM05D002209 ORTHO05D004761 5.7e-12 76.3 310 27.4
PRCOL_00001207 Prasinoderma coloniale HOM05D006727 ORTHO05D008408 9.7e-12 75.5 255 23.9
arahy.Tifrunner.gnm1.ann1.C5B8HT Arachis hypogaea HOM05D002209 ORTHO05D004761 2.6e-09 67.4 43 74.4


User provided reference genes

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