Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G326200 Phaseolus vulgaris HOM05D003900 ORTHO05D005009 5.8e-245 851.3 761 100.0
VMungo0251G1173 Vigna mungo HOM05D003900 ORTHO05D005009 3.9e-201 705.7 759 88.1
Lj4g0005982 Lotus japonicus HOM05D003900 ORTHO05D005009 6.2e-122 442.6 437 67.5
Glyma.16G031800 Glycine max HOM05D003900 ORTHO05D005009 2.9e-111 407.1 762 73.1
Lalb_Chr04g0259301 Lupinus albus HOM05D003900 ORTHO05D005009 2.7e-101 374.0 774 69.0
arahy.Tifrunner.gnm1.ann1.K45FBX Arachis hypogaea HOM05D003900 ORTHO05D005009 4.2e-94 350.1 772 70.1
Psat7g005640 Pisum sativum HOM05D003900 ORTHO05D005009 1.0e-92 345.5 607 80.6
arahy.Tifrunner.gnm1.ann1.U9H0N8 Arachis hypogaea HOM05D003900 ORTHO05D005009 1.8e-92 344.7 452 56.0
TPR.G2949 Trifolium pratense HOM05D003900 ORTHO05D005009 1.5e-88 331.6 742 68.6
Medtr8g098755 Medicago truncatula HOM05D003900 ORTHO05D005009 6.3e-82 309.7 606 79.5
Dinv43863 Davidia involucrata HOM05D003900 ORTHO05D005009 2.6e-75 287.7 366 47.0
CANSAT56G3111 Cannabis sativa HOM05D003900 ORTHO05D005009 7.4e-75 286.2 357 46.2
TAR629G0263 Trochodendron aralioides HOM05D003900 ORTHO05D005009 7.4e-75 286.2 364 44.8
CiPaw.01G067300 Carya illinoinensis HOM05D003900 ORTHO05D005009 4.8e-74 283.5 332 48.5
QL04p055515 Quercus lobata HOM05D003900 ORTHO05D005009 6.3e-74 283.1 330 47.0
GSVIVG01026966001 Vitis vinifera HOM05D003900 ORTHO05D005009 2.4e-73 281.2 319 48.0
CiPaw.01G067500 Carya illinoinensis HOM05D003900 ORTHO05D005009 3.1e-73 280.8 337 46.9
CiPaw.01G066800 Carya illinoinensis HOM05D003900 ORTHO05D005009 5.3e-73 280.0 332 47.0
CiPaw.01G067100 Carya illinoinensis HOM05D003900 ORTHO05D005009 2.0e-72 278.1 285 51.9
Haze_15564 Corylus avellana HOM05D003900 ORTHO05D005009 3.2e-70 270.8 360 44.7
CSS0000093 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 5.5e-70 270.0 401 51.4
CSS0016355 Camellia sinensis var. sinensis HOM05D003900 ORTHO05D005009 5.5e-70 270.0 401 51.4
CiPaw.01G066600 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.8e-68 265.0 285 50.5
CiPaw.01G067400 Carya illinoinensis HOM05D003900 ORTHO05D005009 3.0e-68 264.2 284 51.1
Atru.chr5.581 Acer truncatum HOM05D003900 ORTHO05D005009 4.0e-68 263.8 337 43.9
CiPaw.01G067200 Carya illinoinensis HOM05D003900 ORTHO05D005009 1.1e-67 262.3 284 49.3
RcHm_v2.0_Chr1g0357681 Rosa chinensis HOM05D003900 ORTHO05D005009 5.7e-67 260.0 338 42.3
Atru.chr5.563 Acer truncatum HOM05D003900 ORTHO05D005009 7.5e-67 259.6 340 43.2
Prupe.2G177500 Prunus persica HOM05D003900 ORTHO05D005009 1.1e-65 255.8 332 44.6
RcHm_v2.0_Chr7g0228211 Rosa chinensis HOM05D003900 ORTHO05D005009 3.1e-65 254.2 339 43.1
VMungo0251G0997 Vigna mungo HOM05D003900 ORTHO05D005009 1.2e-64 252.3 310 49.7
Sc01g0003220 Simmondsia chinensis HOM05D003900 ORTHO05D005009 5.9e-64 250.0 359 39.3
Ca_17228_v3 Cicer arietinum L. HOM05D000113 ORTHO05D005009 1.3e-63 248.8 594 74.2
Manes.01G252300 Manihot esculenta HOM05D003900 ORTHO05D005009 1.3e-63 248.8 334 43.7
FAN04G0755 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.7e-63 248.4 337 43.0
MD07G1131300 Malus domestica HOM05D003900 ORTHO05D005009 1.7e-63 248.4 339 41.6
FvH4_5g32150 Fragaria vesca HOM05D003900 ORTHO05D005009 6.5e-63 246.5 325 43.4
Nitab4.5_0010695g0010 Nicotiana tabacum HOM05D003900 ORTHO05D005009 1.2e-61 242.3 323 44.6
Solyc01g095110.4 Solanum lycopersicum HOM05D003900 ORTHO05D005009 2.7e-61 241.1 289 46.4
FvH4_5g03011 Fragaria vesca HOM05D003900 ORTHO05D005009 4.7e-61 240.4 342 42.1
Rhsim07G0010500 Rhododendron simsii HOM05D003900 ORTHO05D005009 1.0e-60 239.2 360 43.6
PGR142G0969 Punica granatum HOM05D003900 ORTHO05D005009 2.3e-60 238.0 323 41.5
Nn1g01685 Nelumbo nucifera HOM05D003900 ORTHO05D005009 3.0e-60 237.7 366 51.1
Nitab4.5_0000915g0110 Nicotiana tabacum HOM05D003900 ORTHO05D005009 4.0e-60 237.3 323 44.0
Thecc.01G352500 Theobroma cacao HOM05D003900 ORTHO05D005009 4.0e-60 237.3 370 40.5
Sopen01g038900 Solanum pennellii HOM05D003900 ORTHO05D005009 1.2e-59 235.7 289 45.7
PGSC0003DMG400000195 Solanum tuberosum HOM05D003900 ORTHO05D005009 1.2e-59 235.7 321 43.9
CAN.G78.130 Capsicum annuum HOM05D003900 ORTHO05D005009 2.0e-59 235.0 332 43.7
vmacro13229 Vaccinium macrocarpon HOM05D003900 ORTHO05D005009 4.4e-59 233.8 331 43.5
FAN03G2211 Fragaria x ananassa HOM05D003900 ORTHO05D005009 5.7e-59 233.4 356 39.3
Manes.05G029400 Manihot esculenta HOM05D003900 ORTHO05D005009 5.7e-59 233.4 330 41.8
FAN10G3614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.7e-58 231.9 350 39.4
Cc02_g38560 Coffea canephora HOM05D003900 ORTHO05D005009 2.2e-58 231.5 360 40.3
FvH4_7g15360 Fragaria vesca HOM05D003900 ORTHO05D005009 4.8e-58 230.3 356 38.8
Sabra14G0065500 Salix brachista HOM05D003900 ORTHO05D005009 4.8e-58 230.3 367 38.7
Potri.014G090400 Populus trichocarpa HOM05D003900 ORTHO05D005009 6.3e-58 229.9 365 38.6
Duzib138G1643 Durio zibethinus HOM05D003900 ORTHO05D005009 7.0e-57 226.5 369 39.0
Peaxi162Scf00020g00155 Petunia axillaris HOM05D003900 ORTHO05D005009 1.2e-56 225.7 284 45.1
Gohir.D12G110200 Gossypium hirsutum HOM05D003900 ORTHO05D005009 3.5e-56 224.2 327 39.8
Gorai.008G119500 Gossypium raimondii HOM05D003900 ORTHO05D005009 1.3e-55 222.2 327 39.4
AUR62004412 Chenopodium quinoa HOM05D003900 ORTHO05D005009 2.2e-55 221.5 363 37.5
TWI23G0979 Tripterygium wilfordii HOM05D003900 ORTHO05D005009 2.2e-55 221.5 398 46.0
THA.LOC104817316 Tarenaya hassleriana HOM05D003900 ORTHO05D005009 6.5e-55 219.9 282 40.4
Gohir.A12G106900 Gossypium hirsutum HOM05D003900 ORTHO05D005009 8.5e-55 219.5 337 39.5
Ah.15g096610 Amaranthus hybridus HOM05D003900 ORTHO05D005009 2.5e-54 218.0 323 39.6
AUR62022618 Chenopodium quinoa HOM05D003900 ORTHO05D005009 2.7e-53 214.5 361 38.5
FAN06G2614 Fragaria x ananassa HOM05D003900 ORTHO05D005009 3.6e-53 214.2 353 37.1
Lj7C507T1 Lonicera japonica HOM05D003900 ORTHO05D005009 8.0e-53 213.0 370 37.6
VMungo1127G1354 Vigna mungo HOM05D003900 ORTHO05D005009 1.4e-52 212.2 189 61.9
Aa31LG10G15460 Aethionema arabicum HOM05D003900 ORTHO05D005009 5.2e-52 210.3 280 40.0
FAN06G4981 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.5e-51 208.8 324 38.0
MD01G1071400 Malus domestica HOM05D003900 ORTHO05D005009 2.0e-51 208.4 297 52.9
CARHR171850 Cardamine hirsuta HOM05D003900 ORTHO05D005009 5.7e-51 206.8 342 36.5
Eucgr.E00097 Eucalyptus grandis HOM05D003900 ORTHO05D005009 7.5e-51 206.5 322 38.8
MBI11_g19575_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 9.8e-51 206.1 407 44.2
Aa31LG1G27520 Aethionema arabicum HOM05D003900 ORTHO05D005009 1.3e-50 205.7 291 39.9
AL5G43880 Arabidopsis lyrata HOM05D003900 ORTHO05D005009 2.2e-50 204.9 329 36.5
COL.COLO4_12777 Corchorus olitorius HOM05D003900 ORTHO05D005009 4.9e-50 203.8 280 41.1
FAN06G0440 Fragaria x ananassa HOM05D003900 ORTHO05D005009 6.3e-50 203.4 211 47.9
EL10Ac1g00355 Beta vulgaris HOM05D003900 ORTHO05D005009 8.3e-50 203.0 318 38.4
BcaB02g07375 Brassica carinata HOM05D003900 ORTHO05D005009 8.3e-50 203.0 343 37.3
HanXRQChr04g0120801 Helianthus annuus HOM05D003900 ORTHO05D005009 8.3e-50 203.0 356 35.4
A07p25540 Brassica napus HOM05D003900 ORTHO05D005009 1.1e-49 202.6 283 41.0
BcaC08g45129 Brassica carinata HOM05D003900 ORTHO05D005009 1.4e-49 202.2 283 40.6
BolC6t37920H Brassica oleracea HOM05D003900 ORTHO05D005009 1.4e-49 202.2 318 38.4
C06p27530 Brassica napus HOM05D003900 ORTHO05D005009 1.8e-49 201.8 318 38.4
CsaV3_7G025780 Cucumis sativus L. HOM05D003900 ORTHO05D005009 1.8e-49 201.8 216 46.8
FAN01G0431 Fragaria x ananassa HOM05D003900 ORTHO05D005009 1.8e-49 201.8 214 47.7
AT3G61520 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 2.4e-49 201.4 290 37.9
Dinv32521 Davidia involucrata HOM05D003900 ORTHO05D005009 2.4e-49 201.4 199 52.3
BraA07t30195Z Brassica rapa HOM05D003900 ORTHO05D005009 4.1e-49 200.7 283 41.0
Medtr3g088810 Medicago truncatula HOM05D003900 ORTHO05D005009 4.1e-49 200.7 553 58.0
Carub.0005s2821 Capsella rubella HOM05D003900 ORTHO05D005009 5.4e-49 200.3 283 38.5
Actinidia20162 Actinidia chinensis HOM05D003900 ORTHO05D005009 7.0e-49 199.9 203 50.7
Thhalv10001319m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 7.0e-49 199.9 291 38.5
AT5G28370 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 9.2e-49 199.5 329 35.6
AT5G28460 Arabidopsis thaliana HOM05D003900 ORTHO05D005009 9.2e-49 199.5 329 35.6
Migut.B01798 Erythranthe guttata HOM05D003900 ORTHO05D005009 2.0e-48 198.4 322 37.3
Thhalv10022571m.g Eutrema salsugineum HOM05D003900 ORTHO05D005009 5.9e-48 196.8 364 34.9
Lsat_1_v5_gn_7_2720 Lactuca sativa HOM05D003900 ORTHO05D005009 5.9e-48 196.8 288 40.3
Oeu015216.1 Olea europaea HOM05D003900 ORTHO05D005009 5.9e-48 196.8 196 50.0
PSO266G0010 Papaver somniferum HOM05D003900 ORTHO05D005009 1.0e-47 196.1 214 45.8
PSO384G0446 Papaver somniferum HOM05D003900 ORTHO05D005009 1.3e-47 195.7 214 46.3
MELO3C029134.2 Cucumis melo HOM05D003900 ORTHO05D005009 2.3e-47 194.9 217 46.5
SGA_v2.0_scaffold4G02283 Striga asiatica HOM05D003900 ORTHO05D005009 3.8e-47 194.1 269 39.4
Sp4g28170 Schrenkiella parvula HOM05D003900 ORTHO05D005009 5.0e-47 193.7 292 37.3
Duzib133G1046 Durio zibethinus HOM05D003900 ORTHO05D005009 4.3e-46 190.7 327 37.9
SalBow3G3666 Salvia bowleyana HOM05D003900 ORTHO05D005009 7.3e-46 189.9 330 36.1
ClCG09G009150 Citrullus lanatus HOM05D003900 ORTHO05D005009 1.2e-45 189.1 217 45.2
RcHm_v2.0_Chr3g0468501 Rosa chinensis HOM05D003900 ORTHO05D005009 1.4e-44 185.7 337 36.2
Sed0017189 Sechium edule HOM05D003900 ORTHO05D005009 1.3e-42 179.1 221 43.0
RcHm_v2.0_Chr5g0017031 Rosa chinensis HOM05D003900 ORTHO05D005009 6.4e-42 176.8 157 56.7
ECA236G1505 Erigeron canadensis HOM05D003900 ORTHO05D005009 8.3e-42 176.4 215 45.1
FAN10G1060 Fragaria x ananassa HOM05D003900 ORTHO05D005009 5.4e-41 173.7 161 52.2
DCAR_025213 Daucus carota HOM05D003900 ORTHO05D005009 7.8e-40 169.9 360 35.3
Ciclev10019067m.g Citrus clementina HOM05D003900 ORTHO05D005009 3.6e-37 161.0 335 33.7
Cfa003873 Carpinus fangiana HOM05D003900 ORTHO05D005009 8.0e-37 159.8 383 33.9
ATR0721G158 Amborella trichopoda HOM05D003900 ORTHO05D005009 2.2e-34 151.8 246 38.2
HPP92_011504 Vanilla planifolia HOM05D003900 ORTHO05D005009 7.0e-33 146.7 322 32.0
Aqoxy7G01955 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 2.0e-32 145.2 339 30.7
CDE10G0308 Ceratophyllum demersum HOM05D003834 ORTHO05D004483 1.5e-30 139.0 187 40.6
FAN18G4460 Fragaria x ananassa HOM05D003900 ORTHO05D005009 4.0e-28 131.0 220 37.7
FAN18G1403 Fragaria x ananassa HOM05D003900 ORTHO05D005009 5.4e-25 120.6 102 57.8
RcHm_v2.0_Chr7g0228291 Rosa chinensis HOM05D003900 ORTHO05D005009 7.1e-25 120.2 92 63.0
CARHR141390 Cardamine hirsuta HOM05D003900 ORTHO05D005009 1.6e-24 119.0 251 30.7
MBI11_g19576_MAGBIO Magnolia biondii HOM05D003900 ORTHO05D005009 6.0e-24 117.1 267 31.1
VMungo1309G0982 Vigna mungo HOM05D003900 ORTHO05D005009 2.3e-23 115.2 143 49.0
Lj4g0021408 Lotus japonicus HOM05D003900 ORTHO05D015804 3.1e-20 104.8 128 46.9
Aqoxy4G00899 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 5.4e-17 94.0 180 34.4
CAN.G874.71 Capsicum annuum HOM05D003900 ORTHO05D005009 4.6e-16 90.9 112 42.0
CAN.G853.45 Capsicum annuum HOM05D003900 ORTHO05D005009 1.0e-15 89.7 152 34.9
CAN.G430.2 Capsicum annuum HOM05D003900 ORTHO05D005009 1.6e-13 82.4 125 37.6
SEGI_36951 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 2.8e-13 81.6 148 32.4
Aqoxy2G02642 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 3.1e-12 78.2 180 30.0
CAN.G460.4 Capsicum annuum HOM05D003900 ORTHO05D005009 6.8e-12 77.0 94 41.5
SEGI_22559 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 7.6e-11 73.6 87 43.7
CAN.G1005.1 Capsicum annuum HOM05D003900 ORTHO05D005009 4.9e-10 70.9 109 38.5
CARHR141380 Cardamine hirsuta HOM05D003900 ORTHO05D005009 4.9e-10 70.9 68 51.5
SEGI_08205 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 6.4e-10 70.5 87 42.5
Aqoxy7G01324 Aquilegia oxysepala HOM05D003900 ORTHO05D005009 1.1e-09 69.7 187 28.9
SEGI_03438 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 1.4e-09 69.3 93 37.6
CAN.G609.3 Capsicum annuum HOM05D003900 ORTHO05D005009 4.2e-09 67.8 45 66.7
FAN08G3007 Fragaria x ananassa HOM05D003900 ORTHO05D005009 5.4e-09 67.4 49 61.2
Aqoxy7G03291 Aquilegia oxysepala HOM05D003900 ORTHO05D016547 3.5e-08 64.7 148 29.7
SEGI_18390 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 3.5e-08 64.7 88 40.9
Carub.0002s2595 Capsella rubella HOM05D006918 ORTHO05D008525 4.6e-08 64.3 177 28.8
SEGI_28461 Sequoiadendron giganteum HOM05D000004 ORTHO05D000002 4.6e-08 64.3 239 26.8
Potri.017G033000 Populus trichocarpa HOM05D008684 ORTHO05D010796 7.8e-08 63.5 125 30.4
SEGI_05946 Sequoiadendron giganteum HOM05D003900 ORTHO05D050885 1.0e-07 63.2 112 34.8
CAN.G1005.2 Capsicum annuum HOM05D003900 ORTHO05D005009 1.3e-07 62.8 43 62.8
CAN.G569.38 Capsicum annuum HOM05D007956 ORTHO05D010152 1.3e-07 62.8 117 32.5
Medtr7g082160 Medicago truncatula HOM05D008684 ORTHO05D010796 1.7e-07 62.4 227 24.7
Zm00001eb280170 Zea mays HOM05D003900 ORTHO05D005009 1.7e-07 62.4 72 40.3
AL2G39540 Arabidopsis lyrata HOM05D006918 ORTHO05D008525 3.0e-07 61.6 177 28.8
Ca_08075_v3 Cicer arietinum L. HOM05D008684 ORTHO05D010796 3.9e-07 61.2 226 23.5
TPR.G29077 Trifolium pratense HOM05D008684 ORTHO05D010796 5.1e-07 60.8 216 23.6
Migut.K01310 Erythranthe guttata HOM05D006569 ORTHO05D007515 6.6e-07 60.5 207 24.6
Zm00001eb373330 Zea mays HOM05D000424 ORTHO05D000355 6.6e-07 60.5 118 27.1
CiPaw.01G066500 Carya illinoinensis HOM05D003900 ORTHO05D005009 8.7e-07 60.1 81 75.3
Cc00_g14260 Coffea canephora HOM05D007700 ORTHO05D009669 1.5e-06 59.3 180 22.8
Cc11_g04710 Coffea canephora HOM05D005362 ORTHO05D006895 1.5e-06 59.3 134 30.6
Gohir.D08G154250 Gossypium hirsutum HOM05D003900 ORTHO05D005009 1.5e-06 59.3 53 50.9
Aa31LG6G13480 Aethionema arabicum HOM05D000891 ORTHO05D000761 1.9e-06 58.9 206 20.4
Sp5g34130 Schrenkiella parvula HOM05D006918 ORTHO05D008525 1.9e-06 58.9 174 27.6
Solyc02g080170.1 Solanum lycopersicum HOM05D007956 ORTHO05D010152 1.9e-06 58.9 117 29.9
Hma1.2p1_0384F.1_g140800 Hydrangea macrophylla HOM05D005362 ORTHO05D006895 2.5e-06 58.5 134 30.6
Sopen02g024890 Solanum pennellii HOM05D007956 ORTHO05D010152 2.5e-06 58.5 117 29.1
Actinidia35047 Actinidia chinensis HOM05D005362 ORTHO05D006895 4.3e-06 57.8 134 28.4
MBI06_g05054_MAGBIO Magnolia biondii HOM05D005362 ORTHO05D006895 4.3e-06 57.8 139 28.8
PGSC0003DMG400002071 Solanum tuberosum HOM05D007956 ORTHO05D010152 4.3e-06 57.8 117 29.9
VMungo0540G1210 Vigna mungo HOM05D003900 ORTHO05D005009 4.3e-06 57.8 36 75.0
HanXRQChr05g0154331 Helianthus annuus HOM05D005362 ORTHO05D006895 5.6e-06 57.4 134 29.1
Lsat_1_v5_gn_5_23641 Lactuca sativa HOM05D005362 ORTHO05D006895 5.6e-06 57.4 134 29.9
VMungo1215G2382 Vigna mungo HOM05D006078 ORTHO05D008109 5.6e-06 57.4 31 80.6
Sed0015131 Sechium edule HOM05D000242 ORTHO05D009669 9.6e-06 56.6 209 23.4
SEGI_07919 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 9.6e-06 56.6 70 42.9
SEGI_36939 Sequoiadendron giganteum HOM05D003900 ORTHO05D005009 9.6e-06 56.6 65 38.5


User provided reference genes

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