Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G322100 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.5e-311 1072.0 549 100.0
VMungo0251G0467 Vigna mungo HOM05D004684 ORTHO05D006904 1.4e-304 1048.9 549 97.3
Glyma.08G047100 Glycine max HOM05D004684 ORTHO05D006904 2.6e-295 1018.1 550 94.4
Glyma.05G240000 Glycine max HOM05D004684 ORTHO05D006904 5.4e-293 1010.4 549 93.6
arahy.Tifrunner.gnm1.ann1.14QJGF Arachis hypogaea HOM05D004684 ORTHO05D006904 1.0e-275 953.0 549 87.8
Lj4g0011200 Lotus japonicus HOM05D004684 ORTHO05D006904 1.1e-274 949.5 552 88.4
arahy.Tifrunner.gnm1.ann1.1TG9FP Arachis hypogaea HOM05D004684 ORTHO05D006904 4.3e-274 947.6 549 87.4
Lj4g0013294 Lotus japonicus HOM05D004684 ORTHO05D006904 2.0e-271 938.7 549 87.2
TPR.G38256 Trifolium pratense HOM05D004684 ORTHO05D006904 8.4e-270 933.3 551 86.6
Lalb_Chr09g0330801 Lupinus albus HOM05D004684 ORTHO05D006904 1.6e-268 929.1 554 84.5
Medtr5g055940 Medicago truncatula HOM05D004684 ORTHO05D006904 5.6e-266 920.6 547 85.9
Ca_04899_v3 Cicer arietinum L. HOM05D004684 ORTHO05D006904 9.6e-266 919.8 549 85.6
Thecc.04G266300 Theobroma cacao HOM05D004684 ORTHO05D006904 4.9e-262 907.5 550 82.0
Gohir.D09G232200 Gossypium hirsutum HOM05D004684 ORTHO05D006904 4.3e-258 894.4 550 80.5
QL06p021563 Quercus lobata HOM05D004684 ORTHO05D006904 7.3e-258 893.6 568 79.0
Duzib212G0777 Durio zibethinus HOM05D004684 ORTHO05D006904 1.3e-257 892.9 550 80.9
CiPaw.01G176700 Carya illinoinensis HOM05D004684 ORTHO05D006904 4.8e-257 891.0 550 81.1
Gohir.A09G231100 Gossypium hirsutum HOM05D004684 ORTHO05D006904 4.8e-257 891.0 550 80.2
Prupe.1G050600 Prunus persica HOM05D004684 ORTHO05D006904 5.3e-256 887.5 554 80.0
Gorai.006G255000 Gossypium raimondii HOM05D004684 ORTHO05D006904 1.5e-255 885.9 566 78.4
Cfa014797 Carpinus fangiana HOM05D004684 ORTHO05D006904 5.8e-255 884.0 595 76.5
CSS0041578 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 4.9e-254 880.9 550 79.1
Manes.03G157750 Manihot esculenta HOM05D004684 ORTHO05D006904 2.4e-253 878.6 552 79.3
CSS0049189 Camellia sinensis var. sinensis HOM05D004684 ORTHO05D006904 4.2e-253 877.9 550 78.7
Haze_11481 Corylus avellana HOM05D004684 ORTHO05D006904 1.2e-252 876.3 579 77.4
Rhsim04G0170900 Rhododendron simsii HOM05D004684 ORTHO05D006904 8.7e-251 870.2 550 78.2
CANSAT78G0903 Cannabis sativa HOM05D004684 ORTHO05D006904 1.1e-250 869.8 551 78.8
RcHm_v2.0_Chr7g0203561 Rosa chinensis HOM05D004684 ORTHO05D006904 1.9e-250 869.0 556 77.7
TWI09G1097 Tripterygium wilfordii HOM05D004684 ORTHO05D006904 2.5e-250 868.6 553 78.3
Ciclev10004652m.g Citrus clementina HOM05D004684 ORTHO05D006904 1.3e-249 866.3 565 77.9
Sc19g0005610 Simmondsia chinensis HOM05D004684 ORTHO05D006904 3.7e-249 864.8 550 78.7
FvH4_4g05030 Fragaria vesca HOM05D004684 ORTHO05D006904 1.8e-248 862.4 578 75.1
MD16G1228500 Malus domestica HOM05D004684 ORTHO05D006904 2.0e-247 859.0 557 77.4
Sed0004125 Sechium edule HOM05D004684 ORTHO05D006904 2.6e-247 858.6 575 76.2
Potri.008G172700 Populus trichocarpa HOM05D004684 ORTHO05D006904 4.5e-247 857.8 556 77.2
THA.LOC104804573 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 3.2e-245 851.7 550 76.5
AUR62015690 Chenopodium quinoa HOM05D004684 ORTHO05D006904 2.1e-244 849.0 550 75.6
Cpa.g.sc59.16 Carica papaya HOM05D004684 ORTHO05D006904 6.0e-244 847.4 562 76.3
AUR62031623 Chenopodium quinoa HOM05D004684 ORTHO05D006904 1.5e-242 842.8 551 75.3
vmacro08564 Vaccinium macrocarpon HOM05D004684 ORTHO05D006904 2.5e-242 842.0 525 79.0
MELO3C023021.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.3e-241 839.7 560 77.0
PGR031G2768 Punica granatum HOM05D004684 ORTHO05D006904 1.6e-241 839.3 550 76.0
Solyc09g090840.3 Solanum lycopersicum HOM05D004684 ORTHO05D006904 2.4e-240 835.5 573 72.8
CARHR100400 Cardamine hirsuta HOM05D004684 ORTHO05D006904 1.5e-239 832.8 549 74.9
HanXRQChr01g0023061 Helianthus annuus HOM05D004684 ORTHO05D006904 1.5e-239 832.8 546 75.5
THA.LOC104808741 Tarenaya hassleriana HOM05D004684 ORTHO05D006904 5.8e-239 830.9 553 75.6
Migut.G00560 Erythranthe guttata HOM05D004684 ORTHO05D006904 7.6e-239 830.5 552 75.4
Ah.04g153790 Amaranthus hybridus HOM05D004684 ORTHO05D006904 4.9e-238 827.8 559 73.3
Thhalv10002467m.g Eutrema salsugineum HOM05D004684 ORTHO05D006904 1.4e-237 826.2 552 74.6
AT1G48520 Arabidopsis thaliana HOM05D004684 ORTHO05D006904 2.5e-237 825.5 552 74.5
Carub.0003s2695 Capsella rubella HOM05D004684 ORTHO05D006904 2.5e-237 825.5 551 73.5
Eucgr.G01176 Eucalyptus grandis HOM05D004684 ORTHO05D006904 3.2e-237 825.1 549 75.4
Sopen09g033800 Solanum pennellii HOM05D004684 ORTHO05D006904 5.5e-237 824.3 598 70.7
ECA248G0897 Erigeron canadensis HOM05D004684 ORTHO05D006904 2.7e-236 822.0 546 75.3
Sabra10G0042300 Salix brachista HOM05D004684 ORTHO05D006904 1.3e-235 819.7 596 70.8
Nn1g02992 Nelumbo nucifera HOM05D004684 ORTHO05D006904 2.3e-235 818.9 498 79.3
PSO384G0234 Papaver somniferum HOM05D004684 ORTHO05D006904 3.0e-235 818.5 555 73.9
AL3G43250 Arabidopsis lyrata HOM05D004684 ORTHO05D006904 3.9e-235 818.1 552 73.9
Sp3g22110 Schrenkiella parvula HOM05D004684 ORTHO05D006904 3.9e-235 818.1 551 73.3
ClCG06G007290 Citrullus lanatus HOM05D004684 ORTHO05D006904 2.2e-233 812.4 576 73.1
Aqoxy5G00132 Aquilegia oxysepala HOM05D004684 ORTHO05D006904 4.8e-233 811.2 549 73.4
Hund24872 Selenicereus undatus HOM05D004684 ORTHO05D006904 4.8e-233 811.2 666 64.4
MBI07_g08913_MAGBIO Magnolia biondii HOM05D004684 ORTHO05D006904 4.5e-231 804.7 535 74.2
Nitab4.5_0005154g0090 Nicotiana tabacum HOM05D004684 ORTHO05D006904 4.5e-231 804.7 588 70.9
Eucgr.H02859 Eucalyptus grandis HOM05D004684 ORTHO05D006904 2.9e-230 802.0 549 73.8
BcaC01g03327 Brassica carinata HOM05D004684 ORTHO05D006904 2.5e-229 798.9 552 71.7
Lalb_Chr05g0222141 Lupinus albus HOM05D004684 ORTHO05D006904 3.6e-228 795.0 443 89.4
A03p43590 Brassica napus HOM05D004684 ORTHO05D006904 1.8e-227 792.7 553 72.2
FAN22G2229 Fragaria x ananassa HOM05D004684 ORTHO05D006904 3.9e-227 791.6 610 68.0
Aa31LG8G11000 Aethionema arabicum HOM05D004684 ORTHO05D006904 5.1e-227 791.2 551 73.0
BraA03t13496Z Brassica rapa HOM05D004684 ORTHO05D006904 8.8e-227 790.4 559 71.4
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 1.3e-225 786.6 462 83.1
Os11g0544800 Oryza sativa ssp. japonica HOM05D004684 ORTHO05D006904 1.7e-225 786.2 535 72.9
ATR0787G095 Amborella trichopoda HOM05D004684 ORTHO05D006904 8.2e-225 783.9 523 74.4
C03p53620 Brassica napus HOM05D004684 ORTHO05D006904 1.1e-224 783.5 555 70.8
BolC3t17622H Brassica oleracea HOM05D004684 ORTHO05D006904 5.3e-224 781.2 561 70.1
Zm00001eb197630 Zea mays HOM05D004684 ORTHO05D006904 2.6e-223 778.9 528 73.1
Duzib151G0232 Durio zibethinus HOM05D004684 ORTHO05D006904 4.7e-220 768.1 550 71.6
TAR636G2335 Trochodendron aralioides HOM05D002740 ORTHO05D003126 2.6e-218 762.3 520 73.8
Dinv29794 Davidia involucrata HOM05D004684 ORTHO05D006904 2.4e-216 755.7 494 77.7
PGSC0003DMG400001555 Solanum tuberosum HOM05D004684 ORTHO05D006904 3.8e-214 748.4 539 71.2
EL10Ac3g06680 Beta vulgaris HOM05D004684 ORTHO05D006904 2.1e-212 742.7 597 65.3
Lsat_1_v5_gn_1_75460 Lactuca sativa HOM05D004684 ORTHO05D006904 2.6e-210 735.7 562 68.3
Potri.010G064700 Populus trichocarpa HOM05D004684 ORTHO05D006904 1.2e-207 726.9 491 74.9
Nitab4.5_0001041g0120 Nicotiana tabacum HOM05D004684 ORTHO05D006904 7.7e-207 724.2 588 65.1
SalBow2G2567 Salvia bowleyana HOM05D004684 ORTHO05D006904 7.7e-207 724.2 546 68.7
CAN.G812.19 Capsicum annuum HOM05D004684 ORTHO05D006904 6.5e-206 721.1 484 74.2
PSO832G1147 Papaver somniferum HOM05D004684 ORTHO05D006904 4.2e-205 718.4 489 72.2
HPP92_005111 Vanilla planifolia HOM05D004684 ORTHO05D006904 5.5e-205 718.0 496 72.4
CDE02G2675 Ceratophyllum demersum HOM05D004684 ORTHO05D006904 2.0e-202 709.5 440 79.5
Pp3c21_8670 Physcomitrium patens HOM05D004684 ORTHO05D006904 5.0e-198 694.9 513 66.7
Mapoly0107s0036 Marchantia polymorpha HOM05D004684 ORTHO05D006904 1.1e-197 693.7 497 68.0
Nitab4.5_0022682g0010 Nicotiana tabacum HOM05D004684 ORTHO05D006904 6.8e-195 684.5 485 72.0
Psat2g106400 Pisum sativum HOM05D004684 ORTHO05D006904 5.7e-194 681.4 550 69.5
CBR_g20386 Chara braunii HOM05D004684 ORTHO05D006904 2.6e-186 656.0 484 64.5
unitig_748.g8291 Utricularia gibba HOM05D004684 ORTHO05D006904 3.4e-186 655.6 575 61.4
Peaxi162Scf00531g00034 Petunia axillaris HOM05D004684 ORTHO05D006904 2.8e-185 652.5 557 62.7
SEGI_18338 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 8.3e-185 651.0 460 70.7
SMO147G0416 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 1.2e-183 647.1 518 62.4
Actinidia20844 Actinidia chinensis HOM05D004684 ORTHO05D006904 2.8e-180 636.0 517 66.3
SMO273G0058 Selaginella moellendorffii HOM05D004684 ORTHO05D006904 4.0e-179 632.1 533 60.2
AagrBONN_evm.TU.Sc2ySwM_368.913 Anthoceros agrestis HOM05D004684 ORTHO05D006904 8.3e-177 624.4 423 72.8
MD13G1223700 Malus domestica HOM05D004684 ORTHO05D006904 4.6e-175 618.6 469 67.2
QL02p071976 Quercus lobata HOM05D004684 ORTHO05D006904 2.1e-164 583.2 455 68.6
CsaV3_2G012390 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.8e-163 580.1 343 85.7
MCO15G005 Micromonas commoda HOM05D004684 ORTHO05D006904 4.4e-154 548.9 486 57.0
PRCOL_00005018 Prasinoderma coloniale HOM05D004684 ORTHO05D006904 3.2e-152 542.7 490 57.1
Lj3A639G13 Lonicera japonica HOM05D004684 ORTHO05D006904 7.8e-151 538.1 372 75.5
RcHm_v2.0_Chr4g0395911 Rosa chinensis HOM05D004684 ORTHO05D006904 7.3e-149 531.6 322 82.0
BcaB03g14590 Brassica carinata HOM05D004684 ORTHO05D006904 5.8e-138 495.4 322 76.1
GSVIVG01027938001 Vitis vinifera HOM05D004684 ORTHO05D006904 5.1e-134 482.3 293 82.3
Pp3s32_289 Physcomitrium patens HOM05D004684 ORTHO05D006904 2.1e-132 476.9 478 48.1
Psat2g046800 Pisum sativum HOM05D004684 ORTHO05D006904 2.2e-121 440.3 259 87.6
Oeu059392.1 Olea europaea HOM05D004684 ORTHO05D006904 8.2e-116 421.8 271 79.7
Rhsim02G0163300 Rhododendron simsii HOM05D004684 ORTHO05D006904 3.8e-113 412.9 443 52.6
FAN12G2037 Fragaria x ananassa HOM05D004684 ORTHO05D006904 3.1e-107 393.3 404 56.9
MELO3C023047.2 Cucumis melo HOM05D004684 ORTHO05D006904 1.4e-99 367.9 228 81.1
Cc03_g06440 Coffea canephora HOM05D004684 ORTHO05D006904 4.5e-90 336.3 205 82.9
COL.COLO4_15980 Corchorus olitorius HOM05D004684 ORTHO05D006904 7.7e-90 335.5 210 75.2
RcHm_v2.0_Chr4g0395921 Rosa chinensis HOM05D004684 ORTHO05D006904 2.4e-83 313.9 210 72.4
Cc01_g12830 Coffea canephora HOM05D004684 ORTHO05D006904 6.5e-81 305.8 183 84.2
CsaV3_2G012380 Cucumis sativus L. HOM05D004684 ORTHO05D006904 1.6e-79 301.2 209 69.9
Lj3C639G0 Lonicera japonica HOM05D004684 ORTHO05D006904 2.7e-79 300.4 210 71.4
MCO02G423 Micromonas commoda HOM05D004684 ORTHO05D006904 4.5e-74 283.1 471 37.4
SEGI_18835 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 8.9e-62 242.3 137 78.8
Psat2g046760 Pisum sativum HOM05D004684 ORTHO05D006904 8.3e-60 235.7 139 84.9
FvH4_4g04730 Fragaria vesca HOM05D004684 ORTHO05D006904 1.2e-53 215.3 252 50.8
BcaB06g26612 Brassica carinata HOM05D004684 ORTHO05D006904 1.5e-53 214.9 241 50.2
Cfa025385 Carpinus fangiana HOM05D004684 ORTHO05D123888 1.5e-48 198.4 437 33.0
Phvul.002G091800 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.2e-45 188.7 135 74.1
Psat0s5182g0040 Pisum sativum HOM05D004684 ORTHO05D006904 7.1e-43 179.5 89 93.3
Psat3g087000 Pisum sativum HOM05D004684 ORTHO05D006904 7.1e-43 179.5 89 93.3
Cre14.g627488 Chlamydomonas reinhardtii HOM05D004684 ORTHO05D006904 2.8e-39 167.5 356 34.0
Phvul.009G129001 Phaseolus vulgaris HOM05D004684 ORTHO05D006904 1.9e-35 154.8 85 92.9
FAN12G0780 Fragaria x ananassa HOM05D004684 ORTHO05D006904 2.7e-34 151.0 146 56.2
CAN.G154.7 Capsicum annuum HOM05D004684 ORTHO05D010951 9.9e-29 132.5 123 58.5
Oeu059393.1 Olea europaea HOM05D004684 ORTHO05D029065 2.9e-28 131.0 114 63.2
SEGI_09601 Sequoiadendron giganteum HOM05D004684 ORTHO05D006904 8.7e-25 119.4 81 70.4
C07p12070 Brassica napus HOM05D004684 ORTHO05D027888 1.5e-24 118.6 153 48.4
GSVIVG01027937001 Vitis vinifera HOM05D004684 ORTHO05D029065 2.6e-21 107.8 66 81.8
BcaC01g03330 Brassica carinata HOM05D004684 ORTHO05D006904 2.9e-20 104.4 117 48.7
BraA07t28588Z Brassica rapa HOM05D004684 ORTHO05D027888 4.9e-20 103.6 141 43.3
AUR62020515 Chenopodium quinoa HOM05D000462 ORTHO05D005846 6.4e-20 103.2 64 78.1
Pp3c22_13460 Physcomitrium patens HOM05D004684 ORTHO05D314634 1.1e-19 102.4 125 44.8
DCAR_018323 Daucus carota HOM05D004684 ORTHO05D000311 2.4e-19 101.3 84 60.7
Cc03_g06450 Coffea canephora HOM05D004684 ORTHO05D029065 7.1e-19 99.8 68 75.0
Cc03_g06430 Coffea canephora HOM05D004684 ORTHO05D006904 1.2e-18 99.0 52 88.5
MD13G1223600 Malus domestica HOM05D004684 ORTHO05D029065 7.9e-18 96.3 57 82.5
A07p08010 Brassica napus HOM05D004684 ORTHO05D027888 6.7e-17 93.2 106 51.9
arahy.Tifrunner.gnm1.ann1.M032NN Arachis hypogaea HOM05D003831 ORTHO05D004440 4.5e-13 80.5 58 72.4
BcaB06g27371 Brassica carinata HOM05D004684 ORTHO05D006904 2.9e-12 77.8 61 65.6
arahy.Tifrunner.gnm1.ann1.FY8GKD Arachis hypogaea HOM05D003831 ORTHO05D004440 6.0e-10 70.1 49 71.4
CAN.G1407.1 Capsicum annuum HOM05D004684 ORTHO05D016153 6.7e-09 66.6 46 69.6
BolC7t41675H Brassica oleracea HOM05D004684 ORTHO05D027888 3.7e-07 60.8 75 44.0
arahy.Tifrunner.gnm1.ann1.PGR81E Arachis hypogaea HOM05D004684 ORTHO05D082538 6.3e-07 60.1 43 67.4
BcaC06g35681 Brassica carinata HOM05D004684 ORTHO05D008836 1.8e-06 58.5 38 71.1
arahy.Tifrunner.gnm1.ann1.G7A5RV Arachis hypogaea HOM05D004684 ORTHO05D083069 4.1e-06 57.4 38 71.1
GSVIVG01015375001 Vitis vinifera HOM05D002381 ORTHO05D002480 9.0e-06 56.2 132 34.1


User provided reference genes

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