Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G310000 Phaseolus vulgaris HOM05D004175 ORTHO05D004664 3.2e-147 525.4 331 100.0
VMungo0251G2778 Vigna mungo HOM05D004175 ORTHO05D004664 4.7e-135 485.0 332 88.0
Medtr8g102770 Medicago truncatula HOM05D004175 ORTHO05D004664 5.5e-115 418.3 318 80.5
Glyma.08G034700 Glycine max HOM05D004175 ORTHO05D004664 6.7e-113 411.4 330 78.5
Glyma.05G227700 Glycine max HOM05D004175 ORTHO05D004664 1.1e-107 394.0 330 77.0
Ca_17354_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 1.0e-105 387.5 325 76.9
Ca_29618_v3 Cicer arietinum L. HOM05D004175 ORTHO05D004664 1.0e-105 387.5 325 76.9
Lj3g0019618 Lotus japonicus HOM05D004175 ORTHO05D004664 5.7e-104 381.7 315 76.8
Haze_25808 Corylus avellana HOM05D004175 ORTHO05D004664 2.9e-100 369.4 318 77.7
Lalb_Chr05g0223141 Lupinus albus HOM05D004175 ORTHO05D004664 8.4e-100 367.9 321 73.2
Psat7g016360 Pisum sativum HOM05D004175 ORTHO05D004664 1.2e-98 364.0 334 76.3
MD02G1060900 Malus domestica HOM05D004175 ORTHO05D004664 2.7e-98 362.8 326 74.5
Hund09241 Selenicereus undatus HOM05D004175 ORTHO05D004664 3.5e-98 362.5 332 69.0
arahy.Tifrunner.gnm1.ann1.2Q2DTK Arachis hypogaea HOM05D004175 ORTHO05D004664 1.6e-95 353.6 335 71.3
CAN.G274.4 Capsicum annuum HOM05D004175 ORTHO05D004664 2.8e-95 352.8 317 71.6
Cfa003199 Carpinus fangiana HOM05D004175 ORTHO05D004664 2.8e-95 352.8 318 77.0
Prupe.7G222100 Prunus persica HOM05D004175 ORTHO05D004664 4.8e-95 352.1 318 70.4
Sopen05g014800 Solanum pennellii HOM05D004175 ORTHO05D004664 7.7e-93 344.7 319 71.5
Solyc05g018150.3 Solanum lycopersicum HOM05D004175 ORTHO05D004664 1.3e-92 344.0 319 71.2
arahy.Tifrunner.gnm1.ann1.5M1SBB Arachis hypogaea HOM05D004175 ORTHO05D004664 2.2e-92 343.2 335 70.4
Ciclev10008855m.g Citrus clementina HOM05D004175 ORTHO05D004664 2.5e-91 339.7 316 69.6
CANSAT56G2035 Cannabis sativa HOM05D004175 ORTHO05D004664 7.2e-91 338.2 327 68.2
PSO210G6864 Papaver somniferum HOM05D004175 ORTHO05D004664 4.3e-88 328.9 337 65.0
MD15G1194400 Malus domestica HOM05D004175 ORTHO05D004664 9.7e-88 327.8 325 68.9
Peaxi162Scf00001g00131 Petunia axillaris HOM05D004175 ORTHO05D004664 2.8e-87 326.2 321 67.6
TWI32G1108 Tripterygium wilfordii HOM05D004175 ORTHO05D004664 2.8e-87 326.2 318 71.7
Cc06_g10300 Coffea canephora HOM05D004175 ORTHO05D004664 8.2e-87 324.7 312 68.6
CSS0007429 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.1e-86 324.3 330 65.2
CSS0045871 Camellia sinensis var. sinensis HOM05D004175 ORTHO05D004664 1.1e-86 324.3 330 65.2
TAR383G0226 Trochodendron aralioides HOM05D004175 ORTHO05D004664 1.8e-86 323.6 317 67.5
TPR.G23501 Trifolium pratense HOM05D004175 ORTHO05D004664 2.4e-86 323.2 329 70.2
ClCG11G002240 Citrullus lanatus HOM05D004175 ORTHO05D004664 5.3e-86 322.0 360 53.6
BNapus_Darmor_BZH_scaffold_38p02220 Brassica napus HOM05D004175 ORTHO05D004664 3.4e-85 319.3 318 65.7
Thhalv10014089m.g Eutrema salsugineum HOM05D004175 ORTHO05D004664 1.7e-84 317.0 318 64.8
QL02p042164 Quercus lobata HOM05D004175 ORTHO05D004664 3.8e-84 315.8 311 66.9
Carub.0006s1803 Capsella rubella HOM05D004175 ORTHO05D004664 6.5e-84 315.1 318 65.7
BolC9t58515H Brassica oleracea HOM05D004175 ORTHO05D004664 1.1e-83 314.3 318 64.5
CiPaw.03G226400 Carya illinoinensis HOM05D004175 ORTHO05D004664 1.1e-83 314.3 318 67.6
BraA10t44078Z Brassica rapa HOM05D004175 ORTHO05D004664 2.5e-83 313.2 318 64.5
Dinv36699 Davidia involucrata HOM05D004175 ORTHO05D004664 2.5e-83 313.2 318 65.7
AT5G19680 Arabidopsis thaliana HOM05D004175 ORTHO05D004664 4.2e-83 312.4 324 64.2
A10p20040 Brassica napus HOM05D004175 ORTHO05D004664 5.5e-83 312.0 318 64.5
Aqoxy7G03896 Aquilegia oxysepala HOM05D004175 ORTHO05D004664 1.2e-82 310.8 318 63.8
BcaB05g23410 Brassica carinata HOM05D004175 ORTHO05D004664 6.1e-82 308.5 318 64.2
Atru.chr7.1440 Acer truncatum HOM05D004175 ORTHO05D004664 1.4e-81 307.4 315 64.8
AL6G31190 Arabidopsis lyrata HOM05D004175 ORTHO05D004664 3.9e-81 305.8 324 63.3
BcaC04g19365 Brassica carinata HOM05D004175 ORTHO05D004664 6.7e-81 305.1 318 63.5
C09p56500 Brassica napus HOM05D004175 ORTHO05D004664 6.7e-81 305.1 318 63.5
PSO210G7624 Papaver somniferum HOM05D004175 ORTHO05D004664 8.8e-81 304.7 333 62.8
DCAR_012049 Daucus carota HOM05D004175 ORTHO05D004664 1.5e-80 303.9 319 62.4
SHI11434 Sapria himalayana HOM05D004175 ORTHO05D004664 2.6e-80 303.1 360 57.8
Gohir.D06G065000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 4.4e-80 302.4 339 63.1
HanXRQChr10g0318361 Helianthus annuus HOM05D004175 ORTHO05D004664 4.4e-80 302.4 334 62.9
Eucgr.C03782 Eucalyptus grandis HOM05D004175 ORTHO05D004664 5.7e-80 302.0 319 64.9
FAN28G2614 Fragaria x ananassa HOM05D004175 ORTHO05D004664 7.4e-80 301.6 319 65.8
FAN26G0873 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.2e-79 300.1 318 66.0
FAN26G2762 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.2e-79 300.1 318 66.0
Potri.006G163900 Populus trichocarpa HOM05D004175 ORTHO05D004664 2.2e-79 300.1 318 68.2
CARHR193230 Cardamine hirsuta HOM05D004175 ORTHO05D004664 2.8e-79 299.7 319 62.7
SGA_v2.0_scaffold62G21556 Striga asiatica HOM05D004175 ORTHO05D004664 2.8e-79 299.7 330 63.0
Duzib187G1630 Durio zibethinus HOM05D004175 ORTHO05D004664 4.8e-79 298.9 339 61.7
FvH4_1g05880 Fragaria vesca HOM05D004175 ORTHO05D004664 4.8e-79 298.9 322 64.9
Lsat_1_v5_gn_5_143861 Lactuca sativa HOM05D004175 ORTHO05D004664 1.1e-78 297.7 321 61.7
FAN23G2598 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.4e-78 297.4 319 65.5
FAN19G1571 Fragaria x ananassa HOM05D004175 ORTHO05D004664 1.8e-78 297.0 322 63.0
AUR62010918 Chenopodium quinoa HOM05D004175 ORTHO05D004664 4.1e-78 295.8 303 65.3
Gohir.A06G066500 Gossypium hirsutum HOM05D004175 ORTHO05D004664 5.3e-78 295.4 317 65.0
Gohir.A13G195800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 5.3e-78 295.4 339 61.4
CsaV3_2G001990 Cucumis sativus L. HOM05D004175 ORTHO05D004664 9.1e-78 294.7 326 62.9
Thecc.09G102700 Theobroma cacao HOM05D004175 ORTHO05D004664 9.1e-78 294.7 337 61.7
CAN.G525.1 Capsicum annuum HOM05D004175 ORTHO05D004664 2.0e-77 293.5 317 64.0
Sp6g24700 Schrenkiella parvula HOM05D004175 ORTHO05D004664 2.0e-77 293.5 318 64.2
MELO3C004581.2 Cucumis melo HOM05D004175 ORTHO05D004664 2.6e-77 293.1 326 62.6
Oeu000358.1 Olea europaea HOM05D004175 ORTHO05D004664 1.0e-76 291.2 325 61.2
Sed0003540 Sechium edule HOM05D004175 ORTHO05D004664 1.3e-76 290.8 331 62.5
Sc08g0007900 Simmondsia chinensis HOM05D004175 ORTHO05D004664 3.8e-76 289.3 319 63.9
Manes.16G110500 Manihot esculenta HOM05D004175 ORTHO05D004664 6.5e-76 288.5 318 63.8
BcaC03g13699 Brassica carinata HOM05D004175 ORTHO05D004664 8.5e-76 288.1 318 63.5
BraA02t05525Z Brassica rapa HOM05D004175 ORTHO05D004664 8.5e-76 288.1 318 63.8
SGA_v2.0_scaffold10G05161 Striga asiatica HOM05D004175 ORTHO05D004664 8.5e-76 288.1 323 61.3
Gohir.D13G201000 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.1e-75 287.7 339 60.2
GSVIVG01015319001 Vitis vinifera HOM05D004175 ORTHO05D004664 1.1e-75 287.7 332 63.0
vmacro10860 Vaccinium macrocarpon HOM05D004175 ORTHO05D004664 2.5e-75 286.6 311 65.3
A02p05730 Brassica napus HOM05D004175 ORTHO05D004664 3.2e-75 286.2 318 63.2
Oeu017825.1 Olea europaea HOM05D004175 ORTHO05D004664 9.4e-75 284.6 321 62.0
Aa31LG1G8760 Aethionema arabicum HOM05D004175 ORTHO05D004664 2.3e-73 280.0 311 62.7
ECA234G4006 Erigeron canadensis HOM05D004175 ORTHO05D004664 3.3e-72 276.2 317 62.5
Gorai.010G076100 Gossypium raimondii HOM05D004175 ORTHO05D004664 4.4e-72 275.8 339 59.6
Nn2g11614 Nelumbo nucifera HOM05D004175 ORTHO05D004664 9.7e-72 274.6 316 61.4
Duzib168G0201 Durio zibethinus HOM05D004175 ORTHO05D004664 1.7e-71 273.9 258 60.9
THA.LOC104811087 Tarenaya hassleriana HOM05D004175 ORTHO05D004664 1.7e-71 273.9 318 61.9
Rhsim05G0041300 Rhododendron simsii HOM05D004175 ORTHO05D004664 2.8e-71 273.1 304 62.8
BcaC04g19363 Brassica carinata HOM05D004175 ORTHO05D004664 3.7e-71 272.7 292 63.4
ECA247G2452 Erigeron canadensis HOM05D004175 ORTHO05D004664 2.4e-70 270.0 292 64.0
Migut.J01107 Erythranthe guttata HOM05D004175 ORTHO05D004664 2.4e-70 270.0 318 60.4
Ah.14g083210 Amaranthus hybridus HOM05D004175 ORTHO05D004664 9.1e-70 268.1 319 61.4
MSTRG.6019 Avicennia marina HOM05D004175 ORTHO05D004664 1.2e-69 267.7 319 59.2
BcaC01g02078 Brassica carinata HOM05D004175 ORTHO05D004664 2.0e-69 266.9 217 64.1
Lalb_Chr09g0331471 Lupinus albus HOM05D004175 ORTHO05D004664 5.9e-69 265.4 314 60.8
Actinidia09442 Actinidia chinensis HOM05D001936 ORTHO05D002296 1.0e-68 264.6 328 59.5
Cpa.g.sc40.51 Carica papaya HOM05D004175 ORTHO05D004664 1.0e-68 264.6 291 64.9
ATR0705G211 Amborella trichopoda HOM05D004175 ORTHO05D004664 2.9e-68 263.1 314 60.5
BcaC04g19364 Brassica carinata HOM05D004175 ORTHO05D004664 3.2e-67 259.6 237 58.6
Zm00001eb204970 Zea mays HOM05D004175 ORTHO05D004664 5.5e-67 258.8 310 61.0
Sabra18G0074500 Salix brachista HOM05D004175 ORTHO05D004664 2.1e-66 256.9 292 65.1
Hund26252 Selenicereus undatus HOM05D004175 ORTHO05D004664 6.1e-66 255.4 318 58.5
Potri.018G086200 Populus trichocarpa HOM05D004175 ORTHO05D004664 8.0e-66 255.0 293 64.2
BolC2t08664H Brassica oleracea HOM05D004175 ORTHO05D004664 1.8e-65 253.8 231 62.3
Nn8g39121 Nelumbo nucifera HOM05D004175 ORTHO05D004664 8.8e-65 251.5 292 62.3
CDE02G1631 Ceratophyllum demersum HOM05D004175 ORTHO05D004664 1.2e-64 251.1 320 59.7
RcHm_v2.0_Chr2g0091621 Rosa chinensis HOM05D004175 ORTHO05D004664 1.2e-64 251.1 294 63.6
Gorai.013G229800 Gossypium raimondii HOM05D004175 ORTHO05D004664 2.2e-63 246.9 312 59.0
RcHm_v2.0_Chr2g0091541 Rosa chinensis HOM05D004175 ORTHO05D004664 6.3e-63 245.4 304 57.9
MBI04_g40471_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 3.8e-60 236.1 293 61.8
Os02g0230100 Oryza sativa ssp. japonica HOM05D004175 ORTHO05D004664 2.5e-59 233.4 330 54.2
C04p04320 Brassica napus HOM05D004175 ORTHO05D004664 4.0e-57 226.1 186 65.6
unitig_26.g8970 Utricularia gibba HOM05D004175 ORTHO05D004664 4.4e-56 222.6 319 52.7
Gorai.001G184800 Gossypium raimondii HOM05D004175 ORTHO05D004664 1.4e-54 217.6 158 72.8
EL10Ac8g18403 Beta vulgaris HOM05D004175 ORTHO05D004664 1.8e-54 217.2 301 57.8
C05p31230 Brassica napus HOM05D004175 ORTHO05D004664 1.6e-53 214.2 192 59.4
C03p72980 Brassica napus HOM05D004175 ORTHO05D004664 2.0e-53 213.8 192 59.4
Pp3c1_38690 Physcomitrium patens HOM05D004175 ORTHO05D004664 5.9e-53 212.2 308 49.7
C02p31840 Brassica napus HOM05D004175 ORTHO05D004664 2.3e-52 210.3 233 54.9
BcaC01g02978 Brassica carinata HOM05D004175 ORTHO05D004664 6.6e-52 208.8 171 64.9
BcaC03g15042 Brassica carinata HOM05D004175 ORTHO05D004664 1.5e-51 207.6 185 62.2
SEGI_33191 Sequoiadendron giganteum HOM05D004175 ORTHO05D004664 3.3e-51 206.5 310 52.3
BolC3t19136H Brassica oleracea HOM05D004175 ORTHO05D004664 5.6e-51 205.7 152 69.1
COL.COLO4_34774 Corchorus olitorius HOM05D004175 ORTHO05D004664 8.0e-50 201.8 156 67.3
C01p01530 Brassica napus HOM05D004175 ORTHO05D004664 3.0e-49 199.9 161 64.6
C07p36980 Brassica napus HOM05D004175 ORTHO05D004664 4.0e-49 199.5 221 53.4
C09p49510 Brassica napus HOM05D004175 ORTHO05D004664 1.5e-48 197.6 190 61.1
AagrBONN_evm.TU.Sc2ySwM_117.1201 Anthoceros agrestis HOM05D004175 ORTHO05D004664 1.7e-47 194.1 315 50.8
Pp3c2_9120 Physcomitrium patens HOM05D004175 ORTHO05D004664 2.2e-47 193.7 308 48.1
BcaC06g33783 Brassica carinata HOM05D004175 ORTHO05D004664 6.4e-47 192.2 186 58.6
A07p01400 Brassica napus HOM05D004175 ORTHO05D004664 8.3e-47 191.8 159 66.0
C03p57560 Brassica napus HOM05D004175 ORTHO05D004664 1.4e-46 191.0 192 58.3
BraA03t14262Z Brassica rapa HOM05D004175 ORTHO05D004664 2.8e-42 176.8 153 65.4
Glyma.08G276800 Glycine max HOM05D004175 ORTHO05D004664 3.6e-42 176.4 166 62.7
Lj7A662T62 Lonicera japonica HOM05D004175 ORTHO05D004664 3.6e-42 176.4 212 67.5
Mapoly0051s0012 Marchantia polymorpha HOM05D004175 ORTHO05D004664 6.2e-42 175.6 319 46.4
BolC3t18031H Brassica oleracea HOM05D004175 ORTHO05D004664 8.9e-41 171.8 168 57.7
Gorai.009G408400 Gossypium raimondii HOM05D004175 ORTHO05D004664 3.2e-38 163.3 231 61.9
SMO337G0008 Selaginella moellendorffii HOM05D004175 ORTHO05D004664 4.6e-37 159.5 308 46.8
Gohir.D04G104800 Gossypium hirsutum HOM05D004175 ORTHO05D004664 1.0e-36 158.3 183 71.6
Nitab4.5_0000012g0030 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.3e-36 157.9 157 55.4
Nitab4.5_0003199g0020 Nicotiana tabacum HOM05D004175 ORTHO05D004664 1.4e-33 147.9 120 64.2
CBR_g36965 Chara braunii HOM05D004175 ORTHO05D004664 3.1e-33 146.7 316 42.7
MBI04_g06580_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 1.3e-31 141.4 126 61.1
BolC7t44210H Brassica oleracea HOM05D004175 ORTHO05D004664 1.9e-30 137.5 130 56.9
MD03G1179500 Malus domestica HOM05D004175 ORTHO05D004664 1.9e-27 127.5 169 48.5
BolC4t22068H Brassica oleracea HOM05D004175 ORTHO05D004664 2.3e-20 104.0 82 63.4
COL.COLO4_34775 Corchorus olitorius HOM05D004175 ORTHO05D004664 5.8e-16 89.4 96 54.2
Cre05.g234655 Chlamydomonas reinhardtii HOM05D004175 ORTHO05D004664 1.3e-15 88.2 147 37.4
BolC9t58072H Brassica oleracea HOM05D004175 ORTHO05D004664 1.1e-14 85.1 96 51.0
FAN10G3778 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.4e-14 84.0 87 54.0
FAN10G1780 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.1e-13 80.9 96 49.0
FAN10G3383 Fragaria x ananassa HOM05D004175 ORTHO05D004664 2.1e-13 80.9 96 49.0
C09p52070 Brassica napus HOM05D004175 ORTHO05D004664 1.0e-12 78.6 102 48.0
C03p68800 Brassica napus HOM05D004175 ORTHO05D004664 1.3e-12 78.2 58 62.1
MBI04_g44954_MAGBIO Magnolia biondii HOM05D004175 ORTHO05D004664 3.0e-12 77.0 162 37.7
FAN10G2625 Fragaria x ananassa HOM05D004175 ORTHO05D004664 4.3e-11 73.2 80 51.2
FAN28G1141 Fragaria x ananassa HOM05D004175 ORTHO05D004664 6.2e-10 69.3 103 44.7
FvH4_5g23601 Fragaria vesca HOM05D004175 ORTHO05D045656 1.2e-08 65.1 67 53.7
FAN18G1628 Fragaria x ananassa HOM05D005966 ORTHO05D007584 4.5e-08 63.2 67 52.2
FvH4_3g18060 Fragaria vesca HOM05D004175 ORTHO05D004664 4.9e-07 59.7 47 59.6
C05p31220 Brassica napus HOM05D000252 ORTHO05D004664 1.4e-06 58.2 31 83.9


User provided reference genes

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