Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G305500 Phaseolus vulgaris HOM05D004235 ORTHO05D005157 0.0e+00 1650.2 828 100.0
VMungo0251G2139 Vigna mungo HOM05D004235 ORTHO05D005157 0.0e+00 1577.8 823 96.1
Glyma.05G223700 Glycine max HOM05D004235 ORTHO05D005157 0.0e+00 1572.4 823 94.8
Psat7g019200 Pisum sativum HOM05D004235 ORTHO05D005157 0.0e+00 1486.1 826 88.7
TPR.G25478 Trifolium pratense HOM05D004235 ORTHO05D005157 0.0e+00 1481.1 817 89.0
Glyma.08G030800 Glycine max HOM05D004235 ORTHO05D005157 0.0e+00 1475.7 823 90.2
Lj4g0008017 Lotus japonicus HOM05D004235 ORTHO05D005157 0.0e+00 1470.3 827 87.7
Medtr8g101950 Medicago truncatula HOM05D004235 ORTHO05D005157 0.0e+00 1374.0 826 83.5
Ca_17388_v3 Cicer arietinum L. HOM05D004235 ORTHO05D005157 0.0e+00 1362.4 820 83.2
QL02p063521 Quercus lobata HOM05D004235 ORTHO05D005157 0.0e+00 1353.6 811 81.4
MD15G1202300 Malus domestica HOM05D004235 ORTHO05D005157 0.0e+00 1346.6 810 81.4
Prupe.7G214900 Prunus persica HOM05D004235 ORTHO05D005157 0.0e+00 1340.9 810 81.2
Duzib168G2142 Durio zibethinus HOM05D004235 ORTHO05D005157 0.0e+00 1338.9 812 80.5
arahy.Tifrunner.gnm1.ann1.00M5T5 Arachis hypogaea HOM05D004235 ORTHO05D005157 0.0e+00 1337.4 820 81.5
Dinv36730 Davidia involucrata HOM05D004235 ORTHO05D005157 0.0e+00 1336.6 811 81.8
Thecc.09G094700 Theobroma cacao HOM05D004235 ORTHO05D005157 0.0e+00 1336.2 812 79.8
arahy.Tifrunner.gnm1.ann1.VZDV7L Arachis hypogaea HOM05D004235 ORTHO05D005157 0.0e+00 1335.9 820 81.2
Haze_25867 Corylus avellana HOM05D004235 ORTHO05D005157 0.0e+00 1334.3 811 80.3
Lj7C671G7 Lonicera japonica HOM05D004235 ORTHO05D005157 0.0e+00 1333.2 816 80.3
Cfa003136 Carpinus fangiana HOM05D004235 ORTHO05D005157 0.0e+00 1332.0 812 80.3
FAN28G2658 Fragaria x ananassa HOM05D004235 ORTHO05D005157 0.0e+00 1331.2 811 80.3
CANSAT56G3324 Cannabis sativa HOM05D004235 ORTHO05D005157 0.0e+00 1330.9 807 79.6
GSVIVG01015250001 Vitis vinifera HOM05D004235 ORTHO05D005157 0.0e+00 1330.5 810 81.4
FvH4_1g06790 Fragaria vesca HOM05D004235 ORTHO05D005157 0.0e+00 1325.1 811 80.1
RcHm_v2.0_Chr2g0092561 Rosa chinensis HOM05D004235 ORTHO05D005157 0.0e+00 1325.1 811 79.9
FAN19G3193 Fragaria x ananassa HOM05D004235 ORTHO05D005157 0.0e+00 1324.7 811 80.0
CiPaw.03G220000 Carya illinoinensis HOM05D004235 ORTHO05D005157 0.0e+00 1322.4 811 80.4
Rhsim03G0234900 Rhododendron simsii HOM05D004235 ORTHO05D005157 0.0e+00 1322.0 811 79.2
CSS0042623 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 0.0e+00 1315.1 812 79.4
FAN23G1406 Fragaria x ananassa HOM05D004235 ORTHO05D005157 0.0e+00 1313.9 811 79.3
FAN26G0912 Fragaria x ananassa HOM05D004235 ORTHO05D005157 0.0e+00 1313.1 819 78.9
FAN26G2547 Fragaria x ananassa HOM05D004235 ORTHO05D005157 0.0e+00 1312.4 819 79.0
Hma1.2p1_1074F.1_g254400 Hydrangea macrophylla HOM05D004235 ORTHO05D005157 0.0e+00 1310.8 811 78.9
PGSC0003DMG402000346 Solanum tuberosum HOM05D004235 ORTHO05D005157 0.0e+00 1307.4 811 78.5
Nitab4.5_0000540g0150 Nicotiana tabacum HOM05D004235 ORTHO05D005157 0.0e+00 1306.2 811 78.5
Nitab4.5_0003781g0020 Nicotiana tabacum HOM05D004235 ORTHO05D005157 0.0e+00 1305.8 811 78.2
Gohir.A05G028200 Gossypium hirsutum HOM05D004235 ORTHO05D005157 0.0e+00 1303.9 812 78.1
Gorai.009G030000 Gossypium raimondii HOM05D004235 ORTHO05D005157 0.0e+00 1302.3 812 78.0
Sopen12g003640 Solanum pennellii HOM05D004235 ORTHO05D005157 0.0e+00 1302.3 811 77.9
Solyc12g008710.2 Solanum lycopersicum HOM05D004235 ORTHO05D005157 0.0e+00 1300.8 811 77.8
Gohir.D05G029800 Gossypium hirsutum HOM05D004235 ORTHO05D005157 0.0e+00 1298.5 812 77.7
Manes.16G105300 Manihot esculenta HOM05D004235 ORTHO05D005157 0.0e+00 1297.0 814 77.6
CAN.G1241.9 Capsicum annuum HOM05D004235 ORTHO05D005157 0.0e+00 1296.6 814 77.8
Cc06_g10940 Coffea canephora HOM05D004235 ORTHO05D005157 0.0e+00 1293.9 814 78.5
Atru.chr7.1524 Acer truncatum HOM05D004235 ORTHO05D005157 0.0e+00 1289.6 820 77.7
ClCG11G001880 Citrullus lanatus HOM05D004235 ORTHO05D005157 0.0e+00 1281.9 814 77.6
TWI34G1426 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 0.0e+00 1278.8 810 77.5
COL.COLO4_18249 Corchorus olitorius HOM05D004235 ORTHO05D005157 0.0e+00 1278.5 812 77.6
CsaV3_2G001610 Cucumis sativus L. HOM05D004235 ORTHO05D005157 0.0e+00 1277.3 812 77.1
Sed0001781 Sechium edule HOM05D004235 ORTHO05D005157 0.0e+00 1276.5 814 77.3
Nn8g38947 Nelumbo nucifera HOM05D004235 ORTHO05D005157 0.0e+00 1276.2 813 76.6
CSS0043888 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 0.0e+00 1273.5 812 77.6
Eucgr.C03689 Eucalyptus grandis HOM05D004235 ORTHO05D005157 0.0e+00 1271.9 813 76.5
Peaxi162Scf00498g00032 Petunia axillaris HOM05D004235 ORTHO05D005157 0.0e+00 1268.8 790 78.6
PGR102G2758 Punica granatum HOM05D004235 ORTHO05D005157 0.0e+00 1266.5 811 76.1
TAR383G0914 Trochodendron aralioides HOM05D004235 ORTHO05D005157 0.0e+00 1263.1 811 76.7
MELO3C004614.2 Cucumis melo HOM05D004235 ORTHO05D005157 0.0e+00 1252.3 791 77.9
HanXRQChr04g0112481 Helianthus annuus HOM05D004235 ORTHO05D005157 0.0e+00 1251.5 814 74.3
THA.LOC104817747 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 0.0e+00 1251.1 811 74.0
THA.LOC104811734 Tarenaya hassleriana HOM05D004235 ORTHO05D005157 0.0e+00 1247.6 810 73.6
PSO832G0536 Papaver somniferum HOM05D004235 ORTHO05D005157 0.0e+00 1245.0 814 74.7
Ciclev10010146m.g Citrus clementina HOM05D004235 ORTHO05D005157 0.0e+00 1244.6 810 75.4
Migut.J00436 Erythranthe guttata HOM05D004235 ORTHO05D005157 0.0e+00 1240.3 810 74.9
AL8G32560 Arabidopsis lyrata HOM05D004235 ORTHO05D005157 0.0e+00 1239.6 811 73.7
CARHR270480 Cardamine hirsuta HOM05D004235 ORTHO05D005157 0.0e+00 1239.2 810 73.5
BcaC04g20058 Brassica carinata HOM05D004235 ORTHO05D005157 0.0e+00 1238.8 811 73.9
PSO063G2511 Papaver somniferum HOM05D004235 ORTHO05D005157 0.0e+00 1238.8 814 74.4
Aqoxy7G01320 Aquilegia oxysepala HOM05D004235 ORTHO05D005157 0.0e+00 1238.4 814 74.0
ECA236G4919 Erigeron canadensis HOM05D004235 ORTHO05D005157 0.0e+00 1238.4 813 74.2
BcaB08g36065 Brassica carinata HOM05D004235 ORTHO05D005157 0.0e+00 1237.6 811 73.6
Carub.0008s1721 Capsella rubella HOM05D004235 ORTHO05D005157 0.0e+00 1237.2 811 73.5
BraA10t43498Z Brassica rapa HOM05D004235 ORTHO05D005157 0.0e+00 1234.6 812 73.6
BolC9t57680H Brassica oleracea HOM05D004235 ORTHO05D005157 0.0e+00 1234.2 812 73.8
Sp6g18480 Schrenkiella parvula HOM05D004235 ORTHO05D005157 0.0e+00 1234.2 811 73.7
AT5G56730 Arabidopsis thaliana HOM05D004235 ORTHO05D005157 0.0e+00 1233.4 811 73.0
SGA_v2.0_scaffold62G21574 Striga asiatica HOM05D004235 ORTHO05D005157 0.0e+00 1233.0 835 72.9
C09p48300 Brassica napus HOM05D004235 ORTHO05D005157 0.0e+00 1232.6 812 73.8
A10p14070 Brassica napus HOM05D004235 ORTHO05D005157 0.0e+00 1231.1 812 73.5
Aa31LG3G12550 Aethionema arabicum HOM05D004235 ORTHO05D005157 0.0e+00 1229.5 811 73.5
Sc04g0004610 Simmondsia chinensis HOM05D004235 ORTHO05D005157 0.0e+00 1223.8 810 74.4
ATR0789G124 Amborella trichopoda HOM05D004235 ORTHO05D005157 0.0e+00 1211.4 792 74.6
Oeu052124.2 Olea europaea HOM05D004235 ORTHO05D005157 0.0e+00 1201.4 826 72.8
vmacro06271 Vaccinium macrocarpon HOM05D004235 ORTHO05D005157 0.0e+00 1199.5 975 64.4
AUR62027475 Chenopodium quinoa HOM05D004235 ORTHO05D005157 0.0e+00 1199.1 811 72.4
unitig_26.g9162 Utricularia gibba HOM05D004235 ORTHO05D005157 0.0e+00 1194.9 814 71.6
HPP92_009154 Vanilla planifolia HOM05D004235 ORTHO05D005157 0.0e+00 1191.4 812 71.8
EL10Ac8g19244 Beta vulgaris HOM05D004235 ORTHO05D005157 0.0e+00 1191.0 838 70.4
TWI63G1589 Tripterygium wilfordii HOM05D004235 ORTHO05D005157 0.0e+00 1188.7 810 73.8
DCAR_028630 Daucus carota HOM05D004235 ORTHO05D005157 0.0e+00 1182.2 812 71.7
Hund06688 Selenicereus undatus HOM05D004235 ORTHO05D005157 0.0e+00 1164.8 814 70.5
Lsat_1_v5_gn_8_88100 Lactuca sativa HOM05D004235 ORTHO05D005157 0.0e+00 1157.9 813 70.5
AUR62034005 Chenopodium quinoa HOM05D004235 ORTHO05D005157 0.0e+00 1156.7 770 73.5
Duzib168G1665 Durio zibethinus HOM05D004235 ORTHO05D005157 0.0e+00 1149.8 812 70.2
Thecc.09G094500 Theobroma cacao HOM05D004235 ORTHO05D005157 0.0e+00 1138.6 779 71.9
Thhalv10012682m.g Eutrema salsugineum HOM05D004235 ORTHO05D005157 0.0e+00 1137.5 813 69.2
Thecc.09G094600 Theobroma cacao HOM05D004235 ORTHO05D005157 0.0e+00 1136.7 808 70.7
Zm00001eb162240 Zea mays HOM05D004235 ORTHO05D005157 0.0e+00 1136.7 780 71.5
Gohir.D08G265400 Gossypium hirsutum HOM05D004235 ORTHO05D005157 0.0e+00 1132.1 810 68.9
Gorai.004G283400 Gossypium raimondii HOM05D004235 ORTHO05D005157 0.0e+00 1130.2 810 68.8
Gohir.A08G244500 Gossypium hirsutum HOM05D004235 ORTHO05D005157 0.0e+00 1128.6 807 69.1
Duzib150G0514 Durio zibethinus HOM05D004235 ORTHO05D005157 0.0e+00 1116.3 804 69.5
Mapoly0007s0115 Marchantia polymorpha HOM05D004235 ORTHO05D005157 1.3e-298 1029.6 816 60.9
SMO268G0025 Selaginella moellendorffii HOM05D004235 ORTHO05D005157 5.6e-294 1014.2 810 60.0
Migut.J00437 Erythranthe guttata HOM05D004235 ORTHO05D005157 4.6e-288 994.6 791 63.7
COL.COLO4_18247 Corchorus olitorius HOM05D004235 ORTHO05D005157 1.3e-287 993.0 824 60.4
Pp3c19_10200 Physcomitrium patens HOM05D004235 ORTHO05D005157 9.6e-286 986.9 811 59.6
CSS0008185 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.3e-282 976.5 713 70.7
Sc18g0001680 Simmondsia chinensis HOM05D004235 ORTHO05D005157 4.2e-273 944.9 792 59.1
COL.COLO4_18244 Corchorus olitorius HOM05D004235 ORTHO05D005157 4.6e-272 941.4 812 58.3
Ah.09g230260 Amaranthus hybridus HOM05D004235 ORTHO05D005157 3.3e-262 908.7 792 56.6
Hund09051 Selenicereus undatus HOM05D004235 ORTHO05D005157 4.3e-262 908.3 799 57.7
EL10Ac8g18336 Beta vulgaris HOM05D004235 ORTHO05D005157 1.2e-259 900.2 795 57.1
Sc18g0001660 Simmondsia chinensis HOM05D004235 ORTHO05D005157 4.2e-257 891.7 775 57.4
AUR62021351 Chenopodium quinoa HOM05D004235 ORTHO05D005157 8.8e-255 884.0 794 56.7
CBR_g39508 Chara braunii HOM05D004235 ORTHO05D005157 4.2e-249 865.1 836 52.2
COL.COLO4_18248 Corchorus olitorius HOM05D004235 ORTHO05D005157 2.1e-240 836.3 691 61.9
AUR62033265 Chenopodium quinoa HOM05D004235 ORTHO05D005157 6.5e-234 814.7 699 58.9
COL.COLO4_18245 Corchorus olitorius HOM05D004235 ORTHO05D005157 4.0e-223 778.9 779 52.4
Cpa.g.sc78.62 Carica papaya HOM05D004235 ORTHO05D005157 1.9e-193 680.2 421 78.6
Cpa.g.sc2319.2 Carica papaya HOM05D004235 ORTHO05D005157 7.6e-190 668.3 404 80.7
CSS0028903 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 4.9e-173 612.5 408 76.2
Lalb_Chr09g0331731 Lupinus albus HOM05D004235 ORTHO05D005157 4.2e-172 609.4 364 81.9
Lalb_Chr09g0331751 Lupinus albus HOM05D004235 ORTHO05D005157 1.3e-154 551.2 358 79.9
MCO05G244 Micromonas commoda HOM05D004235 ORTHO05D005157 4.4e-137 493.0 838 34.8
Os01g0558850 Oryza sativa ssp. japonica HOM05D004235 ORTHO05D005157 5.3e-127 459.5 320 71.6
SEGI_18611 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 2.2e-104 384.4 314 56.4
SalBow6G3097 Salvia bowleyana HOM05D004235 ORTHO05D005157 9.8e-97 359.0 226 80.1
Pp3c22_21190 Physcomitrium patens HOM05D004235 ORTHO05D005157 9.2e-95 352.4 447 44.1
SEGI_16235 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 5.0e-93 346.7 232 69.0
RcHm_v2.0_Chr2g0091881 Rosa chinensis HOM05D004235 ORTHO05D005157 5.4e-87 326.6 265 64.9
SEGI_08113 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 6.6e-85 319.7 226 69.9
Aa31LG3G12670 Aethionema arabicum HOM05D004235 ORTHO05D005157 3.6e-83 313.9 205 75.6
Aa31LG3G12660 Aethionema arabicum HOM05D004235 ORTHO05D005157 3.9e-77 293.9 231 65.4
CSS0031019 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 2.3e-69 268.1 159 78.0
SGA_v2.0_scaffold354G49755 Striga asiatica HOM05D004235 ORTHO05D005157 1.4e-58 232.3 175 61.7
SGA_v2.0_scaffold21G09333 Striga asiatica HOM05D004235 ORTHO05D005157 4.6e-54 217.2 185 58.4
Aa31LG3G12570 Aethionema arabicum HOM05D004235 ORTHO05D005157 3.0e-45 188.0 203 50.2
PGSC0003DMG400037643 Solanum tuberosum HOM05D004235 ORTHO05D005157 2.4e-42 178.3 492 29.1
SEGI_40851 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 9.0e-42 176.4 133 61.7
C02p28510 Brassica napus HOM05D004235 ORTHO05D005157 2.7e-38 164.9 108 69.4
BolC2t08892H Brassica oleracea HOM05D004235 ORTHO05D005157 2.7e-38 164.9 108 69.4
MBI12_g34172_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 4.3e-36 157.5 126 65.1
SEGI_09422 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 1.2e-33 149.4 130 59.2
BcaC03g15257 Brassica carinata HOM05D004235 ORTHO05D005157 4.2e-31 141.0 80 77.5
MBI12_g07780_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 1.1e-28 132.9 92 67.4
HanXRQChr07g0193421 Helianthus annuus HOM05D004235 ORTHO05D005157 2.8e-27 128.3 96 67.7
Cre16.g647500 Chlamydomonas reinhardtii HOM05D004235 ORTHO05D005157 6.9e-26 123.6 171 36.3
Aa31LG3G12610 Aethionema arabicum HOM05D004235 ORTHO05D005157 2.1e-22 112.1 68 72.1
Lalb_Chr09g0331741 Lupinus albus HOM05D004235 ORTHO05D005157 1.1e-20 106.3 55 89.1
Oeu052121.2 Olea europaea HOM05D000101 ORTHO05D000089 1.1e-18 99.8 93 53.8
MBI14_g38886_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 9.4e-15 86.7 46 84.8
SEGI_38347 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 4.7e-14 84.3 65 60.0
MBI14_g45694_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 1.1e-12 79.7 46 82.6
MBI14_g11330_MAGBIO Magnolia biondii HOM05D004235 ORTHO05D005157 4.4e-12 77.8 46 78.3
RcHm_v2.0_Chr6g0274801 Rosa chinensis HOM05D004235 ORTHO05D026109 1.3e-11 76.3 51 70.6
Glyma.14G085000 Glycine max HOM05D004702 ORTHO05D005505 4.5e-09 67.8 89 49.4
SEGI_21772 Sequoiadendron giganteum HOM05D004235 ORTHO05D005157 1.0e-08 66.6 86 47.7
PGSC0003DMG400043958 Solanum tuberosum HOM05D004235 ORTHO05D005157 1.7e-08 65.9 157 29.9
Oeu011926.1 Olea europaea HOM05D004235 ORTHO05D005157 5.0e-08 64.3 53 62.3
CSS0038548 Camellia sinensis var. sinensis HOM05D004235 ORTHO05D005157 1.5e-07 62.8 33 84.8
Gohir.A01G101300 Gossypium hirsutum HOM05D003632 ORTHO05D005497 1.6e-06 59.3 436 20.2
Phvul.002G040800 Phaseolus vulgaris HOM05D003632 ORTHO05D005497 2.1e-06 58.9 433 21.0
THA.LOC104813211 Tarenaya hassleriana HOM05D003632 ORTHO05D005497 4.7e-06 57.8 337 21.4
TWI38G0156 Tripterygium wilfordii HOM05D003632 ORTHO05D005497 8.0e-06 57.0 354 20.1


User provided reference genes

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