Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G303100 Phaseolus vulgaris HOM05D004803 ORTHO05D005653 2.2e-32 141.7 73 100.0
Glyma.05G221400 Glycine max HOM05D004803 ORTHO05D005653 1.1e-28 129.4 73 90.4
Glyma.08G027900 Glycine max HOM05D004803 ORTHO05D005653 1.5e-28 129.0 73 89.0
Lalb_Chr16g0390871 Lupinus albus HOM05D004803 ORTHO05D005653 5.5e-28 127.1 73 86.3
Ca_17414_v3 Cicer arietinum L. HOM05D004803 ORTHO05D005653 1.2e-25 119.4 73 79.5
CSS0040541 Camellia sinensis var. sinensis HOM05D004803 ORTHO05D005653 4.4e-25 117.5 73 75.3
TPR.G25472 Trifolium pratense HOM05D004803 ORTHO05D005653 4.4e-25 117.5 73 78.1
RcHm_v2.0_Chr4g0397981 Rosa chinensis HOM05D004803 ORTHO05D005653 7.5e-25 116.7 74 74.3
Lsat_1_v5_gn_7_59621 Lactuca sativa HOM05D004803 ORTHO05D005653 2.2e-24 115.2 73 76.7
Lsat_1_v5_gn_7_59641 Lactuca sativa HOM05D004803 ORTHO05D005653 2.2e-24 115.2 73 76.7
FvH4_4g06260 Fragaria vesca HOM05D004803 ORTHO05D005653 2.8e-24 114.8 74 74.3
FAN12G1038 Fragaria x ananassa HOM05D004803 ORTHO05D005653 2.8e-24 114.8 74 74.3
Psat7g021680 Pisum sativum HOM05D004803 ORTHO05D005653 3.7e-24 114.4 73 74.0
TAR636G2654 Trochodendron aralioides HOM05D004803 ORTHO05D005653 3.7e-24 114.4 73 75.3
MD13G1234800 Malus domestica HOM05D004803 ORTHO05D005653 4.9e-24 114.0 74 77.0
vmacro20779 Vaccinium macrocarpon HOM05D004803 ORTHO05D005653 6.3e-24 113.6 75 80.0
FAN22G0315 Fragaria x ananassa HOM05D004803 ORTHO05D005653 8.3e-24 113.2 74 73.0
Thecc.07G084900 Theobroma cacao HOM05D004803 ORTHO05D005653 8.3e-24 113.2 73 71.2
FAN17G0329 Fragaria x ananassa HOM05D004803 ORTHO05D005653 1.4e-23 112.5 74 73.0
Duzib106G0817 Durio zibethinus HOM05D004803 ORTHO05D005653 1.8e-23 112.1 73 72.6
Gohir.A13G115000 Gossypium hirsutum HOM05D004803 ORTHO05D005653 1.8e-23 112.1 73 72.6
Atru.chr7.977 Acer truncatum HOM05D004803 ORTHO05D005653 2.4e-23 111.7 73 72.6
Cfa020735 Carpinus fangiana HOM05D004803 ORTHO05D005653 4.1e-23 110.9 75 76.0
ClCG06G014040 Citrullus lanatus HOM05D004803 ORTHO05D005653 5.4e-23 110.5 74 73.0
FAN07G1450 Fragaria x ananassa HOM05D004803 ORTHO05D005653 5.4e-23 110.5 74 70.3
Gohir.D13G117900 Gossypium hirsutum HOM05D004803 ORTHO05D005653 5.4e-23 110.5 73 71.2
Gorai.013G132400 Gossypium raimondii HOM05D004803 ORTHO05D005653 5.4e-23 110.5 73 71.2
Hma1.2p1_0284F.1_g113820 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 5.4e-23 110.5 73 72.6
Manes.13G122700 Manihot esculenta HOM05D004803 ORTHO05D005653 7.0e-23 110.2 75 73.3
MD16G1239600 Malus domestica HOM05D004803 ORTHO05D005653 9.1e-23 109.8 74 74.3
Medtr2g067370 Medicago truncatula HOM05D004803 ORTHO05D005653 9.1e-23 109.8 73 76.7
Prupe.1G065700 Prunus persica HOM05D004803 ORTHO05D005653 9.1e-23 109.8 74 68.9
CiPaw.15G155100 Carya illinoinensis HOM05D004803 ORTHO05D005653 1.6e-22 109.0 75 74.7
COL.COLO4_24021 Corchorus olitorius HOM05D004803 ORTHO05D005653 2.7e-22 108.2 73 71.2
MBI13_g31565_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 3.5e-22 107.8 74 74.3
Medtr3g462060 Medicago truncatula HOM05D004803 ORTHO05D005653 3.5e-22 107.8 73 78.1
Ciclev10023194m.g Citrus clementina HOM05D004803 ORTHO05D005653 4.5e-22 107.5 73 67.1
Manes.12G104200 Manihot esculenta HOM05D004803 ORTHO05D005653 4.5e-22 107.5 75 70.7
Sed0007901 Sechium edule HOM05D004803 ORTHO05D005653 5.9e-22 107.1 74 70.3
Cpa.g.sc116.72 Carica papaya HOM05D004803 ORTHO05D005653 1.0e-21 106.3 73 68.5
HanXRQChr14g0437441 Helianthus annuus HOM05D004803 ORTHO05D005653 2.9e-21 104.8 74 68.9
Medtr3g055500 Medicago truncatula HOM05D004803 ORTHO05D005653 2.9e-21 104.8 71 76.1
QL11p009265 Quercus lobata HOM05D004803 ORTHO05D005653 3.8e-21 104.4 76 69.7
Ciclev10003057m.g Citrus clementina HOM05D004803 ORTHO05D005653 5.0e-21 104.0 73 74.0
Potri.018G146602 Populus trichocarpa HOM05D004803 ORTHO05D005653 5.0e-21 104.0 73 68.5
Potri.006G077500 Populus trichocarpa HOM05D004803 ORTHO05D005653 8.6e-21 103.2 73 67.1
CANSAT80G0011 Cannabis sativa HOM05D004803 ORTHO05D005653 1.1e-20 102.8 71 67.6
Lsat_1_v5_gn_7_59661 Lactuca sativa HOM05D004803 ORTHO05D005653 1.9e-20 102.1 73 68.5
Potri.018G145502 Populus trichocarpa HOM05D004803 ORTHO05D005653 5.5e-20 100.5 73 65.8
HPP92_006365 Vanilla planifolia HOM05D004803 ORTHO05D005653 5.5e-20 100.5 73 64.4
MELO3C019213.2 Cucumis melo HOM05D004803 ORTHO05D005653 1.2e-19 99.4 74 67.6
MD15G1094200 Malus domestica HOM05D004803 ORTHO05D005653 1.6e-19 99.0 74 67.6
CsaV3_2G035410 Cucumis sativus L. HOM05D004803 ORTHO05D005653 2.1e-19 98.6 73 65.8
Duzib128G1472 Durio zibethinus HOM05D004803 ORTHO05D005653 3.6e-19 97.8 73 63.0
Migut.B00847 Erythranthe guttata HOM05D004803 ORTHO05D005653 4.7e-19 97.4 79 69.6
AT5G41685 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 1.0e-18 96.3 76 63.2
Nn8g40644 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.8e-18 95.5 71 67.6
Nitab4.5_0000413g0050 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.8e-18 95.5 78 64.1
Nitab4.5_0005014g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 1.8e-18 95.5 78 64.1
Solyc05g047390.1 Solanum lycopersicum HOM05D004803 ORTHO05D005653 1.8e-18 95.5 79 63.3
Sopen05g027700 Solanum pennellii HOM05D004803 ORTHO05D005653 1.8e-18 95.5 79 63.3
Nitab4.5_0005411g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 2.3e-18 95.1 78 61.5
TWI14G1226 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 2.3e-18 95.1 75 68.0
Hma1.2p1_0418F.1_g149310 Hydrangea macrophylla HOM05D004803 ORTHO05D005653 3.0e-18 94.7 71 66.2
BcaC08g44541 Brassica carinata HOM05D004803 ORTHO05D005653 4.0e-18 94.4 75 64.0
CAN.G54.3 Capsicum annuum HOM05D004803 ORTHO05D005653 4.0e-18 94.4 78 62.8
Thhalv10028124m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 4.0e-18 94.4 73 65.8
MBI11_g11974_MAGBIO Magnolia biondii HOM05D004803 ORTHO05D005653 4.0e-18 94.4 61 70.5
Nn8g41089 Nelumbo nucifera HOM05D004803 ORTHO05D005653 4.0e-18 94.4 61 77.0
SalBow5G1850 Salvia bowleyana HOM05D004803 ORTHO05D005653 4.0e-18 94.4 79 67.1
Nitab4.5_0004188g0060 Nicotiana tabacum HOM05D004803 ORTHO05D005653 5.2e-18 94.0 78 60.3
Sopen07g005800 Solanum pennellii HOM05D004803 ORTHO05D005653 5.2e-18 94.0 78 61.5
Sopen07g005820 Solanum pennellii HOM05D004803 ORTHO05D005653 5.2e-18 94.0 78 61.5
Carub.0007s3380 Capsella rubella HOM05D004803 ORTHO05D005653 8.9e-18 93.2 75 64.0
PGSC0003DMG400021021 Solanum tuberosum HOM05D004803 ORTHO05D005653 8.9e-18 93.2 78 62.8
AL7G47670 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 1.2e-17 92.8 75 64.0
BcaB02g07882 Brassica carinata HOM05D004803 ORTHO05D005653 1.2e-17 92.8 75 61.3
PSO063G0965 Papaver somniferum HOM05D004803 ORTHO05D005653 2.6e-17 91.7 75 62.7
PGSC0003DMG402013687 Solanum tuberosum HOM05D004803 ORTHO05D005653 2.6e-17 91.7 79 62.0
Zm00001eb358730 Zea mays HOM05D004803 ORTHO05D005653 2.6e-17 91.7 80 61.2
Lalb_Chr09g0331931 Lupinus albus HOM05D004803 ORTHO05D005653 3.4e-17 91.3 55 80.0
TWI39G0014 Tripterygium wilfordii HOM05D004803 ORTHO05D005653 4.4e-17 90.9 75 65.3
Medtr3g061970 Medicago truncatula HOM05D004803 ORTHO05D005653 5.7e-17 90.5 72 66.7
Peaxi162Scf00320g00053 Petunia axillaris HOM05D004803 ORTHO05D005653 5.7e-17 90.5 79 62.0
DCAR_019792 Daucus carota HOM05D004803 ORTHO05D005653 1.7e-16 89.0 80 53.8
ECA240G2554 Erigeron canadensis HOM05D004803 ORTHO05D005653 1.7e-16 89.0 78 60.3
MD12G1085900 Malus domestica HOM05D004803 ORTHO05D005653 1.7e-16 89.0 64 71.9
THA.LOC104817698 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.7e-16 89.0 78 61.5
A04p14850 Brassica napus HOM05D004803 ORTHO05D005653 2.2e-16 88.6 68 66.2
BraA04t17117Z Brassica rapa HOM05D004803 ORTHO05D005653 2.2e-16 88.6 68 66.2
Solyc07g015970.3 Solanum lycopersicum HOM05D004803 ORTHO05D005653 2.2e-16 88.6 72 62.5
Aa31LG9G390 Aethionema arabicum HOM05D004803 ORTHO05D005653 2.8e-16 88.2 71 60.6
BcaC02g08933 Brassica carinata HOM05D004803 ORTHO05D005653 2.8e-16 88.2 68 66.2
C04p48720 Brassica napus HOM05D004803 ORTHO05D005653 2.8e-16 88.2 68 66.2
C04p48770 Brassica napus HOM05D004803 ORTHO05D005653 2.8e-16 88.2 68 66.2
C04p48830 Brassica napus HOM05D004803 ORTHO05D005653 2.8e-16 88.2 68 66.2
BolC4t26463H Brassica oleracea HOM05D004803 ORTHO05D005653 2.8e-16 88.2 68 66.2
Carub.0002s0057 Capsella rubella HOM05D004803 ORTHO05D005653 2.8e-16 88.2 79 60.8
A04p14790 Brassica napus HOM05D004803 ORTHO05D005653 4.9e-16 87.4 68 64.7
BraA04t17123Z Brassica rapa HOM05D004803 ORTHO05D005653 6.3e-16 87.0 68 64.7
Aa31LG2G1260 Aethionema arabicum HOM05D004803 ORTHO05D005653 8.3e-16 86.7 72 59.7
Aqoxy7G02691 Aquilegia oxysepala HOM05D004803 ORTHO05D005653 8.3e-16 86.7 73 64.4
A04p18870 Brassica napus HOM05D004803 ORTHO05D005653 1.1e-15 86.3 68 64.7
BcaB06g27645 Brassica carinata HOM05D004803 ORTHO05D005653 1.4e-15 85.9 68 61.8
CARHR272970 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.4e-15 85.9 75 58.7
PGR083G2338 Punica granatum HOM05D004803 ORTHO05D005653 1.4e-15 85.9 65 61.5
BolC4t26468H Brassica oleracea HOM05D004803 ORTHO05D005653 3.2e-15 84.7 59 67.8
Nitab4.5_0010123g0030 Nicotiana tabacum HOM05D004803 ORTHO05D005653 3.2e-15 84.7 70 62.9
Os01g0626300 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 9.2e-15 83.2 81 56.8
Lj4g0006469 Lotus japonicus HOM05D004803 ORTHO05D005653 1.6e-14 82.4 56 78.6
THA.LOC104823604 Tarenaya hassleriana HOM05D004803 ORTHO05D005653 1.6e-14 82.4 76 59.2
unitig_899.g15187 Utricularia gibba HOM05D004803 ORTHO05D005653 1.6e-14 82.4 80 53.8
Aa31LG6G6980 Aethionema arabicum HOM05D004803 ORTHO05D005653 4.6e-14 80.9 73 54.8
Sed0005262 Sechium edule HOM05D004803 ORTHO05D005653 4.6e-14 80.9 57 66.7
AUR62025705 Chenopodium quinoa HOM05D004803 ORTHO05D005653 5.9e-14 80.5 62 58.1
BcaC04g22640 Brassica carinata HOM05D004803 ORTHO05D005653 7.8e-14 80.1 72 59.7
Cc00_g00470 Coffea canephora HOM05D004803 ORTHO05D005653 7.8e-14 80.1 80 48.8
Ah.08g217890 Amaranthus hybridus HOM05D004803 ORTHO05D005653 1.3e-13 79.3 62 53.2
BcaB07g31446 Brassica carinata HOM05D004803 ORTHO05D005653 1.3e-13 79.3 75 56.0
Pp3c17_18760 Physcomitrium patens HOM05D004803 ORTHO05D005653 1.3e-13 79.3 45 73.3
CARHR046710 Cardamine hirsuta HOM05D004803 ORTHO05D005653 1.7e-13 79.0 69 55.1
BolC9t54609H Brassica oleracea HOM05D004803 ORTHO05D005653 2.3e-13 78.6 72 59.7
AUR62001322 Chenopodium quinoa HOM05D004803 ORTHO05D005653 2.3e-13 78.6 62 56.5
MD06G1130200 Malus domestica HOM05D004803 ORTHO05D005653 2.3e-13 78.6 64 67.2
Eucgr.H00014 Eucalyptus grandis HOM05D004803 ORTHO05D005653 2.9e-13 78.2 66 57.6
Thhalv10023788m.g Eutrema salsugineum HOM05D004803 ORTHO05D005653 3.9e-13 77.8 77 57.1
Pp3c14_20040 Physcomitrium patens HOM05D004803 ORTHO05D005653 3.9e-13 77.8 45 71.1
CARHR231140 Cardamine hirsuta HOM05D004803 ORTHO05D005653 5.0e-13 77.4 64 56.2
Os01g0732000 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 5.0e-13 77.4 64 54.7
Atru.chr9.1510 Acer truncatum HOM05D004803 ORTHO05D005653 6.6e-13 77.0 54 64.8
AT1G64220 Arabidopsis thaliana HOM05D004803 ORTHO05D005653 6.6e-13 77.0 78 55.1
Sp7g00380 Schrenkiella parvula HOM05D004803 ORTHO05D005653 6.6e-13 77.0 45 73.3
AL2G10780 Arabidopsis lyrata HOM05D004803 ORTHO05D005653 8.6e-13 76.6 44 77.3
BcaB07g31518 Brassica carinata HOM05D004803 ORTHO05D005653 1.9e-12 75.5 74 54.1
Os05g0583400 Oryza sativa ssp. japonica HOM05D004803 ORTHO05D005653 1.9e-12 75.5 46 67.4
Sc12g0011260 Simmondsia chinensis HOM05D004803 ORTHO05D005653 2.5e-12 75.1 75 50.7
Sp7g21690 Schrenkiella parvula HOM05D004803 ORTHO05D005653 5.6e-12 73.9 69 47.8
A09p14890 Brassica napus HOM05D004803 ORTHO05D005653 7.3e-12 73.6 73 53.4
C09p18010 Brassica napus HOM05D004803 ORTHO05D005653 7.3e-12 73.6 75 54.7
CBR_g29720 Chara braunii HOM05D004803 ORTHO05D005653 7.3e-12 73.6 53 54.7
BcaC04g22540 Brassica carinata HOM05D004803 ORTHO05D005653 9.5e-12 73.2 75 53.3
BcaC04g22545 Brassica carinata HOM05D004803 ORTHO05D005653 9.5e-12 73.2 75 53.3
BcaC04g22642 Brassica carinata HOM05D004803 ORTHO05D005653 9.5e-12 73.2 75 53.3
BcaC04g22643 Brassica carinata HOM05D004803 ORTHO05D005653 9.5e-12 73.2 75 53.3
BolC9t54698H Brassica oleracea HOM05D004803 ORTHO05D005653 9.5e-12 73.2 75 53.3
SMO167G0035 Selaginella moellendorffii HOM05D004803 ORTHO05D005653 1.2e-11 72.8 56 55.4
BraA09t37134Z Brassica rapa HOM05D004803 ORTHO05D005653 2.1e-11 72.0 72 52.8
CBR_g29719 Chara braunii HOM05D004803 ORTHO05D005653 8.0e-11 70.1 51 51.0
Mapoly0024s0138 Marchantia polymorpha HOM05D004803 ORTHO05D005653 1.8e-10 68.9 53 54.7
C04p48860 Brassica napus HOM05D004803 ORTHO05D005653 3.1e-10 68.2 64 56.2
Nn8g40643 Nelumbo nucifera HOM05D004803 ORTHO05D005653 1.7e-08 62.4 35 80.0


User provided reference genes

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