Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G300600 Phaseolus vulgaris HOM05D005092 ORTHO05D006073 5.5e-116 421.0 215 100.0
Glyma.05G218800 Glycine max HOM05D005092 ORTHO05D006073 5.7e-97 357.8 215 85.1
Glyma.08G024900 Glycine max HOM05D005092 ORTHO05D006073 1.2e-94 350.1 215 84.2
Lj4g0014821 Lotus japonicus HOM05D005092 ORTHO05D006073 4.8e-80 301.6 215 74.9
Medtr8g099720 Medicago truncatula HOM05D005092 ORTHO05D006073 6.3e-72 274.6 214 71.5
Ca_17461_v3 Cicer arietinum L. HOM05D005092 ORTHO05D006073 8.5e-69 264.2 218 67.0
CSS0040137 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.1e-68 263.8 215 68.8
Cfa011974 Carpinus fangiana HOM05D005092 ORTHO05D006073 4.2e-68 261.9 215 67.9
Haze_09102 Corylus avellana HOM05D005092 ORTHO05D006073 4.2e-68 261.9 215 67.9
Psat7g023960 Pisum sativum HOM05D005092 ORTHO05D006073 7.2e-68 261.2 217 66.8
QL02p029645 Quercus lobata HOM05D005092 ORTHO05D006073 2.7e-67 259.2 218 66.5
Dinv38813 Davidia involucrata HOM05D005092 ORTHO05D006073 3.6e-67 258.8 189 69.8
Cpa.g.sc15.7 Carica papaya HOM05D005092 ORTHO05D006073 4.7e-67 258.5 219 66.7
Potri.001G088300 Populus trichocarpa HOM05D005092 ORTHO05D006073 8.0e-67 257.7 220 66.8
Thecc.03G302300 Theobroma cacao HOM05D005092 ORTHO05D006073 1.0e-66 257.3 188 70.2
MD06G1111400 Malus domestica HOM05D005092 ORTHO05D006073 1.8e-66 256.5 156 78.8
Gohir.D12G239300 Gossypium hirsutum HOM05D005092 ORTHO05D006073 3.0e-66 255.8 209 66.5
Gorai.008G256400 Gossypium raimondii HOM05D005092 ORTHO05D006073 3.0e-66 255.8 209 66.5
Sabra01G0064600 Salix brachista HOM05D005092 ORTHO05D006073 4.0e-66 255.4 220 65.9
FAN13G0604 Fragaria x ananassa HOM05D005092 ORTHO05D006073 5.2e-66 255.0 154 79.9
Ciclev10022161m.g Citrus clementina HOM05D005092 ORTHO05D006073 8.8e-66 254.2 219 66.7
Gohir.A12G238200 Gossypium hirsutum HOM05D005092 ORTHO05D006073 8.8e-66 254.2 205 65.4
Cc08_g16360 Coffea canephora HOM05D005092 ORTHO05D006073 1.2e-65 253.8 205 65.9
CANSAT21G1519 Cannabis sativa HOM05D005092 ORTHO05D006073 2.0e-65 253.1 220 65.5
Sp2g00240 Schrenkiella parvula HOM05D005092 ORTHO05D006073 2.0e-65 253.1 208 63.9
DCAR_006514 Daucus carota HOM05D005092 ORTHO05D006073 3.4e-65 252.3 204 68.1
Actinidia04188 Actinidia chinensis HOM05D005092 ORTHO05D006073 4.4e-65 251.9 222 63.5
AT1G64510 Arabidopsis thaliana HOM05D005092 ORTHO05D006073 4.4e-65 251.9 205 64.4
FvH4_5g11660 Fragaria vesca HOM05D005092 ORTHO05D006073 4.4e-65 251.9 211 63.5
FAN18G1279 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.4e-65 251.9 211 63.5
FAN18G3046 Fragaria x ananassa HOM05D005092 ORTHO05D006073 4.4e-65 251.9 211 63.5
MD14G1132700 Malus domestica HOM05D005092 ORTHO05D006073 4.4e-65 251.9 214 63.6
THA.LOC104809322 Tarenaya hassleriana HOM05D005092 ORTHO05D006073 5.7e-65 251.5 190 68.4
RcHm_v2.0_Chr7g0186131 Rosa chinensis HOM05D005092 ORTHO05D006073 7.5e-65 251.1 217 62.7
BcaB07g31497 Brassica carinata HOM05D005092 ORTHO05D006073 9.8e-65 250.8 199 65.3
Dinv37500 Davidia involucrata HOM05D005092 ORTHO05D006073 9.8e-65 250.8 161 76.4
CiPaw.11G117500 Carya illinoinensis HOM05D005092 ORTHO05D006073 1.3e-64 250.4 222 65.3
Lalb_Chr09g0332211 Lupinus albus HOM05D005092 ORTHO05D006073 1.3e-64 250.4 219 65.8
arahy.Tifrunner.gnm1.ann1.CJJ4VI Arachis hypogaea HOM05D005092 ORTHO05D006073 1.7e-64 250.0 216 65.7
CARHR046440 Cardamine hirsuta HOM05D005092 ORTHO05D006073 1.7e-64 250.0 201 64.7
FAN08G0879 Fragaria x ananassa HOM05D005092 ORTHO05D006073 2.2e-64 249.6 214 64.0
Prupe.5G124200 Prunus persica HOM05D005092 ORTHO05D006073 2.2e-64 249.6 204 67.2
AL2G10290 Arabidopsis lyrata HOM05D005092 ORTHO05D006073 3.7e-64 248.8 215 61.9
Carub.0002s0024 Capsella rubella HOM05D005092 ORTHO05D006073 3.7e-64 248.8 215 61.4
Aa31LG2G1490 Aethionema arabicum HOM05D005092 ORTHO05D006073 4.9e-64 248.4 210 62.4
Lsat_1_v5_gn_6_9541 Lactuca sativa HOM05D005092 ORTHO05D006073 4.9e-64 248.4 155 79.4
BcaC04g22575 Brassica carinata HOM05D005092 ORTHO05D006073 6.3e-64 248.1 203 65.0
Thhalv10023690m.g Eutrema salsugineum HOM05D005092 ORTHO05D006073 6.3e-64 248.1 215 62.3
FAN04G2351 Fragaria x ananassa HOM05D005092 ORTHO05D006073 6.3e-64 248.1 213 63.8
Nitab4.5_0006302g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 8.3e-64 247.7 197 68.0
A09p14650 Brassica napus HOM05D005092 ORTHO05D006073 1.1e-63 247.3 202 64.9
C09p17310 Brassica napus HOM05D005092 ORTHO05D006073 1.1e-63 247.3 203 65.0
arahy.Tifrunner.gnm1.ann1.99ISIC Arachis hypogaea HOM05D005092 ORTHO05D006073 1.4e-63 246.9 206 66.5
BraA09t37111Z Brassica rapa HOM05D005092 ORTHO05D006073 1.4e-63 246.9 217 63.1
C09p17730 Brassica napus HOM05D005092 ORTHO05D006073 1.8e-63 246.5 203 65.0
BolC9t54633H Brassica oleracea HOM05D005092 ORTHO05D006073 1.8e-63 246.5 203 65.0
Manes.01G045210 Manihot esculenta HOM05D005092 ORTHO05D006073 3.1e-63 245.7 215 64.2
Nitab4.5_0002367g0080 Nicotiana tabacum HOM05D005092 ORTHO05D006073 4.1e-63 245.4 198 68.2
TAR425G0003 Trochodendron aralioides HOM05D005092 ORTHO05D006073 4.1e-63 245.4 223 63.2
BcaB07g31470 Brassica carinata HOM05D005092 ORTHO05D006073 5.4e-63 245.0 213 64.3
A09p14390 Brassica napus HOM05D005092 ORTHO05D006073 5.4e-63 245.0 202 63.4
BolC9t54667H Brassica oleracea HOM05D005092 ORTHO05D006073 5.4e-63 245.0 218 62.4
Peaxi162Scf00117g00912 Petunia axillaris HOM05D005092 ORTHO05D006073 7.0e-63 244.6 157 75.8
PGR031G0045 Punica granatum HOM05D005092 ORTHO05D006073 7.0e-63 244.6 271 53.9
BraA09t37086Z Brassica rapa HOM05D005092 ORTHO05D006073 9.2e-63 244.2 217 60.8
CSS0022378 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-62 243.8 204 67.6
CSS0038140 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-62 243.8 204 67.6
Nitab4.5_0004515g0010 Nicotiana tabacum HOM05D005092 ORTHO05D006073 1.2e-62 243.8 226 61.9
PGSC0003DMG400012136 Solanum tuberosum HOM05D005092 ORTHO05D006073 1.2e-62 243.8 197 66.0
TWI81G0988 Tripterygium wilfordii HOM05D005092 ORTHO05D006073 1.2e-62 243.8 219 62.1
COL.COLO4_10743 Corchorus olitorius HOM05D005092 ORTHO05D006073 5.9e-62 241.5 214 60.7
HanXRQChr17g0535041 Helianthus annuus HOM05D005092 ORTHO05D006073 7.7e-62 241.1 165 73.9
PSO135G0789 Papaver somniferum HOM05D005092 ORTHO05D006073 7.7e-62 241.1 209 62.2
Sed0021119 Sechium edule HOM05D005092 ORTHO05D006073 7.7e-62 241.1 215 63.7
TPR.G3401 Trifolium pratense HOM05D005092 ORTHO05D006073 1.3e-61 240.4 220 61.4
CSS0048233 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.3e-61 239.6 204 67.2
PSO384G1727 Papaver somniferum HOM05D005092 ORTHO05D006073 2.3e-61 239.6 219 63.9
Aqoxy7G00063 Aquilegia oxysepala HOM05D005092 ORTHO05D006073 2.9e-61 239.2 168 72.6
Duzib068G1058 Durio zibethinus HOM05D005092 ORTHO05D006073 2.9e-61 239.2 189 66.1
Solyc08g082690.2 Solanum lycopersicum HOM05D005092 ORTHO05D006073 3.8e-61 238.8 197 65.0
Sopen08g030910 Solanum pennellii HOM05D005092 ORTHO05D006073 3.8e-61 238.8 197 65.0
Nn3g18958 Nelumbo nucifera HOM05D005092 ORTHO05D006073 6.6e-61 238.0 220 63.6
HanXRQChr07g0190751 Helianthus annuus HOM05D005092 ORTHO05D006073 1.1e-60 237.3 211 63.5
Duzib068G1375 Durio zibethinus HOM05D005092 ORTHO05D006073 1.9e-60 236.5 216 61.6
Atru.chr9.1939 Acer truncatum HOM05D005092 ORTHO05D006073 5.6e-60 235.0 215 61.4
Duzib068G0950 Durio zibethinus HOM05D005092 ORTHO05D006073 7.3e-60 234.6 188 64.9
AUR62007009 Chenopodium quinoa HOM05D005092 ORTHO05D006073 9.5e-60 234.2 181 69.6
Actinidia22183 Actinidia chinensis HOM05D005092 ORTHO05D006073 1.6e-59 233.4 215 61.9
ATR0602G266 Amborella trichopoda HOM05D005092 ORTHO05D006073 1.6e-59 233.4 205 64.9
AUR62019873 Chenopodium quinoa HOM05D005092 ORTHO05D006073 1.6e-59 233.4 224 63.8
EL10Ac5g12949 Beta vulgaris HOM05D005092 ORTHO05D006073 4.7e-59 231.9 223 60.5
Hma1.2p1_0440F.1_g153550 Hydrangea macrophylla HOM05D005092 ORTHO05D006073 8.0e-59 231.1 218 61.9
Lj2A163T69 Lonicera japonica HOM05D005092 ORTHO05D006073 1.4e-58 230.3 229 60.7
Ah.07g197620 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.8e-58 229.9 220 60.9
Ah.12g052820 Amaranthus hybridus HOM05D005092 ORTHO05D006073 1.8e-58 229.9 166 70.5
MBI07_g24777_MAGBIO Magnolia biondii HOM05D005092 ORTHO05D006073 3.0e-58 229.2 206 64.6
BcaC04g22614 Brassica carinata HOM05D005092 ORTHO05D006073 1.2e-57 227.3 190 64.2
CDE08G0689 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 2.0e-57 226.5 211 61.6
CDE02G4008 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 3.4e-57 225.7 206 61.7
CDE02G0126 Ceratophyllum demersum HOM05D005092 ORTHO05D006073 1.3e-56 223.8 155 72.3
Sc07g0010130 Simmondsia chinensis HOM05D005092 ORTHO05D006073 1.7e-56 223.4 161 70.8
CSS0033480 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 2.2e-56 223.0 224 60.7
MELO3C005759.2 Cucumis melo HOM05D005092 ORTHO05D006073 1.1e-55 220.7 208 60.6
Nitab4.5_0015800g0020 Nicotiana tabacum HOM05D005092 ORTHO05D006073 2.4e-55 219.5 179 66.5
Rhsim02G0248400 Rhododendron simsii HOM05D005092 ORTHO05D006073 4.1e-55 218.8 213 58.7
Lalb_Chr14g0362701 Lupinus albus HOM05D005092 ORTHO05D006073 7.8e-54 214.5 215 57.7
Migut.M00752 Erythranthe guttata HOM05D005092 ORTHO05D006073 3.0e-53 212.6 194 58.2
MSTRG.14949 Avicennia marina HOM05D005092 ORTHO05D006073 3.9e-53 212.2 217 56.2
SalBow8G0392 Salvia bowleyana HOM05D005092 ORTHO05D006073 5.0e-53 211.8 194 59.3
HanXRQChr17g0534641 Helianthus annuus HOM05D005092 ORTHO05D006073 3.3e-52 209.1 121 83.5
Lj8A204G63 Lonicera japonica HOM05D005092 ORTHO05D006073 3.6e-51 205.7 154 68.8
unitig_62.g23053 Utricularia gibba HOM05D005092 ORTHO05D006073 3.6e-51 205.7 196 57.7
CsaV3_5G001930 Cucumis sativus L. HOM05D005092 ORTHO05D006073 6.2e-51 204.9 208 58.7
SGA_v2.0_scaffold34G13767 Striga asiatica HOM05D005092 ORTHO05D006073 2.0e-49 199.9 122 77.9
CAN.G567.28 Capsicum annuum HOM05D005092 ORTHO05D006073 5.8e-49 198.4 310 42.6
Hund11375 Selenicereus undatus HOM05D005092 ORTHO05D006073 1.7e-48 196.8 208 53.4
HPP92_003891 Vanilla planifolia HOM05D005092 ORTHO05D006073 3.2e-47 192.6 154 61.7
Migut.M00753 Erythranthe guttata HOM05D005092 ORTHO05D006073 1.6e-46 190.3 146 65.8
HPP92_003874 Vanilla planifolia HOM05D003037 ORTHO05D003659 1.6e-46 190.3 156 60.3
Peaxi162Scf00074g00540 Petunia axillaris HOM05D005092 ORTHO05D006073 2.0e-46 189.9 154 63.6
SalBow7G2047 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.3e-44 182.2 223 49.3
SalBow7G3059 Salvia bowleyana HOM05D005092 ORTHO05D006073 4.3e-44 182.2 223 49.3
vmacro11536 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 2.1e-43 179.9 222 50.5
Os03g0843400 Oryza sativa ssp. japonica HOM05D005092 ORTHO05D006073 3.6e-43 179.1 132 68.2
GSVIVG01019593001 Vitis vinifera HOM05D005092 ORTHO05D006073 8.1e-43 177.9 102 84.3
Zm00001eb064130 Zea mays HOM05D005092 ORTHO05D006073 2.9e-40 169.5 217 49.3
ECA233G5643 Erigeron canadensis HOM05D005092 ORTHO05D006073 3.7e-40 169.1 173 57.8
Atru.chr10.1577 Acer truncatum HOM05D005092 ORTHO05D006073 5.6e-36 155.2 93 77.4
Pp3c9_9180 Physcomitrium patens HOM05D005092 ORTHO05D006073 2.6e-33 146.4 198 46.0
Pp3c15_17560 Physcomitrium patens HOM05D005092 ORTHO05D006073 7.6e-33 144.8 200 44.5
Sabra03G0103200 Salix brachista HOM05D005092 ORTHO05D006073 1.3e-32 144.1 225 45.8
Mapoly0115s0060 Marchantia polymorpha HOM05D005092 ORTHO05D006073 1.7e-32 143.7 131 51.9
SMO141G0012 Selaginella moellendorffii HOM05D005092 ORTHO05D006073 2.9e-32 142.9 106 59.4
Eucgr.D01771 Eucalyptus grandis HOM05D005092 ORTHO05D006073 6.4e-32 141.7 81 82.7
CBR_g45689 Chara braunii HOM05D005092 ORTHO05D006073 2.4e-31 139.8 115 57.4
AagrBONN_evm.TU.Sc2ySwM_117.1171 Anthoceros agrestis HOM05D005092 ORTHO05D006073 3.5e-30 136.0 129 51.9
SEGI_34901 Sequoiadendron giganteum HOM05D005092 ORTHO05D006073 5.6e-28 128.6 196 45.4
CSS0046261 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-25 120.9 67 85.1
CSS0048158 Camellia sinensis var. sinensis HOM05D005092 ORTHO05D006073 1.2e-25 120.9 67 85.1
vmacro22558 Vaccinium macrocarpon HOM05D005092 ORTHO05D006073 1.5e-25 120.6 80 72.5
ClCG01G001790 Citrullus lanatus HOM05D005092 ORTHO05D006073 1.4e-18 97.4 140 44.3
Nn1g00282 Nelumbo nucifera HOM05D005092 ORTHO05D006073 1.8e-18 97.1 140 49.3
Oeu061337.1 Olea europaea HOM05D005092 ORTHO05D006073 9.0e-18 94.7 70 67.1
A01p35480 Brassica napus HOM05D005092 ORTHO05D006073 1.3e-13 80.9 50 76.0
HanXRQChr07g0190051 Helianthus annuus HOM05D005092 ORTHO05D006073 1.1e-12 77.8 130 39.2
FAN28G1308 Fragaria x ananassa HOM05D022793 ORTHO05D200777 1.8e-10 70.5 63 60.3
A04p11060 Brassica napus HOM05D023372 ORTHO05D024533 5.5e-07 58.9 38 76.3


User provided reference genes

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