Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G298000 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 3.6e-146 521.5 259 100.0
VMungo0251G1927 Vigna mungo HOM05D000749 ORTHO05D005685 6.3e-135 484.2 259 94.2
Glyma.08G022600 Glycine max HOM05D000749 ORTHO05D005685 1.1e-123 446.8 259 86.5
Glyma.05G216800 Glycine max HOM05D000749 ORTHO05D005685 4.7e-122 441.4 259 86.5
arahy.Tifrunner.gnm1.ann1.1JV6NN Arachis hypogaea HOM05D000749 ORTHO05D005685 1.8e-105 386.3 259 79.2
Medtr8g099455 Medicago truncatula HOM05D000749 ORTHO05D005685 2.3e-105 386.0 262 77.1
arahy.Tifrunner.gnm1.ann1.YIX88E Arachis hypogaea HOM05D000749 ORTHO05D005685 1.5e-104 383.3 259 78.8
Lalb_Chr09g0332451 Lupinus albus HOM05D000749 ORTHO05D005685 3.4e-104 382.1 263 75.7
Lj4g0022263 Lotus japonicus HOM05D000749 ORTHO05D005685 6.6e-100 367.9 236 79.2
Ca_17481_v3 Cicer arietinum L. HOM05D000749 ORTHO05D004893 9.2e-94 347.4 256 72.3
Ca_17505_v3 Cicer arietinum L. HOM05D000749 ORTHO05D005685 9.2e-94 347.4 256 72.3
Psat7g025640 Pisum sativum HOM05D000749 ORTHO05D005685 7.8e-93 344.4 219 79.9
COL.COLO4_10708 Corchorus olitorius HOM05D000749 ORTHO05D005685 4.3e-91 338.6 258 67.8
Manes.01G049300 Manihot esculenta HOM05D000749 ORTHO05D005685 5.8e-88 328.2 237 70.0
Haze_09069 Corylus avellana HOM05D000749 ORTHO05D005685 1.1e-86 323.9 261 65.1
Dinv37528 Davidia involucrata HOM05D000749 ORTHO05D005685 7.1e-86 321.2 237 72.2
ClCG01G001690 Citrullus lanatus HOM05D000749 ORTHO05D005685 1.2e-85 320.5 260 65.0
Potri.003G140500 Populus trichocarpa HOM05D000749 ORTHO05D005685 1.2e-85 320.5 260 65.4
Thecc.03G298600 Theobroma cacao HOM05D000749 ORTHO05D005685 1.6e-85 320.1 258 67.1
Hma1.2p1_0359F.1_g135200 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 4.6e-85 318.5 237 68.4
CSS0014286 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.3e-84 317.0 248 65.7
CSS0022068 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 2.3e-84 316.2 248 65.7
Sed0020991 Sechium edule HOM05D000749 ORTHO05D005685 6.6e-84 314.7 237 68.4
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.5e-83 313.5 235 68.5
Gorai.008G254700 Gossypium raimondii HOM05D000749 ORTHO05D005685 1.9e-83 313.2 256 66.0
CANSAT21G1880 Cannabis sativa HOM05D000749 ORTHO05D005685 3.3e-83 312.4 237 69.2
CiPaw.11G120800 Carya illinoinensis HOM05D000749 ORTHO05D005685 3.3e-83 312.4 259 63.3
VMungo1215G3291 Vigna mungo HOM05D000749 ORTHO05D005685 4.3e-83 312.0 237 67.5
Gohir.A12G236700 Gossypium hirsutum HOM05D000749 ORTHO05D005685 5.6e-83 311.6 256 66.0
CSS0029811 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.3e-82 310.5 243 64.6
CSS0041880 Camellia sinensis var. sinensis HOM05D000749 ORTHO05D005685 1.6e-82 310.1 243 64.6
QL02p030312 Quercus lobata HOM05D000749 ORTHO05D005685 1.6e-82 310.1 257 63.0
FAN18G2450 Fragaria x ananassa HOM05D000749 ORTHO05D005685 3.6e-82 308.9 266 60.5
PGR042G1555 Punica granatum HOM05D000749 ORTHO05D005685 3.1e-81 305.8 261 63.2
TWI81G0603 Tripterygium wilfordii HOM05D000749 ORTHO05D005685 3.1e-81 305.8 256 64.1
AL7G29440 Arabidopsis lyrata HOM05D000749 ORTHO05D005685 4.0e-81 305.4 259 64.5
Sabra03G0101500 Salix brachista HOM05D000749 ORTHO05D005685 5.3e-81 305.1 259 64.5
Sabra01G0067500 Salix brachista HOM05D000749 ORTHO05D005685 6.9e-81 304.7 267 61.4
Potri.001G091100 Populus trichocarpa HOM05D000749 ORTHO05D005685 9.0e-81 304.3 238 66.8
Duzib084G0187 Durio zibethinus HOM05D000749 ORTHO05D005685 1.2e-80 303.9 258 63.6
FvH4_5g04660 Fragaria vesca HOM05D000749 ORTHO05D005685 1.2e-80 303.9 262 59.2
LjContig00312_ERROPOS870357g0005368 Lotus japonicus HOM05D000749 ORTHO05D005685 2.0e-80 303.1 201 75.6
Carub.0007s1721 Capsella rubella HOM05D000749 ORTHO05D005685 4.5e-80 302.0 257 63.0
FAN13G3049 Fragaria x ananassa HOM05D000749 ORTHO05D005685 7.6e-80 301.2 261 59.0
THA.LOC104806439 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 7.6e-80 301.2 238 65.5
Cfa012001 Carpinus fangiana HOM05D000749 ORTHO05D004893 3.8e-79 298.9 221 68.8
vmacro11358 Vaccinium macrocarpon HOM05D000749 ORTHO05D005685 3.8e-79 298.9 234 65.4
AT4G23895 Arabidopsis thaliana HOM05D000749 ORTHO05D004893 4.9e-79 298.5 236 66.9
CiPaw.12G082400 Carya illinoinensis HOM05D000749 ORTHO05D005685 4.9e-79 298.5 237 64.1
FAN18G0718 Fragaria x ananassa HOM05D000749 ORTHO05D005685 1.1e-78 297.4 253 59.7
ECA246G0427 Erigeron canadensis HOM05D000749 ORTHO05D005685 1.4e-78 297.0 238 63.4
Lj2A167G41 Lonicera japonica HOM05D000749 ORTHO05D005685 1.9e-78 296.6 229 68.1
RcHm_v2.0_Chr7g0194721 Rosa chinensis HOM05D000749 ORTHO05D005685 2.4e-78 296.2 256 59.4
Glyma.11G017700 Glycine max HOM05D000749 ORTHO05D005685 3.2e-78 295.8 202 74.8
TPR.G25592 Trifolium pratense HOM05D000749 ORTHO05D005685 3.2e-78 295.8 205 73.7
Prupe.5G120700 Prunus persica HOM05D000749 ORTHO05D004893 7.1e-78 294.7 261 59.4
SGA_v2.0_scaffold305G47984 Striga asiatica HOM05D000749 ORTHO05D005685 7.1e-78 294.7 241 62.2
Atru.chr9.1976 Acer truncatum HOM05D000749 ORTHO05D005685 1.2e-77 293.9 258 61.2
Atru.chr9.1991 Acer truncatum HOM05D000749 ORTHO05D005685 1.2e-77 293.9 258 61.2
HanXRQChr17g0534821 Helianthus annuus HOM05D000749 ORTHO05D005685 1.2e-77 293.9 233 62.7
FAN08G1955 Fragaria x ananassa HOM05D000749 ORTHO05D005685 2.1e-77 293.1 268 57.1
TAR629G1059 Trochodendron aralioides HOM05D000749 ORTHO05D005685 2.1e-77 293.1 243 63.0
Migut.A00638 Erythranthe guttata HOM05D000749 ORTHO05D005685 3.5e-77 292.4 234 62.4
Duzib205G1799 Durio zibethinus HOM05D000749 ORTHO05D005685 4.6e-77 292.0 257 61.5
Actinidia22163 Actinidia chinensis HOM05D000749 ORTHO05D005685 6.0e-77 291.6 237 63.7
DCAR_029896 Daucus carota HOM05D000749 ORTHO05D005685 6.0e-77 291.6 244 63.9
CsaV3_5G001830 Cucumis sativus L. HOM05D000749 ORTHO05D005685 1.3e-76 290.4 217 69.1
Sp7g21860 Schrenkiella parvula HOM05D000749 ORTHO05D005685 1.8e-76 290.0 261 60.2
Rhsim02G0244300 Rhododendron simsii HOM05D000749 ORTHO05D005685 2.3e-76 289.7 241 63.1
CARHR231300 Cardamine hirsuta HOM05D000749 ORTHO05D005685 3.0e-76 289.3 231 64.9
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 8.7e-76 287.7 221 67.4
FAN13G2768 Fragaria x ananassa HOM05D000749 ORTHO05D005685 8.7e-76 287.7 265 58.1
Hma1.2p1_0440F.1_g153310 Hydrangea macrophylla HOM05D000749 ORTHO05D005685 8.7e-76 287.7 249 62.2
arahy.Tifrunner.gnm1.ann1.JB76D2 Arachis hypogaea HOM05D000749 ORTHO05D005685 1.1e-75 287.3 203 70.9
SalBow1G4618 Salvia bowleyana HOM05D000749 ORTHO05D005685 2.5e-75 286.2 240 62.9
THA.LOC104813042 Tarenaya hassleriana HOM05D000749 ORTHO05D005685 2.5e-75 286.2 237 64.1
Oeu063515.1 Olea europaea HOM05D000749 ORTHO05D005685 3.3e-75 285.8 237 63.3
BcaNung04079 Brassica carinata HOM05D000749 ORTHO05D005685 4.3e-75 285.4 241 63.5
Aa31LG6G7160 Aethionema arabicum HOM05D000749 ORTHO05D005685 9.6e-75 284.3 238 62.2
BraA03t14551Z Brassica rapa HOM05D000749 ORTHO05D005685 2.1e-74 283.1 244 63.5
Lalb_Chr09g0320651 Lupinus albus HOM05D000749 ORTHO05D005685 3.7e-74 282.3 189 73.0
C07p53200 Brassica napus HOM05D000749 ORTHO05D005685 1.4e-73 280.4 240 63.8
BolC7t45815H Brassica oleracea HOM05D000749 ORTHO05D005685 1.4e-73 280.4 240 63.8
Lsat_1_v5_gn_6_83941 Lactuca sativa HOM05D000749 ORTHO05D004893 1.4e-73 280.4 234 60.7
MD06G1107400 Malus domestica HOM05D000749 ORTHO05D005685 4.0e-73 278.9 237 61.2
Medtr5g009310 Medicago truncatula HOM05D000749 ORTHO05D005685 4.0e-73 278.9 198 71.7
Solyc12g055950.2 Solanum lycopersicum HOM05D000749 ORTHO05D005685 4.0e-73 278.9 240 61.2
MSTRG.25679 Avicennia marina HOM05D000749 ORTHO05D005685 5.3e-73 278.5 238 62.2
A03p54840 Brassica napus HOM05D000749 ORTHO05D005685 5.3e-73 278.5 241 62.2
Sopen12g024420 Solanum pennellii HOM05D000749 ORTHO05D005685 1.2e-72 277.3 240 60.8
Gohir.D12G237900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.5e-72 276.9 197 71.6
Lsat_1_v5_gn_3_10900 Lactuca sativa HOM05D000749 ORTHO05D004893 1.5e-72 276.9 233 59.2
Ciclev10022306m.g Citrus clementina HOM05D000749 ORTHO05D005685 2.0e-72 276.6 199 68.3
Eucgr.E00870 Eucalyptus grandis HOM05D000749 ORTHO05D005685 4.5e-72 275.4 280 55.0
Peaxi162Scf00117g01125 Petunia axillaris HOM05D000749 ORTHO05D005685 1.7e-71 273.5 239 60.7
MELO3C005770.2 Cucumis melo HOM05D000749 ORTHO05D005685 2.2e-71 273.1 204 68.1
BcaNung04243 Brassica carinata HOM05D000749 ORTHO05D005685 2.9e-71 272.7 241 62.2
Nitab4.5_0000726g0060 Nicotiana tabacum HOM05D000749 ORTHO05D005685 4.9e-71 271.9 235 60.4
MBI06_g08470_MAGBIO Magnolia biondii HOM05D000749 ORTHO05D005685 6.4e-71 271.6 247 60.3
PSO135G0827 Papaver somniferum HOM05D000749 ORTHO05D005685 1.1e-70 270.8 234 61.1
Gohir.D08G125900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.4e-70 270.4 196 69.4
Gorai.004G132800 Gossypium raimondii HOM05D000749 ORTHO05D005685 2.5e-70 269.6 197 69.0
CDE10G0735 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 5.5e-70 268.5 239 59.0
CAN.G390.4 Capsicum annuum HOM05D000749 ORTHO05D005685 7.1e-70 268.1 234 59.0
Nitab4.5_0006775g0110 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.1e-69 266.5 180 71.7
Sed0010333 Sechium edule HOM05D000749 ORTHO05D005685 2.1e-69 266.5 178 71.9
Cc08_g16120 Coffea canephora HOM05D000749 ORTHO05D005685 3.5e-69 265.8 175 73.7
AUR62019844 Chenopodium quinoa HOM05D000749 ORTHO05D005685 1.0e-68 264.2 275 55.3
HanXRQChr13g0415321 Helianthus annuus HOM05D000749 ORTHO05D005685 1.0e-68 264.2 181 70.2
Thhalv10026064m.g Eutrema salsugineum HOM05D000749 ORTHO05D005685 3.9e-68 262.3 197 67.5
Phvul.002G164200 Phaseolus vulgaris HOM05D000749 ORTHO05D005685 5.1e-68 261.9 201 67.7
PSO384G3968 Papaver somniferum HOM05D000749 ORTHO05D005685 6.7e-68 261.5 234 60.7
Aqoxy7G00094 Aquilegia oxysepala HOM05D000749 ORTHO05D005685 8.7e-68 261.2 238 60.5
BcaB03g12399 Brassica carinata HOM05D000749 ORTHO05D005685 1.5e-67 260.4 221 63.3
MD14G1129100 Malus domestica HOM05D000749 ORTHO05D005685 1.5e-67 260.4 176 71.0
AUR62010845 Chenopodium quinoa HOM05D000749 ORTHO05D005685 2.5e-67 259.6 275 54.9
Sc07g0010060 Simmondsia chinensis HOM05D000749 ORTHO05D005685 1.6e-66 256.9 273 54.2
Sc22g0004990 Simmondsia chinensis HOM05D000749 ORTHO05D005685 3.7e-66 255.8 273 53.5
Peaxi162Scf00074g00738 Petunia axillaris HOM05D000749 ORTHO05D005685 6.2e-66 255.0 182 70.3
Ah.12g052570 Amaranthus hybridus HOM05D000749 ORTHO05D005685 1.8e-65 253.4 281 51.2
Nitab4.5_0004010g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 4.0e-65 252.3 239 57.7
PGSC0003DMG400012277 Solanum tuberosum HOM05D000749 ORTHO05D005685 1.2e-64 250.8 177 68.4
CAN.G1804.10 Capsicum annuum HOM05D000749 ORTHO05D005685 4.5e-64 248.8 172 68.0
SalBow1G0265 Salvia bowleyana HOM05D000749 ORTHO05D005685 5.8e-64 248.4 327 46.2
Hund14218 Selenicereus undatus HOM05D000749 ORTHO05D005685 7.6e-64 248.1 191 65.4
TPR.G3419 Trifolium pratense HOM05D000749 ORTHO05D005685 7.6e-64 248.1 167 76.6
Nn1g00225 Nelumbo nucifera HOM05D000749 ORTHO05D005685 1.0e-63 247.7 164 72.0
Hund11388 Selenicereus undatus HOM05D000749 ORTHO05D005685 1.0e-63 247.7 274 51.1
Zm00001eb297840 Zea mays HOM05D000749 ORTHO05D005685 2.2e-63 246.5 235 52.3
Solyc08g082420.3 Solanum lycopersicum HOM05D000749 ORTHO05D005685 8.4e-63 244.6 177 66.7
Sopen08g030670 Solanum pennellii HOM05D000749 ORTHO05D005685 8.4e-63 244.6 177 66.7
Os05g0595500 Oryza sativa ssp. japonica HOM05D000749 ORTHO05D005685 1.9e-62 243.4 233 53.6
EL10Ac5g12920 Beta vulgaris HOM05D000749 ORTHO05D004893 2.5e-62 243.0 245 55.5
unitig_88.g27644 Utricularia gibba HOM05D000749 ORTHO05D005685 3.2e-62 242.7 158 69.6
ECA240G0537 Erigeron canadensis HOM05D000749 ORTHO05D005685 2.1e-61 240.0 237 52.7
HPP92_008182 Vanilla planifolia HOM05D000749 ORTHO05D005685 6.0e-61 238.4 234 53.8
PGSC0003DMG400004994 Solanum tuberosum HOM05D000749 ORTHO05D005685 8.7e-60 234.6 162 69.8
HanXRQChr03g0083461 Helianthus annuus HOM05D000749 ORTHO05D005685 4.3e-59 232.3 199 61.8
unitig_0.g1147 Utricularia gibba HOM05D000749 ORTHO05D005685 2.2e-58 229.9 234 51.7
ATR0602G082 Amborella trichopoda HOM05D000749 ORTHO05D005685 9.0e-57 224.6 228 52.6
Gohir.A08G112900 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.4e-54 217.2 149 69.8
Nitab4.5_0001210g0100 Nicotiana tabacum HOM05D000749 ORTHO05D005685 2.5e-54 216.5 137 75.9
ECA240G3820 Erigeron canadensis HOM05D000749 ORTHO05D005685 6.1e-53 211.8 161 66.5
BolC3t20284H Brassica oleracea HOM05D000749 ORTHO05D005685 6.7e-52 208.4 189 59.3
Gohir.D12G237901 Gossypium hirsutum HOM05D000749 ORTHO05D005685 1.1e-51 207.6 136 75.0
BcaC01g00478 Brassica carinata HOM05D000749 ORTHO05D005685 1.3e-47 194.1 215 52.1
C03p80360 Brassica napus HOM05D000749 ORTHO05D005685 1.3e-47 194.1 215 52.1
MSTRG.13887 Avicennia marina HOM05D000749 ORTHO05D005685 2.5e-46 189.9 124 69.4
CDE10G1055 Ceratophyllum demersum HOM05D000749 ORTHO05D005685 8.8e-44 181.4 125 70.4
Mapoly0105s0026 Marchantia polymorpha HOM05D000749 ORTHO05D005685 2.0e-35 153.7 218 44.0
Pp3c8_7850 Physcomitrium patens HOM05D000749 ORTHO05D005685 5.7e-35 152.1 226 41.2
BcaC09g50933 Brassica carinata HOM05D000749 ORTHO05D005685 1.8e-28 130.6 116 58.6
TPR.G18933 Trifolium pratense HOM05D000749 ORTHO05D005685 1.3e-26 124.4 90 70.0
Cpa.g.sc79.31 Carica papaya HOM05D000749 ORTHO05D005685 5.5e-22 109.0 108 57.4
AagrBONN_evm.TU.Sc2ySwM_344.2051 Anthoceros agrestis HOM05D000749 ORTHO05D005685 2.1e-21 107.1 106 52.8
Pp3c24_4620 Physcomitrium patens HOM05D000749 ORTHO05D005685 3.0e-20 103.2 141 45.4
CBR_g4807 Chara braunii HOM05D000749 ORTHO05D005685 2.4e-17 93.6 175 34.3
FAN04G2853 Fragaria x ananassa HOM05D000749 ORTHO05D004893 2.1e-13 80.5 60 60.0
RcHm_v2.0_Chr1g0343991 Rosa chinensis HOM05D000749 ORTHO05D005685 1.4e-09 67.8 48 58.3


User provided reference genes

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