Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G296900 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 2.8e-97 358.6 183 100.0
VMungo0251G1458 Vigna mungo HOM05D005006 ORTHO05D005903 6.8e-83 310.8 191 86.9
Glyma.08G021800 Glycine max HOM05D005006 ORTHO05D005903 3.1e-67 258.8 183 78.7
Glyma.05G215700 Glycine max HOM05D005006 ORTHO05D005903 2.0e-66 256.1 181 77.9
Glyma.11G018400 Glycine max HOM05D005006 ORTHO05D005903 2.3e-46 189.5 165 65.5
Glyma.01G224600 Glycine max HOM05D005006 ORTHO05D005903 3.9e-46 188.7 166 65.1
Lj4g0012980 Lotus japonicus HOM05D005006 ORTHO05D005903 8.4e-41 171.0 185 58.4
Psat0s4474g0040 Pisum sativum HOM05D005006 ORTHO05D005903 4.6e-39 165.2 182 55.5
Medtr5g009490 Medicago truncatula HOM05D005006 ORTHO05D005903 1.7e-38 163.3 192 52.6
VMungo1215G3249 Vigna mungo HOM05D005266 ORTHO05D006416 1.7e-38 163.3 153 61.4
Medtr8g099340 Medicago truncatula HOM05D005006 ORTHO05D005903 3.3e-37 159.1 183 53.6
Ca_17490_v3 Cicer arietinum L. HOM05D005006 ORTHO05D005903 4.3e-37 158.7 168 57.1
TPR.G6668 Trifolium pratense HOM05D005006 ORTHO05D005903 3.6e-36 155.6 190 51.1
Psat7g027080 Pisum sativum HOM05D005006 ORTHO05D005903 3.1e-35 152.5 193 53.9
Lalb_Chr05g0224201 Lupinus albus HOM05D005006 ORTHO05D005903 9.0e-35 151.0 188 53.2
LjContig00312_ERROPOS870357g0014674 Lotus japonicus HOM05D005006 ORTHO05D005903 3.4e-34 149.1 190 53.2
CiPaw.11G123200 Carya illinoinensis HOM05D005006 ORTHO05D005903 1.8e-30 136.7 182 50.0
Sp7g00270 Schrenkiella parvula HOM05D005006 ORTHO05D005903 5.1e-30 135.2 176 51.7
BraA07t29781Z Brassica rapa HOM05D005006 ORTHO05D005903 1.9e-29 133.3 183 50.8
A07p20950 Brassica napus HOM05D005006 ORTHO05D005903 3.3e-29 132.5 183 50.3
TWI15G0537 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 1.3e-28 130.6 190 46.8
C06p20240 Brassica napus HOM05D005006 ORTHO05D005903 1.6e-28 130.2 200 48.0
BolC6t37205H Brassica oleracea HOM05D005006 ORTHO05D005903 1.6e-28 130.2 200 48.0
BcaB02g07876 Brassica carinata HOM05D005006 ORTHO05D005903 2.8e-28 129.4 183 49.2
FAN13G1208 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.8e-28 129.4 189 47.1
FAN18G0263 Fragaria x ananassa HOM05D005006 ORTHO05D005903 2.8e-28 129.4 189 47.1
FvH4_5g04150 Fragaria vesca HOM05D005006 ORTHO05D005903 1.4e-27 127.1 169 49.1
BcaC08g44558 Brassica carinata HOM05D005006 ORTHO05D005903 3.1e-27 125.9 183 49.7
FAN18G2980 Fragaria x ananassa HOM05D005006 ORTHO05D005903 3.1e-27 125.9 188 47.3
RcHm_v2.0_Chr7g0195351 Rosa chinensis HOM05D005006 ORTHO05D005903 5.3e-27 125.2 173 49.1
Haze_08652 Corylus avellana HOM05D005006 ORTHO05D005903 1.2e-26 124.0 183 45.9
PGR031G0908 Punica granatum HOM05D005006 ORTHO05D005903 1.2e-26 124.0 188 45.2
Dinv37546 Davidia involucrata HOM05D005006 ORTHO05D005903 1.5e-26 123.6 179 48.6
Haze_08651 Corylus avellana HOM05D005006 ORTHO05D005903 2.6e-26 122.9 183 45.4
QL02p031286 Quercus lobata HOM05D005006 ORTHO05D005903 2.6e-26 122.9 182 46.7
CANSAT21G0143 Cannabis sativa HOM05D005006 ORTHO05D005903 3.4e-26 122.5 196 46.4
TWI81G0332 Tripterygium wilfordii HOM05D005006 ORTHO05D005903 3.4e-26 122.5 190 45.8
CARHR212760 Cardamine hirsuta HOM05D005006 ORTHO05D005903 7.6e-26 121.3 181 47.0
AT5G41810 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 1.7e-25 120.2 185 45.9
ClCG01G001990 Citrullus lanatus HOM05D005006 ORTHO05D005903 1.7e-25 120.2 165 48.5
Manes.01G045300 Manihot esculenta HOM05D005006 ORTHO05D005903 1.7e-25 120.2 192 42.7
Potri.001G093500 Populus trichocarpa HOM05D005006 ORTHO05D005903 1.7e-25 120.2 165 47.3
AL7G47430 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 2.2e-25 119.8 185 45.9
Solyc08g082090.1 Solanum lycopersicum HOM05D005006 ORTHO05D005903 2.9e-25 119.4 185 46.5
PGSC0003DMG400012296 Solanum tuberosum HOM05D005006 ORTHO05D005903 2.9e-25 119.4 185 46.5
Manes.02G011900 Manihot esculenta HOM05D005006 ORTHO05D005903 6.4e-25 118.2 173 46.2
Cfa012825 Carpinus fangiana HOM05D005006 ORTHO05D005903 1.1e-24 117.5 181 45.9
MD14G1122100 Malus domestica HOM05D005006 ORTHO05D005903 1.1e-24 117.5 194 44.3
Sopen08g030380 Solanum pennellii HOM05D005006 ORTHO05D005903 1.1e-24 117.5 172 48.3
Sed0010968 Sechium edule HOM05D005006 ORTHO05D005903 2.4e-24 116.3 184 45.1
Cc08_g15850 Coffea canephora HOM05D005006 ORTHO05D005903 4.2e-24 115.5 171 48.0
Eucgr.D01714 Eucalyptus grandis HOM05D005006 ORTHO05D005903 4.2e-24 115.5 196 46.9
COL.COLO4_21708 Corchorus olitorius HOM05D005006 ORTHO05D005903 5.5e-24 115.2 197 42.1
Duzib068G0822 Durio zibethinus HOM05D005006 ORTHO05D005903 1.6e-23 113.6 168 47.0
CsaV3_5G002120 Cucumis sativus L. HOM05D005006 ORTHO05D005903 2.1e-23 113.2 168 47.0
Duzib084G0720 Durio zibethinus HOM05D005006 ORTHO05D005903 4.6e-23 112.1 170 45.3
THA.LOC104809339 Tarenaya hassleriana HOM05D005006 ORTHO05D005903 1.3e-22 110.5 188 43.6
Thecc.03G294000 Theobroma cacao HOM05D005006 ORTHO05D005903 1.8e-22 110.2 168 45.8
Carub.0007s3356 Capsella rubella HOM05D005006 ORTHO05D005903 2.3e-22 109.8 192 42.7
FAN04G1712 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.1e-22 108.6 155 46.5
FAN04G3134 Fragaria x ananassa HOM05D005006 ORTHO05D005903 5.1e-22 108.6 155 46.5
Oeu061095.1 Olea europaea HOM05D005006 ORTHO05D005903 5.1e-22 108.6 184 42.9
Gohir.A08G085100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 6.7e-22 108.2 166 45.8
Atru.chr9.2028 Acer truncatum HOM05D005006 ORTHO05D005903 8.7e-22 107.8 173 43.4
Atru.chr9.2036 Acer truncatum HOM05D005006 ORTHO05D005903 8.7e-22 107.8 173 43.4
MELO3C005742.2 Cucumis melo HOM05D005006 ORTHO05D005903 1.5e-21 107.1 166 45.2
Prupe.5G116000 Prunus persica HOM05D005006 ORTHO05D005903 1.5e-21 107.1 200 43.5
Gohir.D08G132000 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.9e-21 106.7 166 44.6
Gorai.004G134900 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.9e-21 106.7 166 44.6
Aqoxy5G04131 Aquilegia oxysepala HOM05D005006 ORTHO05D005903 4.3e-21 105.5 192 42.2
MD06G1103200 Malus domestica HOM05D005006 ORTHO05D005903 4.3e-21 105.5 192 42.7
HanXRQChr03g0085171 Helianthus annuus HOM05D005006 ORTHO05D005903 5.6e-21 105.1 185 43.2
Lsat_1_v5_gn_6_11781 Lactuca sativa HOM05D005006 ORTHO05D005903 7.4e-21 104.8 188 40.4
TAR629G3139 Trochodendron aralioides HOM05D005006 ORTHO05D005903 7.4e-21 104.8 184 44.0
Ciclev10022492m.g Citrus clementina HOM05D005006 ORTHO05D005903 2.8e-20 102.8 173 45.1
Sc22g0005120 Simmondsia chinensis HOM05D005006 ORTHO05D005903 2.8e-20 102.8 163 42.9
Atru.chr2.764 Acer truncatum HOM05D005006 ORTHO05D005903 6.2e-20 101.7 175 41.7
Sed0013874 Sechium edule HOM05D005006 ORTHO05D005903 1.1e-19 100.9 185 41.1
Nitab4.5_0007099g0020 Nicotiana tabacum HOM05D005006 ORTHO05D005903 1.8e-19 100.1 171 41.5
SGA_v2.0_scaffold111G31421 Striga asiatica HOM05D005006 ORTHO05D005903 1.8e-19 100.1 181 42.5
AUR62010816 Chenopodium quinoa HOM05D005006 ORTHO05D005903 4.0e-19 99.0 190 42.1
Sabra01G0069400 Salix brachista HOM05D000089 ORTHO05D003403 4.0e-19 99.0 165 41.8
Lsat_1_v5_gn_6_85661 Lactuca sativa HOM05D005006 ORTHO05D005903 5.3e-19 98.6 175 41.7
Phvul.002G163200 Phaseolus vulgaris HOM05D005006 ORTHO05D005903 9.0e-19 97.8 90 58.9
Actinidia01391 Actinidia chinensis HOM05D005006 ORTHO05D005903 1.2e-18 97.4 188 42.0
Cpa.g.sc775.1 Carica papaya HOM05D005006 ORTHO05D005903 1.2e-18 97.4 171 41.5
Aa31LG9G320 Aethionema arabicum HOM05D005006 ORTHO05D005903 1.5e-18 97.1 164 43.3
MELO3C016304.2 Cucumis melo HOM05D005006 ORTHO05D005903 2.0e-18 96.7 189 40.7
ClCG07G014930 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.5e-18 95.5 193 38.9
ClCG10G009270 Citrullus lanatus HOM05D005006 ORTHO05D005903 4.5e-18 95.5 193 38.9
Thhalv10023644m.g Eutrema salsugineum HOM05D005006 ORTHO05D005903 4.5e-18 95.5 184 37.5
CSS0022093 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 5.8e-18 95.1 196 37.8
CSS0014692 Camellia sinensis var. sinensis HOM05D005006 ORTHO05D005903 7.6e-18 94.7 194 38.7
Rhsim07G0083400 Rhododendron simsii HOM05D005006 ORTHO05D005903 7.6e-18 94.7 181 42.0
DCAR_027715 Daucus carota HOM05D005006 ORTHO05D005903 1.3e-17 94.0 192 41.7
Carub.0002s0046 Capsella rubella HOM05D005006 ORTHO05D005903 1.7e-17 93.6 190 37.9
Hma1.2p1_0359F.1_g135340 Hydrangea macrophylla HOM05D005006 ORTHO05D005903 1.7e-17 93.6 197 40.1
BcaC04g22629 Brassica carinata HOM05D005006 ORTHO05D005903 2.2e-17 93.2 181 37.0
Sed0017945 Sechium edule HOM05D005006 ORTHO05D005903 6.5e-17 91.7 176 40.3
AL2G10550 Arabidopsis lyrata HOM05D005006 ORTHO05D005903 8.4e-17 91.3 182 35.7
MSTRG.13880 Avicennia marina HOM05D005006 ORTHO05D005903 8.4e-17 91.3 185 40.5
ECA240G3705 Erigeron canadensis HOM05D005006 ORTHO05D005903 8.4e-17 91.3 188 39.9
TPR.G3451 Trifolium pratense HOM05D006501 ORTHO05D008241 8.4e-17 91.3 133 43.6
C09p17190 Brassica napus HOM05D005006 ORTHO05D005903 1.9e-16 90.1 180 36.1
BolC9t54617H Brassica oleracea HOM05D005006 ORTHO05D005903 1.9e-16 90.1 180 36.1
HanXRQChr07g0191041 Helianthus annuus HOM05D005006 ORTHO05D005903 2.5e-16 89.7 190 38.4
MBI07_g24340_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 2.5e-16 89.7 183 37.2
CsaV3_4G006460 Cucumis sativus L. HOM05D005006 ORTHO05D005903 1.6e-15 87.0 182 37.9
AT1G64340 Arabidopsis thaliana HOM05D005006 ORTHO05D005903 2.7e-15 86.3 168 36.3
A09p14260 Brassica napus HOM05D005006 ORTHO05D005903 6.0e-15 85.1 184 37.5
Lalb_Chr05g0211621 Lupinus albus HOM05D005006 ORTHO05D005903 6.0e-15 85.1 104 52.9
PGR042G1559 Punica granatum HOM05D005006 ORTHO05D005903 1.0e-14 84.3 178 38.8
BcaB07g31512 Brassica carinata HOM05D005006 ORTHO05D005903 1.8e-14 83.6 180 35.0
Nn1g01823 Nelumbo nucifera HOM05D005006 ORTHO05D005903 1.8e-14 83.6 182 38.5
BraA09t37075Z Brassica rapa HOM05D005006 ORTHO05D005903 2.3e-14 83.2 183 37.7
Sp2g00420 Schrenkiella parvula HOM05D005006 ORTHO05D005903 2.3e-14 83.2 183 34.4
Peaxi162Scf00117g00128 Petunia axillaris HOM05D005006 ORTHO05D005903 6.7e-14 81.6 173 38.2
ECA233G6185 Erigeron canadensis HOM05D005006 ORTHO05D005903 8.7e-14 81.3 204 34.3
Peaxi162Scf00074g01119 Petunia axillaris HOM05D005006 ORTHO05D005903 4.3e-13 79.0 158 38.6
Rhsim02G0241500 Rhododendron simsii HOM05D005006 ORTHO05D005903 6.3e-12 75.1 178 37.1
Gohir.A11G024100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.8e-11 73.6 131 42.0
MBI06_g32753_MAGBIO Magnolia biondii HOM05D005006 ORTHO05D005903 2.6e-10 69.7 180 36.7
Sc01g0010170 Simmondsia chinensis HOM05D005006 ORTHO05D005903 4.5e-10 68.9 190 35.3
Dinv38852 Davidia involucrata HOM05D005006 ORTHO05D005903 1.0e-09 67.8 113 43.4
TAR636G0983 Trochodendron aralioides HOM05D000337 ORTHO05D000297 2.2e-09 66.6 70 61.4
Gohir.D12G236200 Gossypium hirsutum HOM05D005006 ORTHO05D005903 1.4e-08 63.9 110 41.8
Gorai.008G253000 Gossypium raimondii HOM05D005006 ORTHO05D005903 1.4e-08 63.9 110 41.8
Manes.02G012001 Manihot esculenta HOM05D005006 ORTHO05D005903 2.5e-08 63.2 173 31.8
Gohir.A12G235100 Gossypium hirsutum HOM05D005006 ORTHO05D005903 5.5e-08 62.0 115 40.9
Nn3g19068 Nelumbo nucifera HOM05D005006 ORTHO05D005903 7.2e-08 61.6 107 43.0
ClCG11G005390 Citrullus lanatus HOM05D000189 ORTHO05D006628 9.4e-08 61.2 150 36.0
PSO724G1125 Papaver somniferum HOM05D005006 ORTHO05D005903 2.1e-07 60.1 188 27.7
PSO724G0798 Papaver somniferum HOM05D005006 ORTHO05D005903 2.7e-07 59.7 188 27.7
ClCG01G011510 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.0e-06 56.2 101 39.6
ClCG05G010200 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.0e-06 56.2 101 39.6
ClCG07G009600 Citrullus lanatus HOM05D005006 ORTHO05D005903 3.0e-06 56.2 101 39.6
Zm00001eb382950 Zea mays HOM05D005006 ORTHO05D005903 8.8e-06 54.7 166 31.9


User provided reference genes

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