Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G290904 Phaseolus vulgaris HOM05D003247 ORTHO05D003974 4.7e-288 993.8 496 100.0
Glyma.05G209200 Glycine max HOM05D003247 ORTHO05D003974 3.0e-266 921.4 496 91.7
Glyma.08G015900 Glycine max HOM05D003247 ORTHO05D003974 2.8e-264 914.8 496 91.1
arahy.Tifrunner.gnm1.ann1.5U7DNF Arachis hypogaea HOM05D003247 ORTHO05D003974 9.0e-255 883.2 496 86.9
Ca_17516_v3 Cicer arietinum L. HOM05D003247 ORTHO05D003974 1.2e-254 882.9 496 86.5
Lj4g0006056 Lotus japonicus HOM05D003247 ORTHO05D003974 1.5e-254 882.5 496 88.7
Medtr8g098525 Medicago truncatula HOM05D003247 ORTHO05D003974 2.0e-254 882.1 496 87.5
Psat7g031800 Pisum sativum HOM05D003247 ORTHO05D003974 2.0e-254 882.1 496 87.1
TPR.G12767 Trifolium pratense HOM05D003247 ORTHO05D003974 3.4e-254 881.3 496 86.9
arahy.Tifrunner.gnm1.ann1.1Z7M3S Arachis hypogaea HOM05D003247 ORTHO05D003974 1.1e-252 876.3 496 86.3
Lalb_Chr05g0222801 Lupinus albus HOM05D003247 ORTHO05D003974 1.4e-252 875.9 496 86.5
VMungo0251G1424 Vigna mungo HOM05D003247 ORTHO05D003974 3.2e-252 874.8 496 87.3
Lalb_Chr09g0332971 Lupinus albus HOM05D003247 ORTHO05D003974 4.6e-251 870.9 496 86.9
CiPaw.11G133400 Carya illinoinensis HOM05D003247 ORTHO05D003974 1.2e-246 856.3 496 84.5
Gohir.A03G018700 Gossypium hirsutum HOM05D003247 ORTHO05D003974 9.3e-244 846.7 494 83.8
Thecc.03G281500 Theobroma cacao HOM05D003247 ORTHO05D003974 3.5e-243 844.7 496 83.1
Gohir.D03G150200 Gossypium hirsutum HOM05D003247 ORTHO05D003974 6.7e-242 840.5 494 83.6
Gorai.003G157400 Gossypium raimondii HOM05D003247 ORTHO05D003974 1.9e-241 839.0 495 83.8
QL12p032548 Quercus lobata HOM05D003247 ORTHO05D003974 2.5e-241 838.6 495 84.0
Cpa.g.sc214.14 Carica papaya HOM05D003247 ORTHO05D003974 4.3e-241 837.8 496 82.9
Duzib205G1189 Durio zibethinus HOM05D003247 ORTHO05D003974 1.6e-240 835.9 496 82.7
MD14G1107600 Malus domestica HOM05D003247 ORTHO05D003974 2.1e-240 835.5 496 82.3
Actinidia01994 Actinidia chinensis HOM05D003247 ORTHO05D003974 4.8e-240 834.3 496 81.9
Ciclev10018808m.g Citrus clementina HOM05D003247 ORTHO05D003974 1.8e-239 832.4 496 82.3
Dinv37625 Davidia involucrata HOM05D003247 ORTHO05D003974 3.1e-239 831.6 496 82.1
Manes.02G020950 Manihot esculenta HOM05D003247 ORTHO05D003974 1.2e-238 829.7 496 82.5
Potri.003G129500 Populus trichocarpa HOM05D003247 ORTHO05D003974 1.2e-238 829.7 496 81.9
Sabra01G0077100 Salix brachista HOM05D003247 ORTHO05D003974 1.5e-238 829.3 496 81.2
TWI60G0271 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 5.8e-238 827.4 496 81.9
FvH4_5g02730 Fragaria vesca HOM05D003247 ORTHO05D003974 6.5e-237 823.9 496 81.9
GSVIVG01019731001 Vitis vinifera HOM05D003247 ORTHO05D003974 8.4e-237 823.5 496 81.5
PGR031G0275 Punica granatum HOM05D003247 ORTHO05D003974 1.4e-236 822.8 496 80.6
CANSAT35G0036 Cannabis sativa HOM05D003247 ORTHO05D003974 2.5e-236 822.0 496 81.5
TAR636G0433 Trochodendron aralioides HOM05D003247 ORTHO05D003974 2.5e-236 822.0 496 80.8
Duzib084G1173 Durio zibethinus HOM05D003247 ORTHO05D003974 4.2e-236 821.2 496 81.7
Hund14825 Selenicereus undatus HOM05D003247 ORTHO05D003974 4.2e-236 821.2 496 80.6
FAN18G0212 Fragaria x ananassa HOM05D003247 ORTHO05D003974 7.1e-236 820.5 496 81.5
MD06G1086400 Malus domestica HOM05D003247 ORTHO05D003974 9.3e-236 820.1 496 80.6
FAN04G2168 Fragaria x ananassa HOM05D003247 ORTHO05D003974 1.6e-235 819.3 496 81.5
Eucgr.D01833 Eucalyptus grandis HOM05D003247 ORTHO05D003974 3.5e-235 818.1 496 80.0
FAN08G0767 Fragaria x ananassa HOM05D003247 ORTHO05D003974 4.6e-235 817.8 496 81.2
FAN13G0605 Fragaria x ananassa HOM05D003247 ORTHO05D003974 7.9e-235 817.0 496 81.5
Haze_08801 Corylus avellana HOM05D003247 ORTHO05D003974 2.3e-234 815.5 484 83.3
Dinv38927 Davidia involucrata HOM05D003247 ORTHO05D003974 3.0e-234 815.1 496 80.8
RcHm_v2.0_Chr7g0197201 Rosa chinensis HOM05D003247 ORTHO05D003974 1.1e-233 813.1 496 81.5
Rhsim02G0233100 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.5e-233 812.8 496 79.6
RhsimUnG0160000 Rhododendron simsii HOM05D003247 ORTHO05D003974 1.5e-233 812.8 496 79.6
CSS0019820 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 3.3e-233 811.6 496 79.6
CSS0047123 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 3.3e-233 811.6 496 79.6
TPR.G28250 Trifolium pratense HOM05D003247 ORTHO05D003974 3.3e-233 811.6 501 81.2
Nn1g01570 Nelumbo nucifera HOM05D003247 ORTHO05D003974 5.7e-233 810.8 496 80.4
Nn6g33377 Nelumbo nucifera HOM05D003247 ORTHO05D003974 5.7e-233 810.8 496 80.0
DCAR_008373 Daucus carota HOM05D003247 ORTHO05D003974 2.8e-232 808.5 494 77.9
Migut.A00742 Erythranthe guttata HOM05D003247 ORTHO05D003974 1.4e-231 806.2 496 78.8
vmacro11386 Vaccinium macrocarpon HOM05D003247 ORTHO05D003974 1.8e-231 805.8 505 78.6
Sc01g0005540 Simmondsia chinensis HOM05D003247 ORTHO05D003974 4.1e-231 804.7 496 80.2
Lalb_Chr05g0224671 Lupinus albus HOM05D003247 ORTHO05D003974 5.3e-231 804.3 499 80.2
Aqoxy5G04015 Aquilegia oxysepala HOM05D003247 ORTHO05D003974 6.9e-231 803.9 496 79.2
PSO832G0897 Papaver somniferum HOM05D003247 ORTHO05D003974 1.2e-230 803.1 496 78.8
MSTRG.1858 Avicennia marina HOM05D003247 ORTHO05D003974 4.5e-230 801.2 496 78.6
THA.LOC104809378 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 5.9e-230 800.8 496 80.4
ECA240G1820 Erigeron canadensis HOM05D003247 ORTHO05D003974 1.3e-229 799.7 496 78.6
HanXRQChr13g0416311 Helianthus annuus HOM05D003247 ORTHO05D003974 3.8e-229 798.1 496 78.6
Cc08_g14910 Coffea canephora HOM05D003247 ORTHO05D003974 5.0e-229 797.7 496 78.6
PSO063G5587 Papaver somniferum HOM05D003247 ORTHO05D003974 5.0e-229 797.7 496 78.8
Prupe.5G103000 Prunus persica HOM05D003247 ORTHO05D003974 1.1e-228 796.6 472 82.4
CDE05G0892 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 1.4e-228 796.2 496 78.2
AUR62010702 Chenopodium quinoa HOM05D003247 ORTHO05D003974 3.2e-228 795.0 496 77.6
Migut.E01080 Erythranthe guttata HOM05D003247 ORTHO05D003974 3.2e-228 795.0 494 77.9
SalBow1G5596 Salvia bowleyana HOM05D003247 ORTHO05D003974 3.2e-228 795.0 496 78.2
HanXRQChr03g0086871 Helianthus annuus HOM05D003247 ORTHO05D003974 5.5e-228 794.3 496 77.6
MBI18_g02832_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 1.2e-227 793.1 494 78.5
MBI17_g42619_MAGBIO Magnolia biondii HOM05D003247 ORTHO05D003974 2.7e-227 792.0 496 78.4
Peaxi162Scf00119g00138 Petunia axillaris HOM05D003247 ORTHO05D003974 1.0e-226 790.0 496 78.8
AL2G11370 Arabidopsis lyrata HOM05D003247 ORTHO05D003974 1.3e-226 789.6 496 78.4
AT1G63770 Arabidopsis thaliana HOM05D003247 ORTHO05D003974 2.3e-226 788.9 496 78.2
BcaB07g31551 Brassica carinata HOM05D003247 ORTHO05D003974 2.3e-226 788.9 496 78.6
HPP92_025967 Vanilla planifolia HOM05D003247 ORTHO05D003974 3.0e-226 788.5 496 76.8
ATR0680G039 Amborella trichopoda HOM05D003247 ORTHO05D003974 3.9e-226 788.1 496 76.6
Thhalv10023233m.g Eutrema salsugineum HOM05D003247 ORTHO05D003974 3.9e-226 788.1 496 78.2
Nitab4.5_0002975g0050 Nicotiana tabacum HOM05D003247 ORTHO05D003974 3.9e-226 788.1 496 78.8
Carub.0002s0107 Capsella rubella HOM05D003247 ORTHO05D003974 5.1e-226 787.7 496 78.2
BcaC02g10366 Brassica carinata HOM05D003247 ORTHO05D003974 6.7e-226 787.3 496 78.2
CARHR047420 Cardamine hirsuta HOM05D003247 ORTHO05D003974 8.7e-226 786.9 496 78.2
Sopen08g029560 Solanum pennellii HOM05D003247 ORTHO05D003974 8.7e-226 786.9 496 78.4
THA.LOC104817937 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 1.5e-225 786.2 502 77.7
Actinidia14574 Actinidia chinensis HOM05D003247 ORTHO05D003974 3.3e-225 785.0 469 80.6
PSO210G5648 Papaver somniferum HOM05D003247 ORTHO05D003974 7.4e-225 783.9 496 76.4
Sabra01G0077200 Salix brachista HOM05D003247 ORTHO05D003974 9.7e-225 783.5 496 78.4
A06p04610 Brassica napus HOM05D003247 ORTHO05D003974 2.2e-224 782.3 507 76.9
BraA06t23665Z Brassica rapa HOM05D003247 ORTHO05D003974 2.2e-224 782.3 507 76.9
THA.LOC104815066 Tarenaya hassleriana HOM05D003247 ORTHO05D003974 3.7e-224 781.6 496 77.8
EL10Ac5g12795 Beta vulgaris HOM05D003247 ORTHO05D003974 6.3e-224 780.8 525 74.1
Lj8A219G33 Lonicera japonica HOM05D003247 ORTHO05D003974 6.3e-224 780.8 498 78.1
C04p29680 Brassica napus HOM05D003247 ORTHO05D003974 6.9e-223 777.3 511 75.9
CAN.G774.61 Capsicum annuum HOM05D003247 ORTHO05D003974 2.6e-222 775.4 496 77.2
Atru.chr9.2165 Acer truncatum HOM05D003247 ORTHO05D003974 1.0e-221 773.5 496 77.2
Lsat_1_v5_gn_6_86420 Lactuca sativa HOM05D003247 ORTHO05D003974 1.7e-221 772.7 494 76.3
Sed0003481 Sechium edule HOM05D003247 ORTHO05D003974 2.2e-221 772.3 496 76.2
BolC4t24494H Brassica oleracea HOM05D003247 ORTHO05D003974 2.9e-221 771.9 520 74.4
PSO210G5645 Papaver somniferum HOM05D003247 ORTHO05D003974 2.9e-221 771.9 496 76.0
CsaV3_5G002690 Cucumis sativus L. HOM05D003247 ORTHO05D003974 5.0e-221 771.2 497 76.7
Zm00001eb038870 Zea mays HOM05D003247 ORTHO05D003974 6.1e-219 764.2 494 75.7
Sed0014492 Sechium edule HOM05D003247 ORTHO05D003974 3.9e-218 761.5 496 74.8
Nitab4.5_0001615g0030 Nicotiana tabacum HOM05D003247 ORTHO05D003974 1.5e-217 759.6 470 79.4
unitig_0.g1141 Utricularia gibba HOM05D005096 ORTHO05D003974 4.1e-215 751.5 524 69.8
BraA06t25281Z Brassica rapa HOM05D003247 ORTHO05D003974 2.2e-213 745.7 496 75.4
Oeu011040.2 Olea europaea HOM05D003247 ORTHO05D003974 6.5e-213 744.2 595 65.9
AUR62017183 Chenopodium quinoa HOM05D003247 ORTHO05D003974 2.7e-211 738.8 496 73.8
Ah.02g110410 Amaranthus hybridus HOM05D003247 ORTHO05D003974 5.7e-209 731.1 496 72.8
unitig_61.g26270 Utricularia gibba HOM05D003247 ORTHO05D003974 4.5e-206 721.5 469 73.6
TWI81G0748 Tripterygium wilfordii HOM05D003247 ORTHO05D003974 3.8e-205 718.4 496 73.4
MELO3C005688.2 Cucumis melo HOM05D003247 ORTHO05D003974 2.5e-204 715.7 511 71.4
CSS0029032 Camellia sinensis var. sinensis HOM05D003247 ORTHO05D003974 6.7e-202 707.6 419 81.6
EL10Ac9g20777 Beta vulgaris HOM05D003247 ORTHO05D003974 3.7e-200 701.8 496 70.6
SGA_v2.0_scaffold173G39167 Striga asiatica HOM05D003247 ORTHO05D003974 1.1e-199 700.3 452 76.8
Aa31LG2G950 Aethionema arabicum HOM05D003247 ORTHO05D003974 7.0e-199 697.6 525 70.3
Sc01g0009690 Simmondsia chinensis HOM05D003247 ORTHO05D003974 4.4e-185 651.7 407 78.9
Pp3c26_1330 Physcomitrium patens HOM05D003247 ORTHO05D003974 2.8e-184 649.0 497 63.8
Lsat_1_v5_gn_6_86400 Lactuca sativa HOM05D003247 ORTHO05D003974 2.4e-183 646.0 494 66.0
AagrBONN_evm.TU.Sc2ySwM_228.2960 Anthoceros agrestis HOM05D003247 ORTHO05D003974 4.3e-180 635.2 494 63.0
Pp3c15_1150 Physcomitrium patens HOM05D003247 ORTHO05D003974 6.1e-179 631.3 497 62.8
Mapoly0042s0035 Marchantia polymorpha HOM05D003247 ORTHO05D003974 1.4e-178 630.2 496 62.7
A06p21950 Brassica napus HOM05D003247 ORTHO05D003974 1.8e-178 629.8 406 75.9
Gohir.D08G202250 Gossypium hirsutum HOM05D003247 ORTHO05D003974 3.7e-176 622.1 432 72.7
Pp3c9_1240 Physcomitrium patens HOM05D003247 ORTHO05D003974 8.3e-176 620.9 497 62.8
SMO119G0190 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 2.3e-173 612.8 499 61.5
SMO119G0357 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 3.0e-173 612.5 498 61.2
SMO119G0209 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 1.5e-172 610.1 498 61.2
SMO351G0363 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 5.6e-172 608.2 499 60.9
Gohir.A08G183600 Gossypium hirsutum HOM05D003247 ORTHO05D003974 7.3e-172 607.8 496 64.5
SHI07163 Sapria himalayana HOM05D003247 ORTHO05D003974 9.8e-169 597.4 406 72.7
BolC6t35397H Brassica oleracea HOM05D003247 ORTHO05D003974 1.0e-165 587.4 475 65.7
BcaC08g43016 Brassica carinata HOM05D003247 ORTHO05D003974 7.3e-164 581.3 501 62.1
C06p02710 Brassica napus HOM05D003247 ORTHO05D003974 7.3e-164 581.3 501 62.1
CBR_g951 Chara braunii HOM05D003247 ORTHO05D003974 9.2e-159 564.3 496 56.2
Potri.001G101975 Populus trichocarpa HOM05D003247 ORTHO05D003974 4.3e-156 555.4 342 78.7
CBR_g30015 Chara braunii HOM05D003247 ORTHO05D003974 3.6e-155 552.4 543 51.7
Lalb_Chr16g0390071 Lupinus albus HOM05D003247 ORTHO05D003974 1.4e-154 550.4 308 87.0
MCO16G652 Micromonas commoda HOM05D003247 ORTHO05D003974 7.1e-143 511.5 498 51.4
Gorai.004G213400 Gossypium raimondii HOM05D003247 ORTHO05D003974 4.9e-136 488.8 495 56.4
HanXRQChr03g0086881 Helianthus annuus HOM05D003247 ORTHO05D003974 1.9e-132 476.9 310 75.5
Potri.001G102126 Populus trichocarpa HOM05D003247 ORTHO05D003974 4.5e-129 465.7 299 80.3
Ah.12g051740 Amaranthus hybridus HOM05D003247 ORTHO05D003974 3.7e-123 446.0 284 75.7
TAR629G1189 Trochodendron aralioides HOM05D003247 ORTHO05D003974 4.8e-123 445.7 463 53.6
SMO169G0195 Selaginella moellendorffii HOM05D003247 ORTHO05D003974 2.6e-121 439.9 448 48.7
Cre17.g736650 Chlamydomonas reinhardtii HOM05D003247 ORTHO05D003974 2.5e-116 423.3 533 44.5
CDE08G1495 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 1.6e-115 420.6 277 73.3
PRCOL_00005594 Prasinoderma coloniale HOM05D003247 ORTHO05D003974 3.2e-103 379.8 512 42.6
Medtr8g098545 Medicago truncatula HOM05D003247 ORTHO05D003974 8.5e-96 355.1 279 69.2
Ah.12g051750 Amaranthus hybridus HOM05D003247 ORTHO05D003974 4.7e-94 349.4 213 79.8
MCO13G113 Micromonas commoda HOM05D003247 ORTHO05D003974 1.5e-79 301.2 533 37.3
Zm00001eb326750 Zea mays HOM05D003247 ORTHO05D003974 2.0e-68 264.2 161 76.4
Zm00001eb070300 Zea mays HOM05D003247 ORTHO05D003974 1.7e-64 251.1 147 81.0
Lalb_Chr16g0390081 Lupinus albus HOM05D003247 ORTHO05D003974 3.6e-62 243.4 145 82.8
Medtr8g098535 Medicago truncatula HOM05D003247 ORTHO05D003974 1.8e-61 241.1 135 82.2
Cre04.g213250 Chlamydomonas reinhardtii HOM05D003247 ORTHO05D003974 1.5e-52 211.5 381 37.5
Potri.001G102051 Populus trichocarpa HOM05D003247 ORTHO05D003974 9.5e-47 192.2 108 82.4
HanXRQChr07g0190431 Helianthus annuus HOM05D003247 ORTHO05D003974 5.8e-44 183.0 112 77.7
C07p00320 Brassica napus HOM05D003247 ORTHO05D032812 6.4e-43 179.5 159 57.2
CDE08G0631 Ceratophyllum demersum HOM05D003247 ORTHO05D003974 4.1e-42 176.8 108 77.8
COL.COLO4_00113 Corchorus olitorius HOM05D003247 ORTHO05D003974 1.4e-37 161.8 90 88.9
BcaC06g36754 Brassica carinata HOM05D003247 ORTHO05D032812 7.3e-31 139.4 95 67.4
SalBow1G0073 Salvia bowleyana HOM05D003247 ORTHO05D003974 6.9e-29 132.9 79 77.2
PSO149G0001 Papaver somniferum HOM05D003247 ORTHO05D003974 1.2e-25 122.1 61 91.8
BolC7t40481H Brassica oleracea HOM05D003247 ORTHO05D032812 3.0e-24 117.5 78 66.7
ClCG01G002580 Citrullus lanatus HOM05D003247 ORTHO05D003974 1.8e-21 108.2 51 94.1
CBR_g30016 Chara braunii HOM05D003247 ORTHO05D003974 2.5e-15 87.8 134 42.5
C07p00300 Brassica napus HOM05D003247 ORTHO05D042289 4.3e-15 87.0 105 49.5
BolC7t40479H Brassica oleracea HOM05D003247 ORTHO05D042289 9.6e-15 85.9 105 48.6
Lsat_1_v5_gn_2_26081 Lactuca sativa HOM05D003247 ORTHO05D002149 9.9e-12 75.9 38 84.2
Lsat_1_v5_gn_5_94840 Lactuca sativa HOM05D002109 ORTHO05D002149 2.2e-11 74.7 38 84.2
ECA240G2658 Erigeron canadensis HOM05D000167 ORTHO05D000994 1.5e-07 62.0 31 87.1


User provided reference genes

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