Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 3.0e-298 1027.7 514 100.0
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 4.6e-230 801.2 515 80.6
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 1.1e-165 587.4 543 58.2
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 1.4e-165 587.0 534 58.1
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 8.9e-165 584.3 534 58.4
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 3.3e-159 565.8 523 58.9
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 4.3e-159 565.5 517 57.6
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 4.3e-159 565.5 530 57.4
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 2.8e-158 562.8 539 55.7
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.5e-156 557.0 534 55.6
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 7.6e-156 554.7 521 57.0
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 2.9e-155 552.7 536 54.1
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 6.4e-155 551.6 526 56.3
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 2.4e-154 549.7 535 57.0
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 7.1e-154 548.1 518 56.8
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 6.0e-153 545.0 536 53.9
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 6.0e-153 545.0 517 55.5
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 1.0e-152 544.3 562 53.4
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 1.3e-152 543.9 555 54.2
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 1.3e-152 543.9 538 53.9
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 3.9e-152 542.3 519 56.8
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 1.9e-151 540.0 522 55.9
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 4.8e-150 535.4 513 54.8
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.1e-149 532.7 515 54.2
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 4.0e-149 532.3 521 54.7
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 5.3e-149 531.9 524 55.2
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 1.2e-148 530.8 528 53.8
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 1.5e-148 530.4 532 54.1
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 1.5e-148 530.4 557 51.3
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 3.4e-148 529.3 530 53.8
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 3.4e-148 529.3 524 53.6
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 5.8e-148 528.5 528 54.9
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 9.9e-148 527.7 510 54.7
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 3.8e-147 525.8 524 54.2
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 6.4e-147 525.0 528 53.2
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 3.2e-146 522.7 534 52.4
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 4.2e-146 522.3 508 54.5
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 1.2e-145 520.8 506 54.9
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 2.7e-145 519.6 536 52.4
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 2.3e-144 516.5 530 52.5
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 2.3e-144 516.5 547 51.7
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 2.3e-144 516.5 526 53.6
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 3.0e-144 516.2 487 55.9
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 3.0e-144 516.2 521 54.3
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 3.9e-144 515.8 536 52.8
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.1e-143 514.2 516 52.9
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 1.1e-143 514.2 521 53.9
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 4.3e-143 512.3 521 53.9
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 4.3e-143 512.3 521 55.1
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 5.6e-143 511.9 519 52.4
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 9.6e-143 511.1 532 53.2
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 1.3e-142 510.8 513 51.9
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 2.1e-142 510.0 560 50.7
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 2.8e-142 509.6 515 52.2
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 2.8e-142 509.6 542 53.3
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 6.2e-142 508.4 517 52.6
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.4e-141 507.3 533 50.8
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 5.3e-141 505.4 516 52.3
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 6.9e-141 505.0 546 51.5
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 6.9e-141 505.0 607 48.4
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 6.9e-141 505.0 522 53.1
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 1.2e-140 504.2 447 59.3
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.2e-140 504.2 525 52.0
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 2.6e-140 503.1 512 53.1
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 3.4e-140 502.7 575 48.9
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 5.8e-140 501.9 581 48.5
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 1.3e-139 500.7 566 49.1
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 1.7e-139 500.4 508 52.8
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 6.4e-139 498.4 512 52.0
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 8.4e-139 498.0 519 51.6
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.4e-138 496.5 566 48.6
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 2.4e-138 496.5 501 53.3
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 4.2e-138 495.7 570 49.1
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 5.4e-138 495.4 518 51.2
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 5.4e-138 495.4 566 49.1
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 1.6e-137 493.8 557 48.7
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 2.1e-137 493.4 539 50.8
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 2.1e-137 493.4 527 52.6
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 2.7e-137 493.0 544 50.9
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 2.7e-137 493.0 473 55.8
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 4.6e-137 492.3 517 51.1
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 7.9e-137 491.5 562 48.0
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 1.8e-136 490.3 556 51.3
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.1e-135 487.6 541 48.6
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 1.9e-135 486.9 540 49.3
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 1.8e-133 480.3 521 49.3
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 3.1e-133 479.6 522 49.6
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 1.2e-132 477.6 520 49.4
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 1.5e-132 477.2 529 48.8
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 4.5e-132 475.7 525 47.4
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 5.8e-132 475.3 508 49.4
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 2.2e-131 473.4 525 49.7
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 2.5e-130 469.9 397 58.2
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 1.6e-129 467.2 600 47.0
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 1.6e-129 467.2 520 48.5
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 4.6e-129 465.7 370 60.0
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 6.0e-129 465.3 370 60.0
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 1.0e-128 464.5 370 59.7
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 3.0e-128 463.0 402 56.7
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 9.6e-127 458.0 552 46.4
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 1.1e-125 454.5 629 42.8
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 1.8e-125 453.8 377 59.9
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 2.4e-125 453.4 535 47.1
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 7.6e-124 448.4 300 69.0
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 9.3e-122 441.4 536 46.5
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 2.1e-121 440.3 565 45.5
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 3.5e-121 439.5 563 45.8
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 6.1e-121 438.7 495 46.7
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 6.7e-120 435.3 531 45.6
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 9.0e-117 424.9 474 48.9
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 3.4e-116 422.9 532 48.1
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 5.5e-114 415.6 524 45.8
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 9.4e-114 414.8 514 43.8
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 2.5e-111 406.8 342 56.1
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 1.7e-110 404.1 514 42.8
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 6.9e-109 398.7 508 44.5
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 2.3e-104 383.6 383 51.7
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 6.7e-104 382.1 352 50.0
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 3.1e-101 373.2 526 43.9
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 3.1e-101 373.2 472 44.9
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 5.3e-101 372.5 326 55.2
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 8.5e-99 365.2 491 45.0
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.5e-98 364.4 283 59.4
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 9.4e-98 361.7 475 45.7
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.6e-97 360.9 414 46.6
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 6.1e-97 359.0 371 48.8
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 1.8e-96 357.5 348 50.0
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 2.3e-96 357.1 371 48.5
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 2.3e-96 357.1 405 46.7
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 2.3e-96 357.1 405 46.7
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 3.0e-96 356.7 404 46.3
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 3.0e-96 356.7 434 48.4
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 8.8e-96 355.1 378 47.9
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 8.8e-96 355.1 372 48.7
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.1e-95 354.8 388 47.2
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 1.1e-95 354.8 405 46.7
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 1.1e-95 354.8 405 46.7
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 3.3e-95 353.2 365 49.6
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 7.7e-92 342.0 372 48.4
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 7.7e-92 342.0 372 48.4
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.7e-91 340.9 302 53.3
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 2.2e-91 340.5 526 37.8
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 3.8e-91 339.7 404 46.0
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 5.0e-91 339.3 374 47.9
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 5.0e-91 339.3 374 47.9
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 1.1e-85 321.6 228 61.0
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 5.0e-83 312.8 208 68.8
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.1e-81 307.4 208 67.8
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 1.3e-78 298.1 361 47.6
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 1.1e-77 295.0 300 49.7
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 3.1e-77 293.5 459 41.6
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 3.5e-76 290.0 281 53.4
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 2.9e-54 217.2 166 62.0
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 1.1e-53 215.3 534 31.6
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 8.1e-49 199.1 130 69.2
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 3.2e-45 187.2 339 38.9
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 8.6e-43 179.1 507 32.1
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 9.6e-42 175.6 289 42.2
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 8.4e-38 162.5 287 41.5
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 1.6e-36 158.3 132 56.8
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 1.0e-35 155.6 283 33.9
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 5.1e-35 153.3 104 65.4
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 4.8e-33 146.7 244 43.9
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 5.3e-32 143.3 83 77.1
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 1.0e-27 129.0 111 55.0
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 6.6e-27 126.3 121 52.9
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 1.3e-25 122.1 67 82.1
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 2.4e-24 117.9 65 83.1
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 6.9e-24 116.3 81 66.7
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 8.1e-17 92.8 96 45.8
CDE02G2184 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 5.5e-13 80.1 220 35.5
Os03g0851600 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 2.1e-09 68.2 210 31.0


User provided reference genes

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