Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G278500 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 3.6e-38 161.0 75 100.0
Medtr8g095375 Medicago truncatula HOM05D001231 ORTHO05D001012 3.3e-20 101.3 75 61.3
Phvul.002G278700 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 4.8e-19 97.4 75 60.0
Medtr8g095370 Medicago truncatula HOM05D001231 ORTHO05D001012 6.3e-19 97.1 75 58.7
Duzib268G0537 Durio zibethinus HOM05D001231 ORTHO05D001012 3.2e-15 84.7 75 48.0
Lalb_Chr12g0202761 Lupinus albus HOM05D001231 ORTHO05D001012 3.2e-15 84.7 77 51.9
Psat7g040440 Pisum sativum HOM05D001231 ORTHO05D001012 9.4e-15 83.2 70 55.7
QL10p038692 Quercus lobata HOM05D001231 ORTHO05D001012 1.2e-14 82.8 74 48.6
Lj4g0007075 Lotus japonicus HOM05D001231 ORTHO05D001012 1.6e-14 82.4 75 52.0
TPR.G12848 Trifolium pratense HOM05D001231 ORTHO05D001012 1.6e-14 82.4 83 48.2
Duzib268G0639 Durio zibethinus HOM05D001231 ORTHO05D001012 2.7e-14 81.6 75 48.0
Glyma.08G005300 Glycine max HOM05D001231 ORTHO05D001012 2.7e-14 81.6 85 48.2
Psat7g041040 Pisum sativum HOM05D001231 ORTHO05D001012 1.4e-13 79.3 75 49.3
Thecc.04G177500 Theobroma cacao HOM05D001231 ORTHO05D001012 1.4e-13 79.3 75 45.3
Glyma.05G198000 Glycine max HOM05D001231 ORTHO05D001012 3.0e-13 78.2 75 50.7
Cfa002248 Carpinus fangiana HOM05D001231 ORTHO05D001012 8.8e-13 76.6 75 45.3
Gohir.D09G204900 Gossypium hirsutum HOM05D001231 ORTHO05D001012 1.5e-12 75.9 75 44.0
Gorai.006G228900 Gossypium raimondii HOM05D001231 ORTHO05D001012 1.5e-12 75.9 75 44.0
COL.COLO4_16210 Corchorus olitorius HOM05D001231 ORTHO05D001012 2.0e-12 75.5 73 45.2
Gohir.A09G211400 Gossypium hirsutum HOM05D001231 ORTHO05D001012 2.0e-12 75.5 75 44.0
Phvul.002G278400 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 2.0e-12 75.5 75 52.0
CiPaw.04G178300 Carya illinoinensis HOM05D001231 ORTHO05D001012 5.7e-12 73.9 75 45.3
RcHm_v2.0_Chr7g0231101 Rosa chinensis HOM05D001231 ORTHO05D001012 5.7e-12 73.9 75 46.7
Peaxi162Scf00072g01012 Petunia axillaris HOM05D001231 ORTHO05D001012 9.7e-12 73.2 77 44.2
Solyc11g006950.3 Solanum lycopersicum HOM05D001231 ORTHO05D001012 9.7e-12 73.2 75 45.3
Sopen11g002870 Solanum pennellii HOM05D001231 ORTHO05D001012 9.7e-12 73.2 75 45.3
Ca_17033_v3 Cicer arietinum L. HOM05D001231 ORTHO05D001012 2.8e-11 71.6 76 43.4
COL.COLO4_16172 Corchorus olitorius HOM05D001231 ORTHO05D001012 2.8e-11 71.6 75 40.0
PGR102G0532 Punica granatum HOM05D001231 ORTHO05D001012 2.8e-11 71.6 73 42.5
CAN.G186.35 Capsicum annuum HOM05D001231 ORTHO05D001012 3.7e-11 71.2 76 42.1
MD00G1135500 Malus domestica HOM05D001231 ORTHO05D001012 3.7e-11 71.2 76 44.7
Hund09739 Selenicereus undatus HOM05D001231 ORTHO05D001012 4.8e-11 70.9 78 47.4
TWI75G0548 Tripterygium wilfordii HOM05D001231 ORTHO05D001012 4.8e-11 70.9 73 41.1
CiPaw.04G178400 Carya illinoinensis HOM05D001231 ORTHO05D001012 8.3e-11 70.1 76 43.4
Gohir.D04G040300 Gossypium hirsutum HOM05D001231 ORTHO05D001012 8.3e-11 70.1 73 43.8
Gorai.012G045400 Gossypium raimondii HOM05D001231 ORTHO05D001012 8.3e-11 70.1 73 43.8
Lalb_Chr08g0237751 Lupinus albus HOM05D001231 ORTHO05D001012 8.3e-11 70.1 75 44.0
Peaxi162Scf00120g01114 Petunia axillaris HOM05D001231 ORTHO05D001012 8.3e-11 70.1 77 40.3
Eucgr.F03380 Eucalyptus grandis HOM05D001231 ORTHO05D001012 1.1e-10 69.7 75 41.3
Gohir.A05G375500 Gossypium hirsutum HOM05D001231 ORTHO05D001012 1.4e-10 69.3 73 42.5
Potri.004G138100 Populus trichocarpa HOM05D001231 ORTHO05D001012 1.8e-10 68.9 75 44.0
PGSC0003DMG400032549 Solanum tuberosum HOM05D001231 ORTHO05D001012 2.4e-10 68.6 77 40.3
arahy.Tifrunner.gnm1.ann1.X2H08Z Arachis hypogaea HOM05D001231 ORTHO05D001012 3.1e-10 68.2 77 42.9
VMungo0251G2207 Vigna mungo HOM05D001231 ORTHO05D001012 3.1e-10 68.2 75 42.7
Phvul.002G278600 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 4.1e-10 67.8 73 39.7
Phvul.009G158101 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 4.1e-10 67.8 75 40.0
A02p42920 Brassica napus HOM05D001231 ORTHO05D001012 5.3e-10 67.4 75 44.0
C02p62860 Brassica napus HOM05D001231 ORTHO05D001012 5.3e-10 67.4 75 44.0
MD16G1009100 Malus domestica HOM05D001231 ORTHO05D001012 5.3e-10 67.4 68 45.6
Manes.07G074400 Manihot esculenta HOM05D001231 ORTHO05D001012 5.3e-10 67.4 75 40.0
Medtr3g097420 Medicago truncatula HOM05D001231 ORTHO05D001012 7.0e-10 67.0 75 40.0
Sopen11g002190 Solanum pennellii HOM05D001231 ORTHO05D001012 7.0e-10 67.0 77 39.0
Thecc.04G141100 Theobroma cacao HOM05D001231 ORTHO05D001012 7.0e-10 67.0 73 39.7
MD02G1301100 Malus domestica HOM05D001231 ORTHO05D001012 9.1e-10 66.6 68 45.6
THA.LOC109116172 Tarenaya hassleriana HOM05D001231 ORTHO05D001012 9.1e-10 66.6 67 44.8
BolC2t12358H Brassica oleracea HOM05D001231 ORTHO05D001012 1.2e-09 66.2 66 45.5
Ciclev10006362m.g Citrus clementina HOM05D001231 ORTHO05D001012 1.6e-09 65.9 77 42.9
Manes.05G122400 Manihot esculenta HOM05D001231 ORTHO05D001012 1.6e-09 65.9 75 40.0
BraA02t09214Z Brassica rapa HOM05D001231 ORTHO05D001012 2.0e-09 65.5 75 42.7
Ciclev10005867m.g Citrus clementina HOM05D001231 ORTHO05D001012 2.0e-09 65.5 74 43.2
Nn7g38190 Nelumbo nucifera HOM05D001231 ORTHO05D001012 2.0e-09 65.5 75 44.0
Nitab4.5_0004431g0020 Nicotiana tabacum HOM05D001231 ORTHO05D001012 2.0e-09 65.5 77 39.0
Thhalv10005235m.g Eutrema salsugineum HOM05D001231 ORTHO05D001012 2.7e-09 65.1 75 41.3
Lalb_Chr11g0068851 Lupinus albus HOM05D001231 ORTHO05D001012 2.7e-09 65.1 76 42.1
Nn7g38263 Nelumbo nucifera HOM05D001231 ORTHO05D001012 3.5e-09 64.7 75 44.0
Solyc11g006260.2 Solanum lycopersicum HOM05D001231 ORTHO05D001012 3.5e-09 64.7 77 37.7
Thecc.04G140800 Theobroma cacao HOM05D001231 ORTHO05D001012 3.5e-09 64.7 73 39.7
Manes.02G163900 Manihot esculenta HOM05D001231 ORTHO05D001012 4.5e-09 64.3 67 43.3
Potri.T011200 Populus trichocarpa HOM05D001231 ORTHO05D001012 4.5e-09 64.3 75 37.3
Potri.T011201 Populus trichocarpa HOM05D001231 ORTHO05D001012 4.5e-09 64.3 75 37.3
FvH4_5g33001 Fragaria vesca HOM05D001231 ORTHO05D001012 1.0e-08 63.2 75 38.7
FAN04G0442 Fragaria x ananassa HOM05D001231 ORTHO05D001012 1.0e-08 63.2 75 38.7
FAN08G1943 Fragaria x ananassa HOM05D001231 ORTHO05D001012 1.0e-08 63.2 75 38.7
FAN18G0803 Fragaria x ananassa HOM05D001231 ORTHO05D001012 1.0e-08 63.2 75 38.7
Nn7g38191 Nelumbo nucifera HOM05D001231 ORTHO05D001012 1.0e-08 63.2 75 42.7
Prupe.1G201200 Prunus persica HOM05D001231 ORTHO05D001012 1.0e-08 63.2 76 38.2
Aa31LG4G12330 Aethionema arabicum HOM05D001231 ORTHO05D001012 1.3e-08 62.8 67 41.8
MELO3C005215.2 Cucumis melo HOM05D001231 ORTHO05D001012 1.3e-08 62.8 66 39.4
Potri.T011300 Populus trichocarpa HOM05D001231 ORTHO05D001012 1.3e-08 62.8 73 37.0
Potri.T011301 Populus trichocarpa HOM05D001231 ORTHO05D001012 1.3e-08 62.8 73 37.0
Ciclev10026887m.g Citrus clementina HOM05D001231 ORTHO05D001012 1.7e-08 62.4 69 37.7
Medtr3g097390 Medicago truncatula HOM05D001231 ORTHO05D001012 1.7e-08 62.4 75 38.7
TWI79G1670 Tripterygium wilfordii HOM05D001231 ORTHO05D001012 1.7e-08 62.4 75 37.3
CARHR144790 Cardamine hirsuta HOM05D001231 ORTHO05D001012 2.2e-08 62.0 50 46.0
Aqoxy3G04170 Aquilegia oxysepala HOM05D001231 ORTHO05D001012 2.9e-08 61.6 66 37.9
Nitab4.5_0007878g0020 Nicotiana tabacum HOM05D001231 ORTHO05D001012 2.9e-08 61.6 76 39.5
PGSC0003DMG400030676 Solanum tuberosum HOM05D001231 ORTHO05D001012 2.9e-08 61.6 70 41.4
Eucgr.H05052 Eucalyptus grandis HOM05D001231 ORTHO05D001012 5.0e-08 60.8 72 40.3
HanXRQChr15g0469151 Helianthus annuus HOM05D001231 ORTHO05D001012 6.5e-08 60.5 67 38.8
DCAR_026846 Daucus carota HOM05D001231 ORTHO05D001012 8.5e-08 60.1 51 49.0
Thhalv10005228m.g Eutrema salsugineum HOM05D001231 ORTHO05D001012 8.5e-08 60.1 67 38.8
HanXRQChr08g0224941 Helianthus annuus HOM05D001231 ORTHO05D001012 8.5e-08 60.1 68 42.6
Lsat_1_v5_gn_3_7561 Lactuca sativa HOM05D000756 ORTHO05D000604 8.5e-08 60.1 51 49.0
RcHm_v2.0_Chr4g0445781 Rosa chinensis HOM05D001231 ORTHO05D001012 8.5e-08 60.1 69 42.0
RcHm_v2.0_Chr4g0445791 Rosa chinensis HOM05D001231 ORTHO05D001012 8.5e-08 60.1 70 41.4
RcHm_v2.0_Chr4g0445851 Rosa chinensis HOM05D001231 ORTHO05D001012 8.5e-08 60.1 70 41.4
Lj1g0011574 Lotus japonicus HOM05D001231 ORTHO05D001012 1.9e-07 58.9 77 35.1
Nn3g18726 Nelumbo nucifera HOM05D001231 ORTHO05D001012 1.9e-07 58.9 64 40.6
MSTRG.2131 Avicennia marina HOM05D001231 ORTHO05D001012 2.5e-07 58.5 81 39.5
BcaB07g29697 Brassica carinata HOM05D001231 ORTHO05D001012 2.5e-07 58.5 54 44.4
BcaC03g18217 Brassica carinata HOM05D001231 ORTHO05D001012 2.5e-07 58.5 54 44.4
CANSAT54G0755 Cannabis sativa HOM05D001231 ORTHO05D001012 2.5e-07 58.5 73 38.4
CAN.G645.10 Capsicum annuum HOM05D001231 ORTHO05D001012 2.5e-07 58.5 58 41.4
Hund02692 Selenicereus undatus HOM05D001231 ORTHO05D001012 3.2e-07 58.2 72 38.9
CDE04G2371 Ceratophyllum demersum HOM05D001231 ORTHO05D001012 4.2e-07 57.8 66 37.9
FvH4_3g40491 Fragaria vesca HOM05D001231 ORTHO05D001012 4.2e-07 57.8 72 41.7
Carub.0005s0116 Capsella rubella HOM05D001231 ORTHO05D001012 5.5e-07 57.4 73 34.2
Sed0009045 Sechium edule HOM05D001231 ORTHO05D001012 5.5e-07 57.4 49 44.9
Carub.0005s0115 Capsella rubella HOM05D001231 ORTHO05D001012 7.2e-07 57.0 76 31.6
unitig_22.g5598 Utricularia gibba HOM05D001231 ORTHO05D001012 7.2e-07 57.0 67 40.3
CAN.G584.64 Capsicum annuum HOM05D009059 ORTHO05D011207 9.4e-07 56.6 68 42.6
CARHR144740 Cardamine hirsuta HOM05D001231 ORTHO05D001012 9.4e-07 56.6 67 34.3
ClCG02G000130 Citrullus lanatus HOM05D001231 ORTHO05D001012 1.2e-06 56.2 51 43.1
Lalb_Chr12g0206521 Lupinus albus HOM05D001231 ORTHO05D001012 1.2e-06 56.2 49 42.9
CAN.G534.6 Capsicum annuum HOM05D009059 ORTHO05D011207 1.6e-06 55.8 69 42.0
CARHR052230 Cardamine hirsuta HOM05D001231 ORTHO05D001012 1.6e-06 55.8 71 38.0
FvH4_3g14600 Fragaria vesca HOM05D001231 ORTHO05D001012 1.6e-06 55.8 75 34.7
Migut.E00476 Erythranthe guttata HOM05D001231 ORTHO05D001012 2.1e-06 55.5 74 37.8
Migut.E00740 Erythranthe guttata HOM05D001231 ORTHO05D001012 2.1e-06 55.5 76 38.2
Os02g0629800 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 2.7e-06 55.1 70 40.0
FAN25G0202 Fragaria x ananassa HOM05D001231 ORTHO05D001012 3.6e-06 54.7 75 33.3
Os03g0130300 Oryza sativa ssp. japonica HOM05D001231 ORTHO05D001012 3.6e-06 54.7 76 35.5
SGA_v2.0_scaffold23G10229 Striga asiatica HOM05D001231 ORTHO05D001012 3.6e-06 54.7 50 46.0
CAN.G584.65 Capsicum annuum HOM05D009059 ORTHO05D011207 4.7e-06 54.3 73 39.7
FAN11G1290 Fragaria x ananassa HOM05D001231 ORTHO05D001012 4.7e-06 54.3 75 33.3
Lalb_Chr12g0206371 Lupinus albus HOM05D001231 ORTHO05D001012 6.1e-06 53.9 48 41.7
CAN.G1084.24 Capsicum annuum HOM05D009059 ORTHO05D011207 8.0e-06 53.5 67 40.3
Nn7g38192 Nelumbo nucifera HOM05D001231 ORTHO05D001012 8.0e-06 53.5 81 38.3
SGA_v2.0_scaffold12G06011 Striga asiatica HOM05D014413 ORTHO05D001012 8.0e-06 53.5 79 39.2


User provided reference genes

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