Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G278400 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 8.6e-37 156.4 74 100.0
VMungo0251G2207 Vigna mungo HOM05D001231 ORTHO05D001012 5.3e-26 120.6 74 71.6
Glyma.05G198000 Glycine max HOM05D001231 ORTHO05D001012 3.1e-18 94.7 75 61.3
Phvul.002G278700 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 1.3e-16 89.4 75 56.0
Lj4g0007075 Lotus japonicus HOM05D001231 ORTHO05D001012 2.4e-15 85.1 75 54.7
Lalb_Chr12g0202761 Lupinus albus HOM05D001231 ORTHO05D001012 5.4e-15 84.0 77 55.8
Medtr8g095375 Medicago truncatula HOM05D001231 ORTHO05D001012 1.2e-14 82.8 75 52.0
Medtr8g095370 Medicago truncatula HOM05D001231 ORTHO05D001012 1.6e-14 82.4 75 53.3
CiPaw.04G178300 Carya illinoinensis HOM05D001231 ORTHO05D001012 1.1e-12 76.3 75 50.7
Phvul.002G278500 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 1.1e-12 76.3 75 52.0
Psat7g040440 Pisum sativum HOM05D001231 ORTHO05D001012 3.3e-12 74.7 71 54.9
Psat7g041040 Pisum sativum HOM05D001231 ORTHO05D001012 3.3e-12 74.7 75 49.3
Duzib268G0639 Durio zibethinus HOM05D001231 ORTHO05D001012 4.3e-12 74.3 75 48.0
Glyma.08G005300 Glycine max HOM05D001231 ORTHO05D001012 2.1e-11 72.0 85 47.1
MD00G1135500 Malus domestica HOM05D001231 ORTHO05D001012 2.8e-11 71.6 76 48.7
Duzib268G0537 Durio zibethinus HOM05D001231 ORTHO05D001012 3.7e-11 71.2 75 46.7
RcHm_v2.0_Chr7g0231101 Rosa chinensis HOM05D001231 ORTHO05D001012 3.7e-11 71.2 75 49.3
Gohir.D09G204900 Gossypium hirsutum HOM05D001231 ORTHO05D001012 4.8e-11 70.9 75 44.0
Gorai.006G228900 Gossypium raimondii HOM05D001231 ORTHO05D001012 4.8e-11 70.9 75 44.0
CiPaw.04G178400 Carya illinoinensis HOM05D001231 ORTHO05D001012 6.2e-11 70.5 76 47.4
Thecc.04G177500 Theobroma cacao HOM05D001231 ORTHO05D001012 6.2e-11 70.5 75 44.0
Cfa002248 Carpinus fangiana HOM05D001231 ORTHO05D001012 8.1e-11 70.1 75 46.7
Ca_17033_v3 Cicer arietinum L. HOM05D001231 ORTHO05D001012 8.1e-11 70.1 76 44.7
Actinidia36588 Actinidia chinensis HOM05D001231 ORTHO05D001012 1.1e-10 69.7 76 46.1
Gohir.A09G211400 Gossypium hirsutum HOM05D001231 ORTHO05D001012 1.4e-10 69.3 75 42.7
CSS0011856 Camellia sinensis var. sinensis HOM05D001231 ORTHO05D001012 1.8e-10 68.9 77 45.5
TWI75G0548 Tripterygium wilfordii HOM05D001231 ORTHO05D001012 2.4e-10 68.6 73 45.2
QL10p038692 Quercus lobata HOM05D001231 ORTHO05D001012 3.1e-10 68.2 74 43.2
Phvul.009G158000 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 4.0e-10 67.8 73 43.8
Solyc11g006950.3 Solanum lycopersicum HOM05D001231 ORTHO05D001012 4.0e-10 67.8 75 45.3
Sopen11g002870 Solanum pennellii HOM05D001231 ORTHO05D001012 4.0e-10 67.8 75 45.3
Peaxi162Scf00120g01114 Petunia axillaris HOM05D001231 ORTHO05D001012 5.3e-10 67.4 77 40.3
Hund09734 Selenicereus undatus HOM05D001231 ORTHO05D001012 5.3e-10 67.4 78 44.9
CAN.G186.35 Capsicum annuum HOM05D001231 ORTHO05D001012 6.9e-10 67.0 76 43.4
FvH4_5g33001 Fragaria vesca HOM05D001231 ORTHO05D001012 6.9e-10 67.0 75 44.0
FAN04G0442 Fragaria x ananassa HOM05D001231 ORTHO05D001012 6.9e-10 67.0 75 44.0
FAN08G1943 Fragaria x ananassa HOM05D001231 ORTHO05D001012 6.9e-10 67.0 75 44.0
FAN18G0803 Fragaria x ananassa HOM05D001231 ORTHO05D001012 6.9e-10 67.0 75 44.0
COL.COLO4_16172 Corchorus olitorius HOM05D001231 ORTHO05D001012 9.0e-10 66.6 75 42.7
Dinv20716 Davidia involucrata HOM05D001231 ORTHO05D001012 9.0e-10 66.6 75 45.3
Peaxi162Scf00072g01012 Petunia axillaris HOM05D001231 ORTHO05D001012 9.0e-10 66.6 77 42.9
Hund09741 Selenicereus undatus HOM05D001231 ORTHO05D001012 9.0e-10 66.6 78 42.3
Hund18397 Selenicereus undatus HOM05D001231 ORTHO05D001012 9.0e-10 66.6 78 44.9
COL.COLO4_16210 Corchorus olitorius HOM05D001231 ORTHO05D001012 1.2e-09 66.2 73 43.8
Hund09739 Selenicereus undatus HOM05D001231 ORTHO05D001012 1.5e-09 65.9 78 42.3
Hund22171 Selenicereus undatus HOM05D001231 ORTHO05D001012 1.5e-09 65.9 77 45.5
Potri.004G138100 Populus trichocarpa HOM05D001231 ORTHO05D001012 2.0e-09 65.5 75 42.7
EL10Ac5g10882 Beta vulgaris HOM05D001231 ORTHO05D001012 2.6e-09 65.1 65 49.2
CSS0006682 Camellia sinensis var. sinensis HOM05D001231 ORTHO05D001012 2.6e-09 65.1 77 42.9
Phvul.002G278600 Phaseolus vulgaris HOM05D001231 ORTHO05D001012 3.4e-09 64.7 73 41.1
Glyma.06G160300 Glycine max HOM05D001231 ORTHO05D001012 4.5e-09 64.3 74 45.9
Manes.07G074400 Manihot esculenta HOM05D001231 ORTHO05D001012 4.5e-09 64.3 75 44.0
Nitab4.5_0004431g0020 Nicotiana tabacum HOM05D001231 ORTHO05D001012 4.5e-09 64.3 77 41.6
Solyc07g007730.4 Solanum lycopersicum HOM05D001231 ORTHO05D001012 4.5e-09 64.3 69 43.5
BcaC03g17116 Brassica carinata HOM05D001231 ORTHO05D001012 5.8e-09 63.9 67 43.3
Manes.05G122400 Manihot esculenta HOM05D001231 ORTHO05D001012 5.8e-09 63.9 75 44.0
Prupe.1G201200 Prunus persica HOM05D001231 ORTHO05D001012 5.8e-09 63.9 76 43.4
RcHm_v2.0_Chr7g0227171 Rosa chinensis HOM05D001231 ORTHO05D001012 5.8e-09 63.9 75 42.7
C02p50240 Brassica napus HOM05D001231 ORTHO05D001012 7.6e-09 63.5 67 43.3
BolC2t11102H Brassica oleracea HOM05D001231 ORTHO05D001012 7.6e-09 63.5 67 43.3
Lalb_Chr11g0068851 Lupinus albus HOM05D001231 ORTHO05D001012 7.6e-09 63.5 76 43.4
Potri.T011300 Populus trichocarpa HOM05D001231 ORTHO05D001012 7.6e-09 63.5 73 42.5
Potri.T011301 Populus trichocarpa HOM05D001231 ORTHO05D001012 7.6e-09 63.5 73 42.5
PGSC0003DMG400030677 Solanum tuberosum HOM05D001231 ORTHO05D001012 1.0e-08 63.2 75 40.0
Thecc.04G140800 Theobroma cacao HOM05D001231 ORTHO05D001012 1.0e-08 63.2 73 42.5
Nitab4.5_0007878g0020 Nicotiana tabacum HOM05D001231 ORTHO05D001012 1.3e-08 62.8 76 40.8
Sopen07g001060 Solanum pennellii HOM05D001231 ORTHO05D001012 1.3e-08 62.8 70 40.0
THA.LOC109116172 Tarenaya hassleriana HOM05D001231 ORTHO05D001012 1.3e-08 62.8 73 38.4
Aqoxy3G04170 Aquilegia oxysepala HOM05D001231 ORTHO05D001012 1.7e-08 62.4 71 40.8
BcaB07g30354 Brassica carinata HOM05D001231 ORTHO05D001012 1.7e-08 62.4 67 41.8
Eucgr.H05052 Eucalyptus grandis HOM05D001231 ORTHO05D001012 1.7e-08 62.4 75 40.0
HanXRQChr15g0469151 Helianthus annuus HOM05D001231 ORTHO05D001012 1.7e-08 62.4 76 43.4
PGR102G0532 Punica granatum HOM05D001231 ORTHO05D001012 1.7e-08 62.4 76 46.1
Sp2g13530 Schrenkiella parvula HOM05D001231 ORTHO05D001012 1.7e-08 62.4 67 40.3
GSVIVG01000230001 Vitis vinifera HOM05D001231 ORTHO05D001012 1.7e-08 62.4 76 44.7
A02p32650 Brassica napus HOM05D001231 ORTHO05D001012 2.2e-08 62.0 67 41.8
BraA02t08280Z Brassica rapa HOM05D001231 ORTHO05D001012 2.2e-08 62.0 67 41.8
BcaB07g30710 Brassica carinata HOM05D001231 ORTHO05D001012 2.9e-08 61.6 69 40.6
BcaC06g31249 Brassica carinata HOM05D001231 ORTHO05D001012 2.9e-08 61.6 67 41.8
Sp2g13520 Schrenkiella parvula HOM05D001231 ORTHO05D001012 3.8e-08 61.2 67 41.8
Ciclev10006362m.g Citrus clementina HOM05D001231 ORTHO05D001012 4.9e-08 60.8 77 40.3
Migut.J01199 Erythranthe guttata HOM05D001231 ORTHO05D001012 4.9e-08 60.8 67 38.8
EL10Ac5g10883 Beta vulgaris HOM05D001231 ORTHO05D001012 6.5e-08 60.5 72 37.5
BcaC04g21530 Brassica carinata HOM05D001231 ORTHO05D001012 6.5e-08 60.5 67 40.3
A09p23810 Brassica napus HOM05D001231 ORTHO05D001012 6.5e-08 60.5 67 40.3
C07p32970 Brassica napus HOM05D001231 ORTHO05D001012 6.5e-08 60.5 75 34.7
C09p30680 Brassica napus HOM05D001231 ORTHO05D001012 6.5e-08 60.5 67 40.3
BolC9t55933H Brassica oleracea HOM05D001231 ORTHO05D001012 6.5e-08 60.5 67 40.3
CARHR144750 Cardamine hirsuta HOM05D001231 ORTHO05D001012 6.5e-08 60.5 67 41.8
AT2G02130 Arabidopsis thaliana HOM05D001231 ORTHO05D001012 8.4e-08 60.1 67 40.3
arahy.Tifrunner.gnm1.ann1.X2H08Z Arachis hypogaea HOM05D001231 ORTHO05D001012 8.4e-08 60.1 78 42.3
Thhalv10005228m.g Eutrema salsugineum HOM05D001231 ORTHO05D001012 8.4e-08 60.1 67 38.8
Lj1g0011574 Lotus japonicus HOM05D001231 ORTHO05D001012 8.4e-08 60.1 75 42.7
Medtr3g097370 Medicago truncatula HOM05D001231 ORTHO05D001012 8.4e-08 60.1 51 51.0
Sopen11g002190 Solanum pennellii HOM05D001231 ORTHO05D001012 8.4e-08 60.1 77 39.0
GSVIVG01010274001 Vitis vinifera HOM05D001231 ORTHO05D001012 8.4e-08 60.1 74 37.8
AL5G11380 Arabidopsis lyrata HOM05D001231 ORTHO05D001012 1.1e-07 59.7 73 37.0
DCAR_023524 Daucus carota HOM05D001231 ORTHO05D001012 1.1e-07 59.7 72 36.1
Duzib213G0741 Durio zibethinus HOM05D001231 ORTHO05D001012 1.1e-07 59.7 75 41.3
Glyma.06G160400 Glycine max HOM05D001231 ORTHO05D001012 1.1e-07 59.7 75 37.3
PGSC0003DMG400030676 Solanum tuberosum HOM05D001231 ORTHO05D001012 1.1e-07 59.7 71 39.4
AT2G02100 Arabidopsis thaliana HOM05D001231 ORTHO05D001012 1.4e-07 59.3 67 37.3
Thecc.02G298100 Theobroma cacao HOM05D001231 ORTHO05D001012 1.4e-07 59.3 78 41.0
arahy.Tifrunner.gnm1.ann1.UPL4LC Arachis hypogaea HOM05D001231 ORTHO05D001012 1.9e-07 58.9 75 40.0
BcaC06g34079 Brassica carinata HOM05D001231 ORTHO05D001012 1.9e-07 58.9 67 38.8
A06p43800 Brassica napus HOM05D001231 ORTHO05D001012 1.9e-07 58.9 67 38.8
BolC7t43808H Brassica oleracea HOM05D001231 ORTHO05D001012 1.9e-07 58.9 67 38.8
BraA06t27257Z Brassica rapa HOM05D001231 ORTHO05D001012 1.9e-07 58.9 67 38.8
ECA233G3610 Erigeron canadensis HOM05D001231 ORTHO05D001012 1.9e-07 58.9 76 40.8
Thhalv10005235m.g Eutrema salsugineum HOM05D001231 ORTHO05D001012 1.9e-07 58.9 75 42.7
Aa31LG2G7830 Aethionema arabicum HOM05D001231 ORTHO05D001012 2.5e-07 58.5 69 36.2
MSTRG.2131 Avicennia marina HOM05D001231 ORTHO05D001012 3.2e-07 58.2 78 43.6
MSTRG.23506 Avicennia marina HOM05D001231 ORTHO05D001012 3.2e-07 58.2 56 42.9
BraA09t37986Z Brassica rapa HOM05D001231 ORTHO05D001012 3.2e-07 58.2 67 38.8
Manes.02G163900 Manihot esculenta HOM05D001231 ORTHO05D001012 3.2e-07 58.2 67 41.8
Medtr8g070790 Medicago truncatula HOM05D001231 ORTHO05D001012 3.2e-07 58.2 68 41.2
Solyc11g006260.2 Solanum lycopersicum HOM05D001231 ORTHO05D001012 4.2e-07 57.8 77 37.7
Peaxi162Scf00088g01110 Petunia axillaris HOM05D001231 ORTHO05D001012 5.5e-07 57.4 70 44.3
Medtr8g070770 Medicago truncatula HOM05D001231 ORTHO05D001012 7.1e-07 57.0 70 40.0
Psat4g112240 Pisum sativum HOM05D001231 ORTHO05D001012 7.1e-07 57.0 70 41.4
Zm00001eb002390 Zea mays HOM05D001231 ORTHO05D001012 7.1e-07 57.0 67 41.8
CARHR144780 Cardamine hirsuta HOM05D001231 ORTHO05D001012 9.3e-07 56.6 67 37.3
MD02G1301000 Malus domestica HOM05D001231 ORTHO05D001012 9.3e-07 56.6 69 40.6
MD16G1009000 Malus domestica HOM05D001231 ORTHO05D001012 9.3e-07 56.6 77 40.3
Peaxi162Scf00088g00119 Petunia axillaris HOM05D001231 ORTHO05D001012 9.3e-07 56.6 70 37.1
AL5G11360 Arabidopsis lyrata HOM05D001231 ORTHO05D001012 1.2e-06 56.2 50 46.0
arahy.Tifrunner.gnm1.ann1.4H5G59 Arachis hypogaea HOM05D001231 ORTHO05D001012 1.2e-06 56.2 75 38.7
Ciclev10026887m.g Citrus clementina HOM05D001231 ORTHO05D001012 1.2e-06 56.2 73 42.5
Migut.E00476 Erythranthe guttata HOM05D001231 ORTHO05D001012 1.2e-06 56.2 75 37.3
RcHm_v2.0_Chr5g0024091 Rosa chinensis HOM05D001231 ORTHO05D001012 1.2e-06 56.2 75 38.7
Duzib248G0383 Durio zibethinus HOM05D001231 ORTHO05D001012 1.6e-06 55.8 65 35.4
Gohir.D01G035700 Gossypium hirsutum HOM05D001231 ORTHO05D001012 1.6e-06 55.8 79 39.2
Lj1g0008875 Lotus japonicus HOM05D001231 ORTHO05D001012 1.6e-06 55.8 75 34.7
Manes.18G077612 Manihot esculenta HOM05D001231 ORTHO05D001012 1.6e-06 55.8 65 38.5
Sopen07g001050 Solanum pennellii HOM05D001231 ORTHO05D001012 1.6e-06 55.8 71 38.0
PGSC0003DMG400032549 Solanum tuberosum HOM05D001231 ORTHO05D001012 1.6e-06 55.8 77 36.4
GSVIVG01036750001 Vitis vinifera HOM05D001231 ORTHO05D001012 1.6e-06 55.8 56 41.1
AT5G63660 Arabidopsis thaliana HOM05D001231 ORTHO05D001012 2.1e-06 55.5 75 41.3
Carub.0005s0117 Capsella rubella HOM05D001231 ORTHO05D001012 2.1e-06 55.5 67 35.8
Nn7g38191 Nelumbo nucifera HOM05D001231 ORTHO05D001012 2.1e-06 55.5 75 41.3
CAN.G976.3 Capsicum annuum HOM05D001231 ORTHO05D001012 2.7e-06 55.1 71 40.8
Migut.H01663 Erythranthe guttata HOM05D001231 ORTHO05D001012 2.7e-06 55.1 71 39.4
Gorai.002G043800 Gossypium raimondii HOM05D001231 ORTHO05D001012 2.7e-06 55.1 79 39.2
Lalb_Chr07g0183991 Lupinus albus HOM05D001231 ORTHO05D001012 2.7e-06 55.1 80 37.5
Peaxi162Scf00376g00828 Petunia axillaris HOM05D001231 ORTHO05D001012 2.7e-06 55.1 67 38.8
Sed0025601 Sechium edule HOM05D001231 ORTHO05D001012 2.7e-06 55.1 66 39.4
DCAR_026845 Daucus carota HOM05D001231 ORTHO05D001012 3.5e-06 54.7 72 36.1
Migut.L00621 Erythranthe guttata HOM05D001231 ORTHO05D001012 3.5e-06 54.7 80 37.5
Psat4g112000 Pisum sativum HOM05D001231 ORTHO05D001012 3.5e-06 54.7 70 37.1
RcHm_v2.0_Chr5g0024081 Rosa chinensis HOM05D001231 ORTHO05D001012 3.5e-06 54.7 74 37.8
CANSAT54G0755 Cannabis sativa HOM05D001231 ORTHO05D001012 4.6e-06 54.3 51 45.1
CARHR277540 Cardamine hirsuta HOM05D001231 ORTHO05D001012 4.6e-06 54.3 75 40.0
FvH4_3g40491 Fragaria vesca HOM05D001231 ORTHO05D001012 4.6e-06 54.3 68 41.2
Nitab4.5_0009181g0010 Nicotiana tabacum HOM05D001231 ORTHO05D001012 4.6e-06 54.3 68 41.2
AL8G40800 Arabidopsis lyrata HOM05D001231 ORTHO05D001012 6.0e-06 53.9 75 40.0
Cc06_g07880 Coffea canephora HOM05D001231 ORTHO05D001012 6.0e-06 53.9 69 40.6
Glyma.08G268000 Glycine max HOM05D001231 ORTHO05D001012 6.0e-06 53.9 63 39.7
Peaxi162Scf00025g00313 Petunia axillaris HOM05D001231 ORTHO05D001012 6.0e-06 53.9 68 38.2
Prupe.4G131400 Prunus persica HOM05D001231 ORTHO05D001012 6.0e-06 53.9 74 37.8
Solyc07g007735.1 Solanum lycopersicum HOM05D001231 ORTHO05D001012 6.0e-06 53.9 71 38.0
THA.LOC104818404 Tarenaya hassleriana HOM05D001231 ORTHO05D001012 6.0e-06 53.9 75 40.0
arahy.Tifrunner.gnm1.ann1.IDU4K1 Arachis hypogaea HOM05D001231 ORTHO05D001012 7.9e-06 53.5 67 37.3
EL10Ac5g10885 Beta vulgaris HOM05D001231 ORTHO05D001012 7.9e-06 53.5 72 36.1
CANSAT78G1068 Cannabis sativa HOM05D001231 ORTHO05D001012 7.9e-06 53.5 73 38.4
Gorai.002G043900 Gossypium raimondii HOM05D001231 ORTHO05D001012 7.9e-06 53.5 76 38.2
Gorai.002G044100 Gossypium raimondii HOM05D001231 ORTHO05D001012 7.9e-06 53.5 76 38.2
Lsat_1_v5_gn_3_7561 Lactuca sativa HOM05D000756 ORTHO05D000604 7.9e-06 53.5 58 39.7
MBI06_g26879_MAGBIO Magnolia biondii HOM05D001231 ORTHO05D001012 7.9e-06 53.5 59 39.0
Sed0009045 Sechium edule HOM05D001231 ORTHO05D001012 7.9e-06 53.5 71 38.0


User provided reference genes

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