Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G277800 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 0.0e+00 1347.0 712 100.0
Glyma.08G004700 Glycine max HOM05D005219 ORTHO05D006451 0.0e+00 1083.6 711 78.3
Glyma.05G197300 Glycine max HOM05D005219 ORTHO05D006451 0.0e+00 1075.1 712 78.8
Ca_17595_v3 Cicer arietinum L. HOM05D005219 ORTHO05D006451 1.4e-280 969.5 714 70.7
Medtr8g095210 Medicago truncatula HOM05D005219 ORTHO05D006451 8.8e-280 966.8 713 70.3
arahy.Tifrunner.gnm1.ann1.9Z2GEU Arachis hypogaea HOM05D005219 ORTHO05D006451 1.7e-278 962.6 717 70.2
arahy.Tifrunner.gnm1.ann1.4364K7 Arachis hypogaea HOM05D005219 ORTHO05D006451 3.1e-277 958.4 717 69.9
TPR.G12784 Trifolium pratense HOM05D005219 ORTHO05D006451 6.4e-270 934.1 713 68.9
Lalb_Chr12g0202821 Lupinus albus HOM05D005219 ORTHO05D006451 1.2e-268 929.9 754 70.0
Lj4g0026114 Lotus japonicus HOM05D005219 ORTHO05D006451 4.3e-266 921.4 717 68.5
Lalb_Chr13g0296831 Lupinus albus HOM05D005219 ORTHO05D006451 3.6e-265 918.3 715 67.8
Cfa002238 Carpinus fangiana HOM05D005219 ORTHO05D006451 5.4e-245 851.3 717 61.8
CiPaw.04G179100 Carya illinoinensis HOM05D005219 ORTHO05D006451 2.7e-236 822.4 721 59.6
CiPaw.03G253500 Carya illinoinensis HOM05D005219 ORTHO05D006451 3.0e-235 818.9 723 60.3
QL10p038974 Quercus lobata HOM05D005219 ORTHO05D006451 8.7e-235 817.4 731 59.4
MD15G1138200 Malus domestica HOM05D005219 ORTHO05D006451 6.2e-233 811.2 714 59.1
Prupe.4G281500 Prunus persica HOM05D005219 ORTHO05D006451 6.2e-233 811.2 716 59.2
Psat7g041880 Pisum sativum HOM05D005219 ORTHO05D006451 1.1e-229 800.4 633 67.5
ClCG02G000120 Citrullus lanatus HOM05D005219 ORTHO05D006451 3.2e-229 798.9 722 59.3
Thecc.01G233500 Theobroma cacao HOM05D005219 ORTHO05D006451 3.2e-229 798.9 731 59.9
CsaV3_2G019800 Cucumis sativus L. HOM05D005219 ORTHO05D006451 2.7e-228 795.8 722 58.7
RcHm_v2.0_Chr2g0123471 Rosa chinensis HOM05D005219 ORTHO05D006451 4.6e-228 795.0 720 59.4
Duzib147G1025 Durio zibethinus HOM05D005219 ORTHO05D006451 6.7e-227 791.2 735 60.4
VMungo1309G1202 Vigna mungo HOM05D005219 ORTHO05D006451 6.7e-227 791.2 729 58.6
FvH4_1g25450 Fragaria vesca HOM05D005219 ORTHO05D006451 2.5e-226 789.3 720 57.5
Phvul.009G157400 Phaseolus vulgaris HOM05D005219 ORTHO05D006451 4.3e-226 788.5 718 59.6
Gohir.A05G376400 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.8e-224 783.1 725 60.7
FAN28G0381 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.0e-224 781.9 720 57.4
FAN23G1877 Fragaria x ananassa HOM05D005219 ORTHO05D006451 5.3e-224 781.6 720 57.5
FAN19G1780 Fragaria x ananassa HOM05D005219 ORTHO05D006451 1.2e-223 780.4 715 57.6
Glyma.06G159700 Glycine max HOM05D005219 ORTHO05D006451 9.9e-223 777.3 756 56.9
FAN26G1898 Fragaria x ananassa HOM05D005219 ORTHO05D006451 4.6e-220 768.5 720 56.9
Gohir.D04G039600 Gossypium hirsutum HOM05D005219 ORTHO05D006451 1.8e-219 766.5 722 58.9
Gorai.012G044600 Gossypium raimondii HOM05D005219 ORTHO05D006451 3.9e-219 765.4 725 59.6
PGR142G2743 Punica granatum HOM05D005219 ORTHO05D006451 5.6e-218 761.5 730 55.6
Cpa.g.sc37.82 Carica papaya HOM05D005219 ORTHO05D006451 3.7e-217 758.8 733 56.2
Sed0017542 Sechium edule HOM05D005219 ORTHO05D006451 6.2e-217 758.1 721 57.3
Atru.chr4.1140 Acer truncatum HOM05D005219 ORTHO05D006451 9.0e-216 754.2 726 56.6
Ciclev10025072m.g Citrus clementina HOM05D005219 ORTHO05D006451 9.0e-216 754.2 714 55.5
GSVIVG01022419001 Vitis vinifera HOM05D005219 ORTHO05D006451 4.5e-215 751.9 726 54.5
CSS0004797 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 4.9e-214 748.4 732 55.3
CSS0003875 Camellia sinensis var. sinensis HOM05D005219 ORTHO05D006451 6.5e-214 748.0 732 55.3
TWI75G0018 Tripterygium wilfordii HOM05D005219 ORTHO05D006451 2.1e-212 743.0 726 56.1
Potri.019G008541 Populus trichocarpa HOM05D005219 ORTHO05D006451 2.3e-211 739.6 719 55.2
Eucgr.I00008 Eucalyptus grandis HOM05D005219 ORTHO05D006451 3.0e-211 739.2 722 57.6
Actinidia19951 Actinidia chinensis HOM05D005219 ORTHO05D006451 6.7e-211 738.0 721 54.2
Actinidia36586 Actinidia chinensis HOM05D005219 ORTHO05D004865 4.8e-209 731.9 723 53.9
Lj4C816G5 Lonicera japonica HOM05D005219 ORTHO05D006451 3.1e-208 729.2 721 53.3
TAR381G1173 Trochodendron aralioides HOM05D005219 ORTHO05D006451 4.1e-208 728.8 735 55.0
EL10Ac4g08973 Beta vulgaris HOM05D005219 ORTHO05D006451 1.2e-207 727.2 715 54.0
Nn1g08341 Nelumbo nucifera HOM05D005219 ORTHO05D006451 2.9e-206 722.6 732 55.6
Potri.004G138900 Populus trichocarpa HOM05D005219 ORTHO05D006451 2.9e-206 722.6 719 54.8
Sabra19G0006900 Salix brachista HOM05D005219 ORTHO05D006451 5.0e-206 721.8 721 54.1
CANSAT54G2070 Cannabis sativa HOM05D005219 ORTHO05D006451 1.1e-205 720.7 722 53.7
Hund06895 Selenicereus undatus HOM05D005219 ORTHO05D006451 5.1e-203 711.8 721 53.8
AUR62004810 Chenopodium quinoa HOM05D005219 ORTHO05D006451 1.4e-200 703.7 715 52.6
Cc00_g05550 Coffea canephora HOM05D005219 ORTHO05D006451 3.1e-200 702.6 725 53.1
AUR62036029 Chenopodium quinoa HOM05D005219 ORTHO05D006451 5.0e-198 695.3 753 50.9
HanXRQChr02g0043081 Helianthus annuus HOM05D005219 ORTHO05D006451 6.5e-198 694.9 717 51.6
Hund22177 Selenicereus undatus HOM05D005219 ORTHO05D006451 1.1e-197 694.1 717 53.6
Ah.06g191770 Amaranthus hybridus HOM05D005219 ORTHO05D006451 3.2e-197 692.6 718 51.7
Haze_25419 Corylus avellana HOM05D005219 ORTHO05D006451 4.8e-193 678.7 642 57.3
Peaxi162Scf00525g00059 Petunia axillaris HOM05D005219 ORTHO05D006451 3.1e-192 676.0 733 53.5
Oeu011013.3 Olea europaea HOM05D005219 ORTHO05D006451 7.0e-192 674.9 714 51.8
Nitab4.5_0002704g0040 Nicotiana tabacum HOM05D005219 ORTHO05D006451 4.5e-191 672.2 733 52.9
THA.LOC104818408 Tarenaya hassleriana HOM05D005219 ORTHO05D006451 7.7e-191 671.4 723 50.9
Nitab4.5_0000496g0030 Nicotiana tabacum HOM05D005219 ORTHO05D006451 3.8e-190 669.1 733 52.5
Lsat_1_v5_gn_5_69540 Lactuca sativa HOM05D005219 ORTHO05D006451 1.9e-189 666.8 707 50.5
Aqoxy6G00109 Aquilegia oxysepala HOM05D005219 ORTHO05D006451 3.2e-189 666.0 716 51.1
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 5.5e-189 665.2 707 51.5
MELO3C023202.2 Cucumis melo HOM05D005219 ORTHO05D006451 2.1e-188 663.3 624 56.7
A10p28110 Brassica napus HOM05D005219 ORTHO05D006451 8.0e-188 661.4 726 52.1
Oeu037875.1 Olea europaea HOM05D005219 ORTHO05D006451 5.2e-187 658.7 721 51.2
AL6G19360 Arabidopsis lyrata HOM05D005219 ORTHO05D006451 6.7e-187 658.3 738 50.0
BolC9t59579H Brassica oleracea HOM05D005219 ORTHO05D006451 4.4e-186 655.6 728 51.9
Carub.0006s0762 Capsella rubella HOM05D005219 ORTHO05D006451 7.4e-186 654.8 740 49.9
Sopen05g034930 Solanum pennellii HOM05D005219 ORTHO05D006451 7.4e-186 654.8 734 54.1
Solyc05g056530.4 Solanum lycopersicum HOM05D005219 ORTHO05D006451 9.7e-186 654.4 731 54.0
BraA10t44860Z Brassica rapa HOM05D005219 ORTHO05D006451 1.3e-185 654.1 721 51.5
CAN.G1156.53 Capsicum annuum HOM05D005219 ORTHO05D006451 4.8e-185 652.1 733 53.5
PGSC0003DMG400023442 Solanum tuberosum HOM05D005219 ORTHO05D006451 8.2e-185 651.4 732 53.7
CARHR204350 Cardamine hirsuta HOM05D005219 ORTHO05D006451 1.4e-184 650.6 732 50.1
AT5G08630 Arabidopsis thaliana HOM05D005219 ORTHO05D006451 7.0e-184 648.3 737 49.8
BcaB08g37236 Brassica carinata HOM05D005219 ORTHO05D006451 5.9e-183 645.2 716 51.0
C09p68310 Brassica napus HOM05D005219 ORTHO05D006451 5.9e-183 645.2 737 50.2
A03p04030 Brassica napus HOM05D005219 ORTHO05D006451 3.8e-182 642.5 722 54.3
Rhsim10G0123800 Rhododendron simsii HOM05D005219 ORTHO05D006451 3.8e-182 642.5 674 50.9
BraA03t09746Z Brassica rapa HOM05D005219 ORTHO05D006451 8.5e-182 641.3 722 54.3
DCAR_009584 Daucus carota HOM05D005219 ORTHO05D006451 8.5e-182 641.3 724 49.4
Manes.13G076600 Manihot esculenta HOM05D005219 ORTHO05D006451 1.9e-181 640.2 646 54.0
Aa31LG3G17910 Aethionema arabicum HOM05D005219 ORTHO05D006451 1.2e-180 637.5 769 47.6
BcaB01g05651 Brassica carinata HOM05D005219 ORTHO05D006451 8.0e-180 634.8 725 49.5
C03p04490 Brassica napus HOM05D005219 ORTHO05D006451 2.0e-178 630.2 725 49.2
Sc09g0004330 Simmondsia chinensis HOM05D005219 ORTHO05D006451 3.3e-178 629.4 639 51.3
CDE06G1179 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 4.4e-178 629.0 717 49.0
Thhalv10012814m.g Eutrema salsugineum HOM05D005219 ORTHO05D006451 1.7e-177 627.1 716 49.4
SGA_v2.0_scaffold54G19585 Striga asiatica HOM05D005219 ORTHO05D006451 5.9e-175 618.6 711 46.3
PSO170G0098 Papaver somniferum HOM05D005219 ORTHO05D006451 2.5e-173 613.2 744 48.0
PSO782G1219 Papaver somniferum HOM05D005219 ORTHO05D006451 3.6e-172 609.4 745 50.2
HPP92_011421 Vanilla planifolia HOM05D005219 ORTHO05D006451 2.3e-171 606.7 723 48.3
Migut.H00795 Erythranthe guttata HOM05D005219 ORTHO05D006451 1.8e-168 597.0 720 46.5
MSTRG.23501 Avicennia marina HOM05D005219 ORTHO05D006451 1.6e-167 594.0 675 48.7
DCAR_019997 Daucus carota HOM05D005219 ORTHO05D006451 2.3e-166 590.1 716 45.8
SHI11418 Sapria himalayana HOM05D005219 ORTHO05D006451 9.5e-165 584.7 638 49.2
Os02g0556900 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 2.3e-163 580.1 713 46.0
SGA_v2.0_scaffold211G42145 Striga asiatica HOM05D005219 ORTHO05D006451 7.5e-162 575.1 670 46.1
Dinv16800 Davidia involucrata HOM05D005219 ORTHO05D006451 4.9e-161 572.4 566 54.4
Hma1.2p1_0057F.1_g032080 Hydrangea macrophylla HOM05D005219 ORTHO05D006451 1.1e-157 561.2 635 51.0
vmacro12733 Vaccinium macrocarpon HOM05D005219 ORTHO05D006451 1.6e-151 540.8 814 41.9
unitig_899.g14489 Utricularia gibba HOM05D005219 ORTHO05D006451 8.6e-150 535.0 709 44.0
SEGI_19215 Sequoiadendron giganteum HOM05D005219 ORTHO05D006451 7.5e-146 521.9 776 43.9
Atru.chr4.1215 Acer truncatum HOM05D005219 ORTHO05D006451 7.0e-144 515.4 545 54.1
Zm00001eb182070 Zea mays HOM05D005219 ORTHO05D006451 4.3e-141 506.1 662 43.8
Sp6g34240 Schrenkiella parvula HOM05D005219 ORTHO05D006451 2.6e-138 496.9 497 52.7
ATR0737G007 Amborella trichopoda HOM05D005219 ORTHO05D006451 3.5e-135 486.5 689 41.9
Mapoly0096s0060 Marchantia polymorpha HOM05D005219 ORTHO05D006451 1.7e-121 441.0 814 36.6
Pp3c2_17910 Physcomitrium patens HOM05D005219 ORTHO05D006451 1.9e-117 427.6 755 41.5
CDE08G1591 Ceratophyllum demersum HOM05D005219 ORTHO05D006451 6.2e-116 422.5 714 38.4
MBI07_g10939_MAGBIO Magnolia biondii HOM05D005219 ORTHO05D006451 1.5e-114 417.9 734 39.8
Pp3c1_29080 Physcomitrium patens HOM05D005219 ORTHO05D006451 7.6e-114 415.6 753 39.2
AagrBONN_evm.TU.Sc2ySwM_344.1599 Anthoceros agrestis HOM05D005219 ORTHO05D006451 2.6e-90 337.4 530 39.2
ATR1136G012 Amborella trichopoda HOM05D005219 ORTHO05D006451 2.1e-87 327.8 688 34.4
Pp3c1_29082 Physcomitrium patens HOM05D005219 ORTHO05D006451 8.8e-86 322.4 514 39.5
Psat7g208160 Pisum sativum HOM05D005219 ORTHO05D006451 2.2e-73 281.2 213 66.7
CBR_g15970 Chara braunii HOM05D005219 ORTHO05D006451 1.5e-69 268.5 674 31.2
SMO144G0202 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 3.1e-67 260.8 463 34.3
SMO169G0116 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 9.7e-61 239.2 436 36.9
SMO169G0082 Selaginella moellendorffii HOM05D005219 ORTHO05D006451 1.5e-45 188.7 222 44.6
Sp6g34250 Schrenkiella parvula HOM05D005219 ORTHO05D006451 9.2e-43 179.5 127 69.3
ATR0721G071 Amborella trichopoda HOM05D005219 ORTHO05D006451 1.4e-38 165.6 222 43.2
Zm00001eb243850 Zea mays HOM05D000001 ORTHO05D000003 8.9e-38 162.9 306 35.6
Os04g0439300 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.3e-36 159.1 135 57.8
Sabra01G0147700 Salix brachista HOM05D005219 ORTHO05D006451 2.2e-36 158.3 111 69.4
Haze_25418 Corylus avellana HOM05D005219 ORTHO05D006451 7.0e-35 153.3 98 74.5
Cpa.g.c42282 Carica papaya HOM05D005219 ORTHO05D006451 4.6e-34 150.6 96 70.8
Os04g0439400 Oryza sativa ssp. japonica HOM05D005219 ORTHO05D006451 1.5e-29 135.6 95 62.1
HPP92_027054 Vanilla planifolia HOM05D005219 ORTHO05D006451 1.9e-27 128.6 130 53.8
Sabra04G0089200 Salix brachista HOM05D005219 ORTHO05D006451 9.5e-24 116.3 132 43.2
VMungo1383G0740 Vigna mungo HOM05D005219 ORTHO05D011240 2.2e-20 105.1 50 92.0
PGR119G0862 Punica granatum HOM05D005219 ORTHO05D006451 3.3e-16 91.3 197 36.0
Glyma.07G026800 Glycine max HOM05D005219 ORTHO05D021551 1.2e-15 89.4 73 56.2
CBR_g38007 Chara braunii HOM05D001908 ORTHO05D001892 1.1e-11 76.3 111 41.4
CBR_g31875 Chara braunii HOM05D028850 ORTHO05D006451 2.3e-09 68.6 418 31.3
Pp3c7_5480 Physcomitrium patens HOM05D001312 ORTHO05D001832 6.2e-07 60.5 157 31.8
VMungo0540G1437 Vigna mungo HOM05D001439 ORTHO05D002726 1.1e-06 59.7 100 38.0
Lalb_Chr18g0059381 Lupinus albus HOM05D001439 ORTHO05D002726 1.8e-06 58.9 142 33.1
Ca_18589_v3 Cicer arietinum L. HOM05D001439 ORTHO05D002726 6.9e-06 57.0 306 27.5
Ciclev10014022m.g Citrus clementina HOM05D001439 ORTHO05D002726 9.0e-06 56.6 86 41.9
DCAR_028055 Daucus carota HOM05D001439 ORTHO05D002726 9.0e-06 56.6 137 34.3
Oeu056520.3 Olea europaea HOM05D001439 ORTHO05D002726 9.0e-06 56.6 106 40.6
TPR.G19912 Trifolium pratense HOM05D001439 ORTHO05D002726 9.0e-06 56.6 110 40.0


User provided reference genes

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