Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G277500 Phaseolus vulgaris HOM05D008075 ORTHO05D010208 0.0e+00 1636.3 835 100.0
VMungo0251G2353 Vigna mungo HOM05D008075 ORTHO05D010208 0.0e+00 1333.9 851 82.1
Glyma.05G197100 Glycine max HOM05D008075 ORTHO05D010208 0.0e+00 1235.3 860 75.9
Glyma.08G004500 Glycine max HOM05D008075 ORTHO05D010208 0.0e+00 1220.3 862 75.6
VMungo0251G2339 Vigna mungo HOM05D008075 ORTHO05D010208 1.0e-290 1003.4 814 68.3
Lj4g0013275 Lotus japonicus HOM05D008075 ORTHO05D010208 1.2e-246 857.1 866 58.9
TPR.G33422 Trifolium pratense HOM05D008075 ORTHO05D010208 3.2e-244 849.0 886 57.4
Ca_17596_v3 Cicer arietinum L. HOM05D000484 ORTHO05D010208 3.4e-230 802.4 856 56.0
Medtr8g095160 Medicago truncatula HOM05D008075 ORTHO05D010208 7.3e-209 731.5 886 52.8
Psat7g041720 Pisum sativum HOM05D008075 ORTHO05D010208 5.3e-199 698.7 868 51.4
Lalb_Chr12g0202841 Lupinus albus HOM05D008075 ORTHO05D010208 9.3e-196 688.0 916 48.4
arahy.Tifrunner.gnm1.ann1.F3CBX5 Arachis hypogaea HOM05D008075 ORTHO05D010208 3.6e-179 632.9 873 48.8
arahy.Tifrunner.gnm1.ann1.BIR6X5 Arachis hypogaea HOM05D008075 ORTHO05D010208 2.9e-173 613.2 890 47.3
Dinv08171 Davidia involucrata HOM05D008075 ORTHO05D010208 4.2e-87 327.0 853 33.5
QL10p040186 Quercus lobata HOM05D008075 ORTHO05D010208 2.7e-86 324.3 886 33.1
Ciclev10024878m.g Citrus clementina HOM05D008075 ORTHO05D010208 3.5e-78 297.4 859 31.3
CiPaw.03G254600 Carya illinoinensis HOM05D008075 ORTHO05D010208 4.5e-73 280.4 493 39.1
TWI75G0788 Tripterygium wilfordii HOM05D008075 ORTHO05D010208 2.7e-70 271.2 833 31.1
TAR376G0152 Trochodendron aralioides HOM05D008075 ORTHO05D010208 6.3e-67 260.0 500 38.4
Potri.004G140000 Populus trichocarpa HOM05D008075 ORTHO05D010208 1.8e-66 258.5 874 30.5
GSVIVG01022404001 Vitis vinifera HOM05D008075 ORTHO05D010208 5.3e-66 256.9 843 30.8
Sabra04G0092100 Salix brachista HOM05D008075 ORTHO05D010208 2.9e-64 251.1 837 30.8
CSS0037312 Camellia sinensis var. sinensis HOM05D008075 ORTHO05D010208 5.0e-64 250.4 458 38.4
Cc02_g33950 Coffea canephora HOM05D008075 ORTHO05D010208 1.4e-63 248.8 838 29.1
MBI03_g11141_MAGBIO Magnolia biondii HOM05D008075 ORTHO05D010208 5.1e-61 240.4 234 53.4
Nn1g08564 Nelumbo nucifera HOM05D008075 ORTHO05D010208 1.1e-58 232.6 297 46.1
Solyc08g080000.3 Solanum lycopersicum HOM05D008075 ORTHO05D010208 1.1e-58 232.6 212 57.1
Peaxi162Scf00658g00065 Petunia axillaris HOM05D008075 ORTHO05D010208 1.4e-58 232.3 459 37.7
Manes.12G084200 Manihot esculenta HOM05D008075 ORTHO05D010208 3.1e-58 231.1 845 29.9
Sopen08g028360 Solanum pennellii HOM05D008075 ORTHO05D010208 4.1e-58 230.7 212 56.6
HanXRQChr15g0468991 Helianthus annuus HOM05D008075 ORTHO05D010208 6.9e-58 229.9 259 48.3
Sc09g0004370 Simmondsia chinensis HOM05D008075 ORTHO05D010208 1.5e-57 228.8 226 52.2
ECA233G5565 Erigeron canadensis HOM05D008075 ORTHO05D010208 3.4e-57 227.6 260 48.5
Rhsim08G0001000 Rhododendron simsii HOM05D008075 ORTHO05D010208 5.0e-56 223.8 457 37.6
PGSC0003DMG400022727 Solanum tuberosum HOM05D008075 ORTHO05D010208 5.0e-56 223.8 212 54.7
SGA_v2.0_scaffold54G19596 Striga asiatica HOM05D008075 ORTHO05D010208 5.0e-56 223.8 237 51.1
Nitab4.5_0005586g0040 Nicotiana tabacum HOM05D008075 ORTHO05D010208 8.5e-56 223.0 523 33.7
Oeu011019.1 Olea europaea HOM05D002427 ORTHO05D002818 1.9e-55 221.9 236 52.5
Nn5g27987 Nelumbo nucifera HOM05D008075 ORTHO05D010208 9.4e-55 219.5 189 60.8
THA.LOC104819473 Tarenaya hassleriana HOM05D008075 ORTHO05D010208 2.7e-54 218.0 204 52.9
AUR62039042 Chenopodium quinoa HOM05D008075 ORTHO05D010208 4.7e-54 217.2 831 28.5
EL10Ac4g08956 Beta vulgaris HOM05D008075 ORTHO05D010208 3.9e-53 214.2 208 52.9
Migut.H00807 Erythranthe guttata HOM05D008075 ORTHO05D010208 3.9e-53 214.2 270 46.7
Aqoxy2G00609 Aquilegia oxysepala HOM05D008075 ORTHO05D010208 5.1e-53 213.8 359 41.2
Lsat_1_v5_gn_5_69300 Lactuca sativa HOM05D008075 ORTHO05D010208 6.7e-53 213.4 186 57.0
HPP92_002184 Vanilla planifolia HOM05D008075 ORTHO05D010208 6.7e-53 213.4 248 47.2
SalBow1G7185 Salvia bowleyana HOM05D008075 ORTHO05D010208 3.7e-51 207.6 815 28.5
ATR0171G010 Amborella trichopoda HOM05D008075 ORTHO05D010208 6.3e-51 206.8 210 51.0
PSO782G2813 Papaver somniferum HOM05D008075 ORTHO05D010208 1.4e-50 205.7 215 50.2
Ah.06g191710 Amaranthus hybridus HOM05D008075 ORTHO05D010208 2.4e-50 204.9 843 27.4
Nitab4.5_0000947g0070 Nicotiana tabacum HOM05D008075 ORTHO05D010208 7.0e-50 203.4 212 51.9
PSO170G3563 Papaver somniferum HOM05D008075 ORTHO05D010208 2.0e-49 201.8 215 50.2
Os03g0703300 Oryza sativa ssp. japonica HOM05D008075 ORTHO05D010208 2.6e-49 201.4 325 40.0
Zm00001eb054280 Zea mays HOM05D008075 ORTHO05D010208 8.5e-48 196.4 236 46.6
Hund06889 Selenicereus undatus HOM05D008075 ORTHO05D010208 4.2e-47 194.1 840 27.9
AUR62004796 Chenopodium quinoa HOM05D008075 ORTHO05D010208 1.8e-45 188.7 859 27.1
SEGI_31365 Sequoiadendron giganteum HOM05D008075 ORTHO05D010208 1.2e-33 149.4 162 44.4
CAN.G630.6 Capsicum annuum HOM05D008075 ORTHO05D010208 3.5e-33 147.9 158 50.6
Mapoly0089s0038 Marchantia polymorpha HOM05D008075 ORTHO05D010208 3.0e-29 134.8 168 41.1
SMO266G0073 Selaginella moellendorffii HOM05D008075 ORTHO05D010208 5.7e-28 130.6 164 44.5
Pp3c16_21630 Physcomitrium patens HOM05D008075 ORTHO05D010208 1.2e-25 122.9 269 30.9
Pp3c6_3110 Physcomitrium patens HOM05D008075 ORTHO05D010208 1.2e-25 122.9 147 42.9
Nn5g27981 Nelumbo nucifera HOM05D008075 ORTHO05D010208 1.6e-22 112.5 156 43.6
Pp3c6_900 Physcomitrium patens HOM05D008075 ORTHO05D010208 1.2e-20 106.3 184 34.2
Pp3c6_920 Physcomitrium patens HOM05D008075 ORTHO05D010208 1.2e-20 106.3 184 34.2
CBR_g31168 Chara braunii HOM05D008075 ORTHO05D010208 6.4e-11 73.9 143 32.2
Nn5g28099 Nelumbo nucifera HOM05D004492 ORTHO05D005602 1.2e-09 69.7 42 71.4
AagrBONN_evm.TU.Sc2ySwM_362.1056 Anthoceros agrestis HOM05D008075 ORTHO05D010208 3.0e-08 65.1 135 31.1
CBR_g10951 Chara braunii HOM05D008075 ORTHO05D010208 3.0e-08 65.1 142 29.6
HanXRQChr07g0199571 Helianthus annuus HOM05D008075 ORTHO05D010208 4.3e-07 61.2 42 64.3


User provided reference genes

Program Settings