Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G270200 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 2.1e-38 161.8 76 100.0
Lj4g0001726 Lotus japonicus HOM05D004540 ORTHO05D004852 3.7e-27 124.4 77 76.6
TPR.G37334 Trifolium pratense HOM05D004540 ORTHO05D004852 1.1e-26 122.9 76 76.3
Glyma.05G189500 Glycine max HOM05D004540 ORTHO05D004852 1.4e-26 122.5 78 79.5
Glyma.08G147100 Glycine max HOM05D004540 ORTHO05D004852 3.2e-26 121.3 78 78.2
Medtr8g092860 Medicago truncatula HOM05D004540 ORTHO05D004852 7.0e-26 120.2 77 76.6
Lalb_Chr12g0203271 Lupinus albus HOM05D004540 ORTHO05D004852 2.0e-25 118.6 71 76.1
Prupe.6G159700 Prunus persica HOM05D004540 ORTHO05D004852 3.9e-24 114.4 78 71.8
Phvul.009G148100 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.9e-23 112.1 76 67.1
Haze_25134 Corylus avellana HOM05D004540 ORTHO05D004852 2.1e-22 108.6 73 67.1
QL06p029800 Quercus lobata HOM05D004540 ORTHO05D004852 4.7e-22 107.5 76 67.1
Cfa002837 Carpinus fangiana HOM05D004540 ORTHO05D004852 6.2e-22 107.1 73 67.1
TPR.G18724 Trifolium pratense HOM05D004540 ORTHO05D004852 1.4e-21 105.9 74 63.5
Medtr3g095690 Medicago truncatula HOM05D004540 ORTHO05D004852 1.8e-21 105.5 77 66.2
CiPaw.03G127700 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.6e-20 101.7 75 66.7
CiPaw.04G085800 Carya illinoinensis HOM05D004540 ORTHO05D004852 4.4e-20 100.9 73 64.4
Thecc.01G124700 Theobroma cacao HOM05D004540 ORTHO05D004852 5.8e-20 100.5 77 62.3
Lalb_Chr13g0296521 Lupinus albus HOM05D004540 ORTHO05D004852 1.3e-19 99.4 77 62.3
Lalb_Chr07g0184521 Lupinus albus HOM05D004540 ORTHO05D004852 2.2e-19 98.6 77 62.3
Gohir.D11G059900 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.7e-19 97.8 78 62.8
Gohir.A11G055800 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.9e-19 97.4 78 62.8
Gorai.007G064600 Gossypium raimondii HOM05D004540 ORTHO05D004852 4.9e-19 97.4 74 63.5
Ciclev10026873m.g Citrus clementina HOM05D004540 ORTHO05D004852 2.4e-18 95.1 75 58.7
Lalb_Chr08g0238521 Lupinus albus HOM05D004540 ORTHO05D004852 3.2e-18 94.7 75 61.3
Cpa.g.sc42.109 Carica papaya HOM05D004540 ORTHO05D004852 3.5e-17 91.3 79 58.2
Cc07_g17790 Coffea canephora HOM05D004540 ORTHO05D004852 3.5e-17 91.3 74 59.5
Glyma.04G215100 Glycine max HOM05D004540 ORTHO05D004852 4.6e-17 90.9 50 78.0
Gohir.A10G083507 Gossypium hirsutum HOM05D004540 ORTHO05D004852 4.6e-17 90.9 77 55.8
Potri.005G057400 Populus trichocarpa HOM05D004540 ORTHO05D004852 6.0e-17 90.5 78 55.1
Manes.13G071600 Manihot esculenta HOM05D004540 ORTHO05D004852 1.3e-16 89.4 79 58.2
Gohir.D10G105766 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.0e-16 88.2 77 54.5
Gorai.011G115500 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.0e-16 88.2 77 54.5
Potri.007G110700 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.1e-15 86.3 78 52.6
Glyma.06G151100 Glycine max HOM05D004540 ORTHO05D004852 1.5e-15 85.9 50 76.0
Gohir.A05G386200 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.3e-15 84.7 76 59.2
Gohir.D04G023300 Gossypium hirsutum HOM05D004540 ORTHO05D004852 3.3e-15 84.7 76 59.2
Gorai.012G033600 Gossypium raimondii HOM05D004540 ORTHO05D004852 3.3e-15 84.7 76 59.2
Manes.12G152100 Manihot esculenta HOM05D004540 ORTHO05D004852 3.3e-15 84.7 74 60.8
MD01G1010200 Malus domestica HOM05D004540 ORTHO05D004852 5.6e-15 84.0 83 53.0
Eucgr.I00231 Eucalyptus grandis HOM05D004540 ORTHO05D004852 8.1e-14 80.1 81 55.6
FvH4_1g23990 Fragaria vesca HOM05D004540 ORTHO05D004852 6.8e-13 77.0 82 50.0
FAN23G3045 Fragaria x ananassa HOM05D004540 ORTHO05D004852 6.8e-13 77.0 82 50.0
FAN19G2513 Fragaria x ananassa HOM05D004540 ORTHO05D004852 8.9e-13 76.6 82 50.0
FAN26G2008 Fragaria x ananassa HOM05D004540 ORTHO05D004852 1.5e-12 75.9 82 48.8
RcHm_v2.0_Chr2g0120121 Rosa chinensis HOM05D004540 ORTHO05D004852 2.6e-12 75.1 82 51.2
Nn1g06160 Nelumbo nucifera HOM05D004540 ORTHO05D004852 4.4e-12 74.3 77 53.2
MELO3C008039.2 Cucumis melo HOM05D004540 ORTHO05D004852 9.9e-12 73.2 48 68.8
Lalb_Chr21g0305401 Lupinus albus HOM05D004540 ORTHO05D004852 1.3e-11 72.8 64 51.6
CsaV3_6G041820 Cucumis sativus L. HOM05D004540 ORTHO05D004852 2.9e-11 71.6 46 71.7
Sed0025334 Sechium edule HOM05D004540 ORTHO05D004852 2.9e-11 71.6 70 52.9
CSS0044504 Camellia sinensis var. sinensis HOM05D004540 ORTHO05D004852 8.4e-11 70.1 75 50.7
CARHR094090 Cardamine hirsuta HOM05D004540 ORTHO05D004852 5.4e-10 67.4 76 46.1
Nn5g28680 Nelumbo nucifera HOM05D004540 ORTHO05D004852 5.4e-10 67.4 77 48.1
Lalb_Chr06g0161521 Lupinus albus HOM05D004540 ORTHO05D004852 7.1e-10 67.0 68 48.5
AT3G18715 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 9.2e-10 66.6 77 45.5
BcaB04g19000 Brassica carinata HOM05D004540 ORTHO05D004852 9.2e-10 66.6 79 45.6
A03p40790 Brassica napus HOM05D004540 ORTHO05D004852 1.2e-09 66.2 77 46.8
BraA03t13237Z Brassica rapa HOM05D004540 ORTHO05D004852 1.2e-09 66.2 77 46.8
A01p35740 Brassica napus HOM05D004540 ORTHO05D004852 1.6e-09 65.9 83 44.6
C03p49670 Brassica napus HOM05D004540 ORTHO05D004852 1.6e-09 65.9 77 45.5
BolC3t17265H Brassica oleracea HOM05D004540 ORTHO05D004852 1.6e-09 65.9 77 45.5
BraA01t03656Z Brassica rapa HOM05D004540 ORTHO05D004852 1.6e-09 65.9 83 44.6
Migut.H01103 Erythranthe guttata HOM05D004540 ORTHO05D004852 1.6e-09 65.9 62 53.2
Thhalv10022275m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.6e-09 65.9 78 43.6
BcaC09g48828 Brassica carinata HOM05D004540 ORTHO05D004852 2.7e-09 65.1 78 47.4
C01p45480 Brassica napus HOM05D004540 ORTHO05D004852 2.7e-09 65.1 78 47.4
BolC1t04514H Brassica oleracea HOM05D004540 ORTHO05D004852 2.7e-09 65.1 78 47.4
CiPaw.16G014800 Carya illinoinensis HOM05D004540 ORTHO05D004852 2.7e-09 65.1 68 50.0
DCAR_001351 Daucus carota HOM05D004540 ORTHO05D004852 2.7e-09 65.1 73 49.3
Potri.002G070401 Populus trichocarpa HOM05D004540 ORTHO05D004852 2.7e-09 65.1 70 52.9
CARHR278640 Cardamine hirsuta HOM05D004540 ORTHO05D004852 3.5e-09 64.7 67 46.3
Haze_17734 Corylus avellana HOM05D004540 ORTHO05D004852 4.6e-09 64.3 79 50.6
BcaB04g20754 Brassica carinata HOM05D004540 ORTHO05D004852 6.0e-09 63.9 78 47.4
AT5G64667 Arabidopsis thaliana HOM05D004540 ORTHO05D004852 7.8e-09 63.5 67 46.3
BcaB06g25922 Brassica carinata HOM05D004540 ORTHO05D004852 1.0e-08 63.2 75 44.0
BcaNung06138 Brassica carinata HOM05D004540 ORTHO05D004852 1.0e-08 63.2 75 44.0
Thhalv10005301m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 1.0e-08 63.2 67 47.8
Phvul.007G078400 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 1.0e-08 63.2 66 51.5
Thecc.08G147500 Theobroma cacao HOM05D004540 ORTHO05D004852 1.0e-08 63.2 72 45.8
A05p30900 Brassica napus HOM05D004540 ORTHO05D004852 1.7e-08 62.4 79 44.3
BraA05t21932Z Brassica rapa HOM05D004540 ORTHO05D004852 1.7e-08 62.4 79 44.3
Carub.0008s2546 Capsella rubella HOM05D004540 ORTHO05D004852 3.0e-08 61.6 60 48.3
Migut.L00903 Erythranthe guttata HOM05D004540 ORTHO05D004852 3.9e-08 61.2 73 47.9
Manes.18G089800 Manihot esculenta HOM05D004540 ORTHO05D004852 3.9e-08 61.2 67 47.8
BcaC05g28580 Brassica carinata HOM05D004540 ORTHO05D004852 6.6e-08 60.5 79 44.3
C05p46830 Brassica napus HOM05D004540 ORTHO05D004852 6.6e-08 60.5 79 44.3
BolC5t33413H Brassica oleracea HOM05D004540 ORTHO05D004852 6.6e-08 60.5 79 44.3
DCAR_014344 Daucus carota HOM05D004540 ORTHO05D004852 6.6e-08 60.5 54 51.9
Migut.L00808 Erythranthe guttata HOM05D004540 ORTHO05D004852 8.7e-08 60.1 80 41.2
Glyma.10G226800 Glycine max HOM05D004540 ORTHO05D004852 1.5e-07 59.3 72 50.0
Glyma.16G170400 Glycine max HOM05D004540 ORTHO05D004852 1.5e-07 59.3 66 43.9
Ciclev10003011m.g Citrus clementina HOM05D004540 ORTHO05D004852 1.9e-07 58.9 73 42.5
Lj5g0026068 Lotus japonicus HOM05D004540 ORTHO05D004852 1.9e-07 58.9 64 46.9
Potri.005G189900 Populus trichocarpa HOM05D004540 ORTHO05D004852 1.9e-07 58.9 73 43.8
Sabra02G0055000 Salix brachista HOM05D004540 ORTHO05D004852 1.9e-07 58.9 69 50.7
Hma1.2p1_0483F.1_g162780 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 2.5e-07 58.5 70 48.6
AL8G42080 Arabidopsis lyrata HOM05D004540 ORTHO05D004852 3.3e-07 58.2 60 46.7
arahy.Tifrunner.gnm1.ann1.M3AF87 Arachis hypogaea HOM05D004540 ORTHO05D004852 3.3e-07 58.2 76 44.7
Medtr1g099210 Medicago truncatula HOM05D004540 ORTHO05D004852 3.3e-07 58.2 64 43.8
Cfa018340 Carpinus fangiana HOM05D004540 ORTHO05D004852 5.6e-07 57.4 79 48.1
MD05G1020400 Malus domestica HOM05D019963 ORTHO05D004852 5.6e-07 57.4 78 41.0
Hma1.2p1_1454F.1_g284340 Hydrangea macrophylla HOM05D004540 ORTHO05D004852 7.3e-07 57.0 70 48.6
Glyma.02G084000 Glycine max HOM05D004540 ORTHO05D004852 9.6e-07 56.6 75 48.0
Manes.02G177000 Manihot esculenta HOM05D004540 ORTHO05D004852 9.6e-07 56.6 69 46.4
SGA_v2.0_scaffold137G35143 Striga asiatica HOM05D004540 ORTHO05D004852 9.6e-07 56.6 73 45.2
Glyma.20G165500 Glycine max HOM05D004540 ORTHO05D004852 1.2e-06 56.2 72 47.2
Prupe.8G024400 Prunus persica HOM05D004540 ORTHO05D004852 1.2e-06 56.2 77 41.6
BcaB02g09810 Brassica carinata HOM05D004540 ORTHO05D004852 1.6e-06 55.8 65 41.5
BcaC01g02698 Brassica carinata HOM05D004540 ORTHO05D004852 2.1e-06 55.5 65 47.7
A06p31460 Brassica napus HOM05D004540 ORTHO05D004852 2.1e-06 55.5 65 47.7
C03p61500 Brassica napus HOM05D004540 ORTHO05D004852 2.1e-06 55.5 65 47.7
BolC3t18411H Brassica oleracea HOM05D004540 ORTHO05D004852 2.1e-06 55.5 65 47.7
BraA06t26083Z Brassica rapa HOM05D004540 ORTHO05D004852 2.1e-06 55.5 65 47.7
Thhalv10015116m.g Eutrema salsugineum HOM05D004540 ORTHO05D004852 3.6e-06 54.7 76 40.8
BcaB01g05561 Brassica carinata HOM05D004540 ORTHO05D004852 4.7e-06 54.3 79 38.0
C03p04700 Brassica napus HOM05D004540 ORTHO05D004852 4.7e-06 54.3 79 38.0
A10p27650 Brassica napus HOM05D004540 ORTHO05D004852 6.2e-06 53.9 80 37.5
Phvul.004G098900 Phaseolus vulgaris HOM05D004540 ORTHO05D004852 8.1e-06 53.5 64 45.3


User provided reference genes

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