Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 6385.4 3204 100.0
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 5587.7 3226 88.1
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 0.0e+00 5135.9 3243 80.7
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 0.0e+00 5099.3 2873 90.1
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 0.0e+00 5080.0 3233 80.4
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 0.0e+00 4998.7 3235 79.2
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 0.0e+00 4975.2 3227 78.5
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 4944.0 3236 78.3
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 4917.8 3230 78.0
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 0.0e+00 4915.9 3230 77.9
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 0.0e+00 4566.1 2987 78.0
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 0.0e+00 4096.6 3260 66.1
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 0.0e+00 4034.2 3256 65.7
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 0.0e+00 4015.7 3272 65.3
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 0.0e+00 3969.1 3273 63.8
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3965.6 3266 64.3
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3953.7 3259 64.0
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 0.0e+00 3935.6 3259 63.8
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 0.0e+00 3920.5 3291 63.4
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3919.8 3259 63.5
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3916.7 3259 63.5
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 0.0e+00 3916.7 3260 63.5
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 0.0e+00 3892.4 3289 62.8
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 0.0e+00 3875.9 3257 63.0
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3821.6 3273 62.6
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3803.4 3264 61.9
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 0.0e+00 3800.0 3277 61.7
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 0.0e+00 3791.5 3263 61.8
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 0.0e+00 3775.3 3262 61.6
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 0.0e+00 3768.0 3318 61.3
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 0.0e+00 3764.2 3302 61.1
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 0.0e+00 3754.9 3299 60.8
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 0.0e+00 3736.8 3261 61.5
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 0.0e+00 3727.2 3256 61.5
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 0.0e+00 3664.8 3244 60.7
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 0.0e+00 3584.7 3274 58.2
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 0.0e+00 3582.0 3294 59.0
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 0.0e+00 3573.1 3274 58.3
Duzib147G0774 Durio zibethinus HOM05D004165 ORTHO05D005063 0.0e+00 3567.3 3252 59.6
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 0.0e+00 3556.1 3405 57.3
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 0.0e+00 3524.6 3274 58.0
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 0.0e+00 3515.7 3273 57.6
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3484.9 3253 58.4
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 0.0e+00 3477.2 3279 57.9
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3415.6 3283 57.1
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 0.0e+00 3401.3 3290 56.7
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 0.0e+00 3400.1 3262 57.4
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 0.0e+00 3381.7 3326 56.4
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 0.0e+00 3380.9 3309 56.3
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 0.0e+00 3364.3 3249 56.5
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 0.0e+00 3363.9 3249 56.3
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 0.0e+00 3356.2 3254 56.5
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 0.0e+00 3336.6 3225 56.2
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3335.4 3225 56.2
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 0.0e+00 3334.7 3232 55.9
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 0.0e+00 3331.6 3248 56.2
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 0.0e+00 3328.9 3229 55.9
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 0.0e+00 3309.2 3322 55.1
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 0.0e+00 3305.8 3250 55.9
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 0.0e+00 3276.1 3241 55.5
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 0.0e+00 3272.3 3270 55.2
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 0.0e+00 3266.1 3282 54.8
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 0.0e+00 3238.0 3258 55.0
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 0.0e+00 3236.8 3259 55.6
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 0.0e+00 3230.7 3135 56.1
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 0.0e+00 3228.3 3289 55.5
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 0.0e+00 3192.1 3279 55.0
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 0.0e+00 3172.9 3283 53.6
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 0.0e+00 3164.4 3289 53.6
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 0.0e+00 3147.8 3253 54.3
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 0.0e+00 2974.9 2722 58.4
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 0.0e+00 2942.1 2446 63.1
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 0.0e+00 2941.4 3272 51.7
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 0.0e+00 2892.1 3117 52.6
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 2863.2 2022 73.2
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 0.0e+00 2771.1 3004 52.8
Zm00001eb062420 Zea mays HOM05D004165 ORTHO05D005063 0.0e+00 2597.4 3252 47.0
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2592.0 3189 48.7
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 0.0e+00 2415.2 2462 53.9
GSVIVG01022255001 Vitis vinifera HOM05D004165 ORTHO05D005063 0.0e+00 2358.9 1601 76.0
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 2276.1 1224 93.1
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 0.0e+00 2220.7 2595 49.9
Eucgr.I00310 Eucalyptus grandis HOM05D004165 ORTHO05D005063 0.0e+00 2163.7 1696 66.7
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 2144.8 1990 57.8
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 0.0e+00 2089.3 3114 42.2
Nitab4.5_0009050g0020 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 2039.2 1513 70.1
Peaxi162Scf00702g00610 Petunia axillaris HOM05D004165 ORTHO05D005063 0.0e+00 2007.3 1474 70.2
Rhsim10G0147800 Rhododendron simsii HOM05D004165 ORTHO05D005063 0.0e+00 1953.7 1447 71.1
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1951.8 2417 46.7
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 0.0e+00 1924.1 2828 42.3
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1917.9 2442 46.1
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 0.0e+00 1915.6 1798 58.8
Pp3c3_30110 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1893.2 3273 37.8
Pp3c10_13600 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1885.9 3353 37.2
Pp3c7_14700 Physcomitrium patens HOM05D004165 ORTHO05D005063 0.0e+00 1803.1 3376 36.0
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1786.5 1472 64.3
Haze_25067 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1589.7 1005 80.8
VMungo0251G0498 Vigna mungo HOM05D004165 ORTHO05D005063 0.0e+00 1480.7 951 80.8
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1392.9 2152 40.2
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 0.0e+00 1307.4 969 69.8
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 0.0e+00 1293.5 1755 44.4
TPR.G2291 Trifolium pratense HOM05D004165 ORTHO05D005063 0.0e+00 1266.5 1137 63.7
HPP92_013327 Vanilla planifolia HOM05D004165 ORTHO05D005063 0.0e+00 1236.5 997 65.0
SMO116G0345 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 0.0e+00 1234.9 1549 47.4
AUR62017932 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1206.4 844 72.4
QL06p031599 Quercus lobata HOM05D004165 ORTHO05D005063 0.0e+00 1147.5 1505 45.6
AUR62003623 Chenopodium quinoa HOM05D004165 ORTHO05D005063 0.0e+00 1131.7 836 69.4
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 0.0e+00 1111.7 1530 43.5
CBR_g5608 Chara braunii HOM05D004165 ORTHO05D005063 5.0e-306 1056.2 3374 28.2
SEGI_35182 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.6e-304 1050.0 944 59.7
SEGI_21320 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.1e-300 1036.9 852 62.6
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 7.5e-262 909.4 897 54.1
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 1.2e-243 849.0 753 59.1
Peaxi162Scf00702g00617 Petunia axillaris HOM05D004165 ORTHO05D005063 5.6e-241 840.1 1291 41.4
Cpa.g.sc72.8 Carica papaya HOM05D004165 ORTHO05D005063 3.8e-205 721.1 411 88.1
PGSC0003DMG402020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 7.2e-204 716.8 441 80.7
Haze_25071 Corylus avellana HOM05D004165 ORTHO05D005063 6.5e-181 640.6 821 45.8
COL.COLO4_22365 Corchorus olitorius HOM05D004165 ORTHO05D005063 4.7e-171 607.8 815 44.3
GSVIVG01022257001 Vitis vinifera HOM05D004165 ORTHO05D005063 4.4e-153 548.1 841 40.2
Psat4g052480 Pisum sativum HOM05D004165 ORTHO05D005063 2.9e-152 545.4 565 57.9
AagrBONN_evm.TU.Sc2ySwM_344.5499 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.5e-145 523.1 658 45.6
Psat4g052520 Pisum sativum HOM05D004165 ORTHO05D005063 5.6e-132 478.0 333 77.5
Os01g0182900 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 2.4e-130 472.6 327 71.3
Haze_25069 Corylus avellana HOM05D004165 ORTHO05D005063 4.4e-129 468.4 411 58.4
CAN.G1044.6 Capsicum annuum HOM05D004165 ORTHO05D005063 4.0e-122 445.3 270 80.4
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 5.4e-119 434.9 456 51.3
COL.COLO4_22363 Corchorus olitorius HOM05D004165 ORTHO05D005063 1.0e-117 430.6 250 83.6
Cpa.g.sc72.12 Carica papaya HOM05D004165 ORTHO05D005063 7.4e-116 424.5 531 48.0
CAN.G1044.9 Capsicum annuum HOM05D004165 ORTHO05D005063 1.5e-113 416.8 826 33.4
Dinv05635 Davidia involucrata HOM05D004165 ORTHO05D005063 1.7e-112 413.3 824 36.2
DCAR_016673 Daucus carota HOM05D004165 ORTHO05D005063 5.7e-108 398.3 814 33.7
Psat0s5282g0080 Pisum sativum HOM05D004165 ORTHO05D005063 8.2e-107 394.4 217 91.2
SHI11781 Sapria himalayana HOM05D004165 ORTHO05D005063 1.5e-105 390.2 879 33.1
Cpa.g.sc72.10 Carica papaya HOM05D004165 ORTHO05D005063 5.0e-104 385.2 301 63.5
CAN.G1044.7 Capsicum annuum HOM05D004165 ORTHO05D005063 1.4e-93 350.5 416 48.6
SHI11786 Sapria himalayana HOM05D004165 ORTHO05D005063 5.1e-93 348.6 444 41.9
SHI11797 Sapria himalayana HOM05D004165 ORTHO05D005063 2.6e-89 336.3 244 66.0
Cpa.g.sc72.14 Carica papaya HOM05D004165 ORTHO05D005063 7.9e-86 324.7 241 65.6
Oeu054940.1 Olea europaea HOM05D004165 ORTHO05D005063 3.0e-85 322.8 651 35.8
Cpa.g.sc72.15 Carica papaya HOM05D004165 ORTHO05D005063 3.7e-83 315.8 353 49.0
SEGI_28584 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 2.4e-82 313.2 308 54.9
CDE07G1151 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 3.1e-82 312.8 833 30.4
SHI11791 Sapria himalayana HOM05D004165 ORTHO05D005063 9.1e-74 284.6 299 53.2
SHI11792 Sapria himalayana HOM05D004165 ORTHO05D005063 2.5e-71 276.6 326 49.4
TAR629G2775 Trochodendron aralioides HOM05D004165 ORTHO05D005063 3.4e-68 266.2 782 28.9
Cpa.g.sc72.11 Carica papaya HOM05D004165 ORTHO05D005063 6.1e-62 245.4 155 74.8
SHI11785 Sapria himalayana HOM05D004165 ORTHO05D005063 3.4e-60 239.6 336 40.2
SEGI_28346 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.4e-60 239.6 972 27.1
Os01g0182832 Oryza sativa ssp. japonica HOM05D004165 ORTHO05D005063 4.7e-54 219.2 660 27.7
SMO116G0288 Selaginella moellendorffii HOM05D004165 ORTHO05D005063 8.3e-51 208.4 394 35.8
SHI11788 Sapria himalayana HOM05D004165 ORTHO05D005063 1.9e-47 197.2 194 54.1
AagrBONN_evm.TU.Sc2ySwM_344.5500 Anthoceros agrestis HOM05D004165 ORTHO05D005063 1.8e-45 190.7 729 25.5
SHI11794 Sapria himalayana HOM05D004165 ORTHO05D005063 3.4e-36 159.8 118 68.6
Psat0ss6263g0080 Pisum sativum HOM05D004165 ORTHO05D005166 1.7e-35 157.5 141 61.7
Psat5g077040 Pisum sativum HOM05D004628 ORTHO05D005166 2.2e-35 157.1 118 72.0
arahy.Tifrunner.gnm1.ann1.SA1CMP Arachis hypogaea HOM05D004165 ORTHO05D023735 2.4e-34 153.7 149 60.4
Psat0ss6263g0240 Pisum sativum HOM05D004165 ORTHO05D005166 2.1e-33 150.6 136 62.5
Psat5g190880 Pisum sativum HOM05D004165 ORTHO05D326560 3.5e-33 149.8 97 77.3
Dinv05989 Davidia involucrata HOM05D004165 ORTHO05D005063 5.6e-31 142.5 82 84.1
TPR.G35587 Trifolium pratense HOM05D004165 ORTHO05D005063 1.6e-25 124.4 70 90.0
Dinv05988 Davidia involucrata HOM05D004165 ORTHO05D005063 4.3e-23 116.3 86 66.3
SHI11789 Sapria himalayana HOM05D004165 ORTHO05D005063 1.2e-20 108.2 109 54.1
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 5.4e-18 99.4 110 45.5
Sabra16G0108800 Salix brachista HOM05D000241 ORTHO05D001001 3.4e-12 80.1 60 63.3
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 4.9e-11 76.3 95 38.9
Lsat_1_v5_gn_1_66781 Lactuca sativa HOM05D000921 ORTHO05D002852 3.2e-10 73.6 148 34.5
Lsat_1_v5_gn_3_124661 Lactuca sativa HOM05D004165 ORTHO05D232501 2.7e-09 70.5 59 61.0
Lsat_1_v5_gn_3_81660 Lactuca sativa HOM05D000921 ORTHO05D002852 4.6e-09 69.7 63 54.0
Cpa.g.c46795 Carica papaya HOM05D004165 ORTHO05D005063 7.9e-09 68.9 58 63.8
SHI11793 Sapria himalayana HOM05D004165 ORTHO05D005063 1.7e-08 67.8 45 71.1
Lsat_1_v5_gn_9_124480 Lactuca sativa HOM05D001159 ORTHO05D001712 1.1e-07 65.1 59 50.8
Lsat_1_v5_gn_5_173760 Lactuca sativa HOM05D000298 ORTHO05D233122 8.1e-06 58.9 68 51.5


User provided reference genes

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