Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G265700 Phaseolus vulgaris HOM05D002293 ORTHO05D005475 8.6e-126 453.8 242 100.0
VMungo0251G0649 Vigna mungo HOM05D002293 ORTHO05D005475 4.3e-117 424.9 242 92.6
Glyma.05G184800 Glycine max HOM05D002293 ORTHO05D005475 1.8e-115 419.5 242 90.1
Glyma.08G142800 Glycine max HOM05D002293 ORTHO05D005475 6.8e-115 417.5 242 90.1
Lj4g0016673 Lotus japonicus HOM05D002293 ORTHO05D005475 3.5e-111 405.2 242 86.8
Ca_17689_v3 Cicer arietinum L. HOM05D002293 ORTHO05D005475 5.4e-104 381.3 242 81.4
Lalb_Chr07g0184761 Lupinus albus HOM05D002293 ORTHO05D005475 1.1e-99 367.1 242 78.9
Medtr8g092040 Medicago truncatula HOM05D002293 ORTHO05D005475 8.9e-99 364.0 245 78.0
TPR.G20796 Trifolium pratense HOM05D002293 ORTHO05D005475 3.4e-98 362.1 246 78.5
GSVIVG01022249001 Vitis vinifera HOM05D002293 ORTHO05D005475 4.4e-98 361.7 242 78.1
arahy.Tifrunner.gnm1.ann1.GC7XSK Arachis hypogaea HOM05D002293 ORTHO05D005475 2.9e-97 359.0 243 77.8
Dinv42674 Davidia involucrata HOM05D002293 ORTHO05D005475 1.4e-96 356.7 242 76.4
Eucgr.H04880 Eucalyptus grandis HOM05D002293 ORTHO05D005475 1.2e-95 353.6 242 76.4
CsaV3_6G042260 Cucumis sativus L. HOM05D002293 ORTHO05D005475 3.5e-95 352.1 242 75.2
Manes.12G143700 Manihot esculenta HOM05D002293 ORTHO05D005475 3.5e-95 352.1 242 75.6
PGR102G1541 Punica granatum HOM05D002293 ORTHO05D005475 3.5e-95 352.1 242 75.6
Lalb_Chr12g0203481 Lupinus albus HOM05D002293 ORTHO05D005475 4.6e-95 351.7 230 80.0
CSS0016943 Camellia sinensis var. sinensis HOM05D002293 ORTHO05D005475 6.0e-95 351.3 243 76.5
CiPaw.04G090200 Carya illinoinensis HOM05D002293 ORTHO05D005475 1.0e-94 350.5 244 76.6
CiPaw.03G133000 Carya illinoinensis HOM05D002293 ORTHO05D005475 2.3e-94 349.4 242 76.0
Actinidia12214 Actinidia chinensis HOM05D002293 ORTHO05D005475 6.6e-94 347.8 242 75.6
Nn3g18603 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.1e-93 347.1 242 74.4
Prupe.6G169300 Prunus persica HOM05D002293 ORTHO05D005475 1.1e-93 347.1 242 75.6
MD01G1021000 Malus domestica HOM05D002293 ORTHO05D005475 2.5e-93 345.9 242 75.2
Sed0002744 Sechium edule HOM05D002293 ORTHO05D005475 3.3e-93 345.5 242 76.4
vmacro08972 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 3.3e-93 345.5 242 75.2
Atru.chr4.451 Acer truncatum HOM05D002293 ORTHO05D005475 4.3e-93 345.1 242 74.8
Cpa.g.sc72.4 Carica papaya HOM05D002293 ORTHO05D005475 4.3e-93 345.1 242 75.2
RcHm_v2.0_Chr2g0117231 Rosa chinensis HOM05D002293 ORTHO05D005475 4.3e-93 345.1 242 74.8
Potri.007G079500 Populus trichocarpa HOM05D002293 ORTHO05D005475 5.6e-93 344.7 242 73.1
MD15G1331100 Malus domestica HOM05D002293 ORTHO05D005475 9.6e-93 344.0 242 74.8
Dinv41022 Davidia involucrata HOM05D002293 ORTHO05D005475 2.1e-92 342.8 243 73.7
Hma1.2p1_0358F.1_g134890 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 2.1e-92 342.8 243 75.7
Actinidia05381 Actinidia chinensis HOM05D002293 ORTHO05D005475 2.8e-92 342.4 243 75.3
TWI75G0492 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 3.6e-92 342.0 242 73.6
arahy.Tifrunner.gnm1.ann1.LE5EW2 Arachis hypogaea HOM05D002293 ORTHO05D005475 4.7e-92 341.7 279 67.7
Cfa002767 Carpinus fangiana HOM05D002293 ORTHO05D005475 6.2e-92 341.3 242 73.6
PSO675G2787 Papaver somniferum HOM05D002293 ORTHO05D005475 8.1e-92 340.9 243 75.3
Gohir.A11G054000 Gossypium hirsutum HOM05D002293 ORTHO05D005475 1.4e-91 340.1 242 74.0
Ciclev10026373m.g Citrus clementina HOM05D002293 ORTHO05D005475 2.4e-91 339.3 242 74.4
TWI31G0415 Tripterygium wilfordii HOM05D002293 ORTHO05D005475 3.1e-91 339.0 242 74.0
Hma1.2p1_2282F.1_g318820 Hydrangea macrophylla HOM05D002293 ORTHO05D005475 4.0e-91 338.6 243 74.5
PSO541G6166 Papaver somniferum HOM05D002293 ORTHO05D005475 5.2e-91 338.2 243 74.1
Sc03g0004490 Simmondsia chinensis HOM05D002293 ORTHO05D005475 5.2e-91 338.2 242 72.3
Gohir.D11G057500 Gossypium hirsutum HOM05D002293 ORTHO05D005475 6.8e-91 337.8 242 74.0
Haze_25060 Corylus avellana HOM05D002293 ORTHO05D005475 8.9e-91 337.4 242 73.6
Duzib264G1168 Durio zibethinus HOM05D002293 ORTHO05D005475 1.2e-90 337.0 242 74.0
QL06p031785 Quercus lobata HOM05D002293 ORTHO05D005475 1.5e-90 336.7 241 73.4
Thecc.01G115200 Theobroma cacao HOM05D002293 ORTHO05D005475 2.6e-90 335.9 242 72.7
Potri.005G085500 Populus trichocarpa HOM05D002293 ORTHO05D005475 7.6e-90 334.3 242 71.9
Aqoxy6G00441 Aquilegia oxysepala HOM05D002293 ORTHO05D005475 1.3e-89 333.6 243 73.7
Gorai.007G062700 Gossypium raimondii HOM05D002293 ORTHO05D005475 1.7e-89 333.2 242 73.1
CANSAT01G0963 Cannabis sativa HOM05D002293 ORTHO05D005475 2.9e-89 332.4 243 72.0
Gohir.D11G228400 Gossypium hirsutum HOM05D002293 ORTHO05D005475 3.8e-89 332.0 243 72.8
ClCG01G015980 Citrullus lanatus HOM05D002293 ORTHO05D005475 4.9e-89 331.6 229 74.2
Gohir.A11G196900 Gossypium hirsutum HOM05D002293 ORTHO05D005475 8.4e-89 330.9 243 73.7
Sabra07G0066700 Salix brachista HOM05D002293 ORTHO05D005475 1.1e-88 330.5 229 73.4
Nn5g28871 Nelumbo nucifera HOM05D002293 ORTHO05D005475 1.9e-88 329.7 245 72.2
FvH4_1g22890 Fragaria vesca HOM05D002293 ORTHO05D005475 2.4e-88 329.3 242 71.9
Dinv19470 Davidia involucrata HOM05D002293 ORTHO05D005475 1.6e-87 326.6 220 75.5
MSTRG.24489 Avicennia marina HOM05D002293 ORTHO05D005475 6.0e-87 324.7 245 71.4
Oeu046075.1 Olea europaea HOM05D002293 ORTHO05D005475 7.8e-87 324.3 245 71.4
Migut.N02943 Erythranthe guttata HOM05D002293 ORTHO05D005475 1.7e-86 323.2 245 71.4
Rhsim08G0005300 Rhododendron simsii HOM05D002293 ORTHO05D005475 1.1e-85 320.5 283 63.3
AUR62003295 Chenopodium quinoa HOM05D002293 ORTHO05D005475 3.3e-85 318.9 244 69.7
Thhalv10000307m.g Eutrema salsugineum HOM05D002293 ORTHO05D005475 1.3e-84 317.0 242 65.7
EL10Ac6g14774 Beta vulgaris HOM05D002293 ORTHO05D005475 3.6e-84 315.5 242 67.8
SalBow6G4022 Salvia bowleyana HOM05D002293 ORTHO05D005475 3.6e-84 315.5 246 69.1
HanXRQChr02g0042411 Helianthus annuus HOM05D002293 ORTHO05D005475 4.8e-84 315.1 240 71.7
Nn2g12418 Nelumbo nucifera HOM05D002293 ORTHO05D005475 4.8e-84 315.1 242 70.2
ATR0736G207 Amborella trichopoda HOM05D002293 ORTHO05D005475 1.1e-83 313.9 243 70.0
BraA04t17281Z Brassica rapa HOM05D002293 ORTHO05D005475 1.4e-83 313.5 242 66.1
HanXRQChr04g0115601 Helianthus annuus HOM05D002293 ORTHO05D005475 1.4e-83 313.5 241 70.1
Psat0s281g0080 Pisum sativum HOM05D002293 ORTHO05D005475 1.4e-83 313.5 242 69.4
Sabra05G0070400 Salix brachista HOM05D002293 ORTHO05D005475 1.4e-83 313.5 291 60.1
Gorai.007G246300 Gossypium raimondii HOM05D002293 ORTHO05D005475 2.4e-83 312.8 221 73.8
Lsat_1_v5_gn_9_42461 Lactuca sativa HOM05D002293 ORTHO05D005475 4.0e-83 312.0 238 69.3
AT2G21870 Arabidopsis thaliana HOM05D002293 ORTHO05D005475 6.9e-83 311.2 242 64.9
Sp4g00960 Schrenkiella parvula HOM05D002293 ORTHO05D005475 6.9e-83 311.2 242 65.3
BcaB06g27791 Brassica carinata HOM05D002293 ORTHO05D005475 9.0e-83 310.8 242 65.3
BcaC02g08759 Brassica carinata HOM05D002293 ORTHO05D005475 1.2e-82 310.5 242 65.7
C04p50970 Brassica napus HOM05D002293 ORTHO05D005475 1.2e-82 310.5 242 65.7
Duzib147G0641 Durio zibethinus HOM05D002293 ORTHO05D005475 1.5e-82 310.1 222 73.9
THA.LOC104804134 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.0e-82 309.7 242 65.7
A04p16460 Brassica napus HOM05D002293 ORTHO05D005475 3.4e-82 308.9 243 65.8
Hund19634 Selenicereus undatus HOM05D002293 ORTHO05D005475 7.6e-82 307.8 244 68.0
Aa31LG7G14740 Aethionema arabicum HOM05D002293 ORTHO05D005475 9.9e-82 307.4 242 64.5
BcaB08g35009 Brassica carinata HOM05D002293 ORTHO05D005475 9.9e-82 307.4 242 65.3
Carub.0004s0090 Capsella rubella HOM05D002293 ORTHO05D005475 9.9e-82 307.4 242 64.9
ECA247G2680 Erigeron canadensis HOM05D002293 ORTHO05D005475 1.3e-81 307.0 239 68.6
C08p41150 Brassica napus HOM05D002293 ORTHO05D005475 2.9e-81 305.8 242 65.3
THA.LOC104824852 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 2.9e-81 305.8 242 64.9
PGSC0003DMG400025052 Solanum tuberosum HOM05D002293 ORTHO05D005475 3.8e-81 305.4 244 68.4
AUR62027167 Chenopodium quinoa HOM05D002293 ORTHO05D005475 1.4e-80 303.5 231 69.3
CARHR112910 Cardamine hirsuta HOM05D002293 ORTHO05D005475 1.9e-80 303.1 242 63.2
BolC4t26688H Brassica oleracea HOM05D002293 ORTHO05D005475 3.2e-80 302.4 247 63.6
Sopen04g028170 Solanum pennellii HOM05D002293 ORTHO05D005475 3.2e-80 302.4 244 67.6
Solyc04g072047.1 Solanum lycopersicum HOM05D002293 ORTHO05D005475 4.2e-80 302.0 244 67.2
BcaC07g41114 Brassica carinata HOM05D002293 ORTHO05D005475 5.4e-80 301.6 243 65.0
BolC8t51682H Brassica oleracea HOM05D002293 ORTHO05D005475 5.4e-80 301.6 243 65.0
Lj2A567T21 Lonicera japonica HOM05D002293 ORTHO05D005475 9.3e-80 300.8 197 80.7
TAR376G0974 Trochodendron aralioides HOM05D002293 ORTHO05D005475 9.3e-80 300.8 198 80.3
unitig_8.g4827 Utricularia gibba HOM05D002293 ORTHO05D005475 1.2e-79 300.4 244 68.9
Ah.03g141640 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.6e-79 300.1 223 69.1
Glyma.14G174100 Glycine max HOM05D002293 ORTHO05D005475 2.7e-79 299.3 175 88.6
THA.LOC104807725 Tarenaya hassleriana HOM05D002293 ORTHO05D005475 1.0e-78 297.4 244 63.1
Nitab4.5_0004252g0010 Nicotiana tabacum HOM05D002293 ORTHO05D005475 1.3e-78 297.0 259 64.5
BraA09t41184Z Brassica rapa HOM05D002293 ORTHO05D005475 1.7e-78 296.6 245 64.1
SGA_v2.0_scaffold54G19692 Striga asiatica HOM05D002293 ORTHO05D005475 1.7e-78 296.6 244 67.6
CAN.G1252.8 Capsicum annuum HOM05D002293 ORTHO05D005475 3.0e-78 295.8 232 68.1
A09p57920 Brassica napus HOM05D002293 ORTHO05D005475 6.6e-78 294.7 245 64.1
Sc16g0004130 Simmondsia chinensis HOM05D002293 ORTHO05D005475 8.7e-78 294.3 197 77.7
Lj7A386T88 Lonicera japonica HOM05D002293 ORTHO05D005475 3.3e-77 292.4 197 77.7
HPP92_010855 Vanilla planifolia HOM05D002293 ORTHO05D005475 4.3e-77 292.0 245 64.5
Duzib187G0135 Durio zibethinus HOM05D002293 ORTHO05D005475 5.6e-77 291.6 197 79.7
SGA_v2.0_scaffold364G49965 Striga asiatica HOM05D002293 ORTHO05D005475 1.3e-76 290.4 199 75.4
FAN26G3412 Fragaria x ananassa HOM05D002293 ORTHO05D005475 2.8e-76 289.3 200 75.5
Nitab4.5_0001000g0170 Nicotiana tabacum HOM05D002293 ORTHO05D005475 2.8e-76 289.3 259 62.9
FAN28G2749 Fragaria x ananassa HOM05D002293 ORTHO05D005475 4.8e-76 288.5 200 76.0
FAN23G0553 Fragaria x ananassa HOM05D002293 ORTHO05D005475 6.2e-76 288.1 200 75.5
MELO3C007468.2 Cucumis melo HOM05D002293 ORTHO05D005475 8.1e-76 287.7 197 75.6
Lsat_1_v5_gn_1_5861 Lactuca sativa HOM05D002293 ORTHO05D005475 2.4e-75 286.2 282 58.9
FAN19G1282 Fragaria x ananassa HOM05D002293 ORTHO05D005475 5.3e-75 285.0 200 75.0
DCAR_019970 Daucus carota HOM05D002293 ORTHO05D005475 1.2e-74 283.9 240 65.8
Oeu061454.1 Olea europaea HOM05D002293 ORTHO05D005475 4.5e-74 282.0 289 57.1
Zm00001eb231220 Zea mays HOM05D002293 ORTHO05D005475 5.8e-74 281.6 245 64.1
Zm00001eb209000 Zea mays HOM05D002293 ORTHO05D005475 4.9e-73 278.5 245 62.4
Ah.02g125930 Amaranthus hybridus HOM05D002293 ORTHO05D005475 1.9e-72 276.6 197 73.1
AL4G11180 Arabidopsis lyrata HOM05D002293 ORTHO05D005475 2.5e-69 266.2 197 68.5
TAR381G0840 Trochodendron aralioides HOM05D002293 ORTHO05D005475 2.9e-65 252.7 179 71.5
Hund03526 Selenicereus undatus HOM05D002293 ORTHO05D005475 2.7e-63 246.1 220 60.5
COL.COLO4_10988 Corchorus olitorius HOM05D002293 ORTHO05D005475 1.3e-62 243.8 189 65.6
TAR625G1205 Trochodendron aralioides HOM05D002293 ORTHO05D005475 2.2e-57 226.5 197 64.0
CDE04G0337 Ceratophyllum demersum HOM05D002293 ORTHO05D005475 8.7e-54 214.5 223 55.6
Peaxi162Scf17813g00005 Petunia axillaris HOM05D002293 ORTHO05D005475 2.8e-52 209.5 156 71.2
Lalb_Chr13g0296251 Lupinus albus HOM05D002293 ORTHO05D005475 2.4e-51 206.5 130 80.8
Haze_25047 Corylus avellana HOM05D002293 ORTHO05D005475 1.3e-49 200.7 135 76.3
Zm00001eb114730 Zea mays HOM05D002293 ORTHO05D005475 2.8e-44 183.0 156 64.7
Lalb_Chr13g0296261 Lupinus albus HOM05D002293 ORTHO05D005475 1.4e-40 170.6 113 79.6
vmacro12893 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 2.7e-39 166.4 178 53.9
Rhsim10G0148500 Rhododendron simsii HOM05D002293 ORTHO05D005475 3.1e-35 152.9 150 59.3
Mapoly0014s0184 Marchantia polymorpha HOM05D002293 ORTHO05D005475 3.8e-33 146.0 199 43.2
AagrBONN_evm.TU.Sc2ySwM_117.3341 Anthoceros agrestis HOM05D002293 ORTHO05D005475 3.0e-30 136.3 223 35.9
HPP92_010897 Vanilla planifolia HOM05D002293 ORTHO05D005475 4.4e-29 132.5 223 42.2
Pp3c9_7910 Physcomitrium patens HOM05D002293 ORTHO05D005475 1.1e-27 127.9 210 37.1
Nn8g40924 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.2e-24 116.3 233 39.5
vmacro18642 Vaccinium macrocarpon HOM05D002293 ORTHO05D005475 1.6e-23 114.0 236 38.6
Peaxi162Scf00226g00011 Petunia axillaris HOM05D002293 ORTHO05D005475 5.2e-22 109.0 97 59.8
CBR_g39756 Chara braunii HOM05D002293 ORTHO05D005475 6.8e-22 108.6 199 36.7
ATR0736G144 Amborella trichopoda HOM05D006066 ORTHO05D007720 2.0e-21 107.1 77 68.8
CBR_g72646 Chara braunii HOM05D002293 ORTHO05D005475 2.0e-21 107.1 199 34.7
Gohir.D08G112008 Gossypium hirsutum HOM05D001556 ORTHO05D005475 5.0e-17 92.4 67 71.6
unitig_744.g24089 Utricularia gibba HOM05D002293 ORTHO05D005475 1.4e-14 84.3 64 71.9
SEGI_39212 Sequoiadendron giganteum HOM05D002293 ORTHO05D005475 2.0e-13 80.5 64 65.6
Nn2g12848 Nelumbo nucifera HOM05D002293 ORTHO05D005475 3.5e-10 69.7 178 33.7
SMO367G0772 Selaginella moellendorffii HOM05D002293 ORTHO05D005475 2.1e-07 60.5 196 28.6
BcaC09g49352 Brassica carinata HOM05D000853 ORTHO05D000723 4.0e-06 56.2 40 72.5
BcaC08g42952 Brassica carinata HOM05D004411 ORTHO05D032662 5.2e-06 55.8 54 59.3


User provided reference genes

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