Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G257500 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 2.7e-155 552.0 281 100.0
VMungo0251G2176 Vigna mungo HOM05D003615 ORTHO05D004858 9.0e-135 483.8 281 86.8
Glyma.08G134200 Glycine max HOM05D003615 ORTHO05D004858 1.1e-105 387.1 285 70.9
Lj4g0011563 Lotus japonicus HOM05D003615 ORTHO05D004858 3.3e-97 359.0 303 65.0
Lj4g0013299 Lotus japonicus HOM05D003615 ORTHO05D004858 9.1e-87 324.3 294 63.9
Psat7g055960 Pisum sativum HOM05D003615 ORTHO05D004858 2.6e-86 322.8 292 61.6
TPR.G6213 Trifolium pratense HOM05D003615 ORTHO05D004858 4.7e-83 312.0 300 59.0
arahy.Tifrunner.gnm1.ann1.2199FB Arachis hypogaea HOM05D003615 ORTHO05D004858 1.4e-79 300.4 289 57.8
arahy.Tifrunner.gnm1.ann1.1EVC3W Arachis hypogaea HOM05D003615 ORTHO05D004858 1.0e-77 294.3 284 58.8
Medtr1g060280 Medicago truncatula HOM05D003615 ORTHO05D004858 4.2e-76 288.9 282 59.6
Glyma.18G137000 Glycine max HOM05D003615 ORTHO05D004858 1.3e-64 250.8 280 48.9
VMungo0251G0576 Vigna mungo HOM05D003615 ORTHO05D004858 4.9e-64 248.8 278 49.3
Glyma.05G176900 Glycine max HOM05D003615 ORTHO05D004858 7.8e-62 241.5 176 72.2
Phvul.003G052700 Phaseolus vulgaris HOM05D003615 ORTHO05D004858 1.0e-61 241.1 277 47.7
Medtr8g063930 Medicago truncatula HOM05D003615 ORTHO05D004858 1.5e-57 227.3 279 48.0
QL03p061749 Quercus lobata HOM05D003615 ORTHO05D004858 7.5e-57 224.9 293 45.7
Haze_12144 Corylus avellana HOM05D003615 ORTHO05D004858 3.2e-55 219.5 282 46.5
QL03p061743 Quercus lobata HOM05D003615 ORTHO05D004858 3.2e-55 219.5 278 44.6
Duzib268G1044 Durio zibethinus HOM05D003615 ORTHO05D004858 4.1e-55 219.2 275 44.7
Medtr8g090020 Medicago truncatula HOM05D003615 ORTHO05D004858 6.0e-54 215.3 212 59.0
Lj4g0014300 Lotus japonicus HOM05D003615 ORTHO05D004858 1.7e-53 213.8 283 45.2
Glyma.08G288200 Glycine max HOM05D003615 ORTHO05D004858 3.9e-53 212.6 281 44.5
Atru.chr11.2003 Acer truncatum HOM05D003615 ORTHO05D004858 1.1e-52 211.1 276 44.9
Psat4g124720 Pisum sativum HOM05D003615 ORTHO05D004858 1.5e-52 210.7 278 42.8
Cfa009107 Carpinus fangiana HOM05D003615 ORTHO05D004858 1.9e-52 210.3 276 44.9
CiPaw.05G146700 Carya illinoinensis HOM05D003615 ORTHO05D004858 9.5e-52 208.0 278 41.4
COL.COLO4_36979 Corchorus olitorius HOM05D003615 ORTHO05D004858 2.0e-49 200.3 275 42.2
QL03p061724 Quercus lobata HOM05D003615 ORTHO05D004858 1.3e-48 197.6 277 43.0
TPR.G29246 Trifolium pratense HOM05D003615 ORTHO05D004858 1.1e-47 194.5 276 42.8
Duzib251G0695 Durio zibethinus HOM05D003615 ORTHO05D004858 4.1e-47 192.6 276 38.4
Prupe.1G255400 Prunus persica HOM05D003615 ORTHO05D004858 1.1e-42 177.9 277 38.6
RcHm_v2.0_Chr4g0444081 Rosa chinensis HOM05D003615 ORTHO05D004858 1.8e-42 177.2 276 41.3
Lalb_Chr07g0185251 Lupinus albus HOM05D003615 ORTHO05D004858 3.1e-42 176.4 122 72.1
FAN17G0861 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.3e-40 171.0 286 39.2
Prupe.1G255600 Prunus persica HOM05D003615 ORTHO05D004858 2.9e-40 169.9 271 38.4
FAN22G0583 Fragaria x ananassa HOM05D003615 ORTHO05D004858 8.3e-40 168.3 286 38.5
MD16G1090600 Malus domestica HOM05D003615 ORTHO05D004858 8.3e-40 168.3 282 37.6
Prupe.1G255700 Prunus persica HOM05D003615 ORTHO05D004858 8.3e-40 168.3 283 36.4
TAR629G1076 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.1e-39 167.9 285 39.3
TAR374G0689 Trochodendron aralioides HOM05D003615 ORTHO05D004858 2.4e-39 166.8 281 36.3
FvH4_4g34710 Fragaria vesca HOM05D003615 ORTHO05D004858 3.2e-39 166.4 286 37.4
FAN12G0428 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.2e-39 166.4 286 37.4
TAR629G2286 Trochodendron aralioides HOM05D003615 ORTHO05D004858 1.2e-38 164.5 284 38.4
Actinidia15034 Actinidia chinensis HOM05D003615 ORTHO05D004858 3.5e-38 162.9 206 45.1
Thecc.02G244900 Theobroma cacao HOM05D003615 ORTHO05D004858 1.7e-37 160.6 288 36.1
MD13G1090000 Malus domestica HOM05D003615 ORTHO05D004858 3.0e-37 159.8 282 35.1
FAN22G1692 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.2e-35 154.5 275 37.1
CiPaw.06G074200 Carya illinoinensis HOM05D003615 ORTHO05D004858 2.1e-35 153.7 280 37.5
Eucgr.B03352 Eucalyptus grandis HOM05D003615 ORTHO05D004858 3.6e-35 152.9 286 35.7
Duzib268G1684 Durio zibethinus HOM05D003615 ORTHO05D004858 4.7e-35 152.5 289 36.0
Gorai.012G171300 Gossypium raimondii HOM05D003615 ORTHO05D004858 4.7e-35 152.5 287 34.5
Eucgr.B03351 Eucalyptus grandis HOM05D003615 ORTHO05D004858 6.2e-35 152.1 285 36.1
Gohir.A04G135100 Gossypium hirsutum HOM05D003615 ORTHO05D004858 1.8e-34 150.6 287 34.5
CANSAT01G1820 Cannabis sativa HOM05D003615 ORTHO05D004858 6.8e-34 148.7 284 37.0
FvH4_4g34740 Fragaria vesca HOM05D003615 ORTHO05D004858 6.8e-34 148.7 226 39.4
Aqoxy3G03028 Aquilegia oxysepala HOM05D003615 ORTHO05D004858 8.9e-34 148.3 280 35.4
Gohir.D04G178200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 1.5e-33 147.5 287 33.8
Rhsim12G0121500 Rhododendron simsii HOM05D002725 ORTHO05D003279 3.4e-33 146.4 279 36.6
FAN12G2508 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.2e-32 143.7 229 38.4
FAN07G2164 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.1e-31 141.4 277 35.0
RcHm_v2.0_Chr3g0476381 Rosa chinensis HOM05D003615 ORTHO05D004858 1.4e-31 141.0 276 35.9
FAN02G2149 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.4e-31 140.2 213 40.8
RcHm_v2.0_Chr4g0444101 Rosa chinensis HOM05D003615 ORTHO05D004858 9.2e-31 138.3 276 34.8
FvH4_6g20500 Fragaria vesca HOM05D003615 ORTHO05D004858 1.6e-30 137.5 278 34.9
FAN14G2568 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.7e-30 136.7 221 39.4
FAN16G0215 Fragaria x ananassa HOM05D003615 ORTHO05D004858 2.7e-30 136.7 229 37.6
FvH4_3g33230 Fragaria vesca HOM05D003615 ORTHO05D004858 3.5e-30 136.3 218 39.4
Potri.006G262900 Populus trichocarpa HOM05D003615 ORTHO05D004858 4.7e-27 125.9 222 36.9
Hma1.2p1_0697F.1_g204790 Hydrangea macrophylla HOM05D003615 ORTHO05D004858 1.1e-26 124.8 287 32.1
FAN17G1254 Fragaria x ananassa HOM05D003615 ORTHO05D022686 3.1e-26 123.2 283 31.4
FvH4_6g20520 Fragaria vesca HOM05D003615 ORTHO05D004858 9.0e-26 121.7 204 38.2
FAN14G3971 Fragaria x ananassa HOM05D003615 ORTHO05D004858 9.0e-26 121.7 190 40.0
BcaB07g32357 Brassica carinata HOM05D003615 ORTHO05D004858 1.2e-25 121.3 302 31.1
Dinv35046 Davidia involucrata HOM05D003615 ORTHO05D004858 2.0e-25 120.6 220 40.0
Duzib147G1418 Durio zibethinus HOM05D003615 ORTHO05D004858 4.4e-25 119.4 283 33.6
CiPaw.06G074300 Carya illinoinensis HOM05D003615 ORTHO05D004858 5.8e-25 119.0 280 31.4
Nn4g22826 Nelumbo nucifera HOM05D003615 ORTHO05D004858 5.8e-25 119.0 233 35.6
Thecc.04G007200 Theobroma cacao HOM05D003615 ORTHO05D004858 7.6e-25 118.6 281 33.5
PGR119G0743 Punica granatum HOM05D003615 ORTHO05D004858 1.7e-24 117.5 246 34.1
C05p23000 Brassica napus HOM05D003615 ORTHO05D004858 2.9e-24 116.7 277 32.1
BcaC05g26288 Brassica carinata HOM05D003615 ORTHO05D004858 6.4e-24 115.5 280 32.1
GSVIVG01004279001 Vitis vinifera HOM05D003615 ORTHO05D004858 1.1e-23 114.8 217 35.9
Eucgr.I01826 Eucalyptus grandis HOM05D003615 ORTHO05D004858 5.4e-23 112.5 222 34.2
FAN05G3998 Fragaria x ananassa HOM05D003615 ORTHO05D004858 9.3e-23 111.7 176 39.8
CARHR024230 Cardamine hirsuta HOM05D003615 ORTHO05D004858 1.6e-22 110.9 319 31.0
COL.COLO4_04783 Corchorus olitorius HOM05D003615 ORTHO05D004858 1.6e-22 110.9 277 31.4
Rhsim10G0023500 Rhododendron simsii HOM05D003615 ORTHO05D004858 2.1e-22 110.5 279 32.6
Rhsim10G0023900 Rhododendron simsii HOM05D003615 ORTHO05D004858 2.1e-22 110.5 285 33.3
BraA09t39593Z Brassica rapa HOM05D003615 ORTHO05D004858 6.0e-22 109.0 274 29.9
Ciclev10001867m.g Citrus clementina HOM05D003615 ORTHO05D004858 6.0e-22 109.0 276 30.4
Sabra06G0205200 Salix brachista HOM05D000330 ORTHO05D004858 7.8e-22 108.6 285 30.9
CANSAT01G3275 Cannabis sativa HOM05D003615 ORTHO05D004858 1.3e-21 107.8 194 35.6
Eucgr.B03350 Eucalyptus grandis HOM05D003615 ORTHO05D004858 2.3e-21 107.1 275 29.8
CARHR024240 Cardamine hirsuta HOM05D003615 ORTHO05D004858 3.9e-21 106.3 271 29.9
AL1G37580 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 1.5e-20 104.4 261 33.0
Carub.0001s2334 Capsella rubella HOM05D003615 ORTHO05D004858 1.5e-20 104.4 270 28.9
AL1G37600 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 1.9e-20 104.0 273 30.4
COL.COLO4_36978 Corchorus olitorius HOM05D003615 ORTHO05D004858 2.5e-20 103.6 115 45.2
Eucgr.I01825 Eucalyptus grandis HOM05D003615 ORTHO05D004858 2.5e-20 103.6 220 33.2
C05p23050 Brassica napus HOM05D003615 ORTHO05D004858 4.3e-20 102.8 313 29.7
Gorai.012G060600 Gossypium raimondii HOM05D003615 ORTHO05D004858 4.3e-20 102.8 281 31.7
BolC5t30999H Brassica oleracea HOM05D003615 ORTHO05D004858 7.3e-20 102.1 328 30.5
AT1G23830 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 2.1e-19 100.5 258 32.6
A07p13760 Brassica napus HOM05D003615 ORTHO05D004858 2.1e-19 100.5 258 30.6
Atru.chr6.2153 Acer truncatum HOM05D003615 ORTHO05D004858 2.8e-19 100.1 214 36.0
Gohir.D04G054000 Gossypium hirsutum HOM05D003615 ORTHO05D004858 8.1e-19 98.6 281 31.3
Gohir.A05G360200 Gossypium hirsutum HOM05D003615 ORTHO05D004858 1.1e-18 98.2 281 31.7
A09p40990 Brassica napus HOM05D003615 ORTHO05D004858 1.8e-18 97.4 187 34.8
C07p20230 Brassica napus HOM05D003615 ORTHO05D004858 4.0e-18 96.3 259 30.1
BraA07t29125Z Brassica rapa HOM05D003615 ORTHO05D004858 4.0e-18 96.3 259 29.7
AT1G23850 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 5.3e-18 95.9 271 28.4
BolC7t42544H Brassica oleracea HOM05D003615 ORTHO05D004858 5.3e-18 95.9 259 30.1
ClCG10G014370 Citrullus lanatus HOM05D003615 ORTHO05D004858 5.3e-18 95.9 239 31.4
THA.LOC104822136 Tarenaya hassleriana HOM05D003615 ORTHO05D004858 6.9e-18 95.5 254 30.7
BcaB03g14133 Brassica carinata HOM05D003615 ORTHO05D004858 1.5e-17 94.4 257 30.0
BcaC06g35055 Brassica carinata HOM05D003615 ORTHO05D004858 2.0e-17 94.0 259 30.1
Sed0019217 Sechium edule HOM05D003615 ORTHO05D004858 2.0e-17 94.0 263 28.9
AUR62005358 Chenopodium quinoa HOM05D003615 ORTHO05D004858 2.6e-17 93.6 236 30.5
CsaV3_3G042230 Cucumis sativus L. HOM05D003615 ORTHO05D004858 4.5e-17 92.8 281 28.5
Sp1g21200 Schrenkiella parvula HOM05D003615 ORTHO05D004858 7.6e-17 92.0 262 31.7
TAR622G0247 Trochodendron aralioides HOM05D003615 ORTHO05D004858 7.6e-17 92.0 224 31.2
Hund05979 Selenicereus undatus HOM05D003615 ORTHO05D004858 1.7e-16 90.9 177 37.3
AUR62014008 Chenopodium quinoa HOM05D002682 ORTHO05D002878 3.8e-16 89.7 207 33.3
MELO3C009942.2 Cucumis melo HOM05D003615 ORTHO05D004858 3.8e-16 89.7 249 30.5
AT1G23840 Arabidopsis thaliana HOM05D003615 ORTHO05D004858 8.4e-16 88.6 259 31.3
CARHR024250 Cardamine hirsuta HOM05D003615 ORTHO05D004858 1.1e-15 88.2 254 30.3
FAN09G2044 Fragaria x ananassa HOM05D003615 ORTHO05D004858 1.4e-15 87.8 276 27.2
EL10Ac6g13654 Beta vulgaris HOM05D003615 ORTHO05D004858 2.4e-15 87.0 116 42.2
MELO3C009943.2 Cucumis melo HOM05D003615 ORTHO05D004858 3.2e-15 86.7 286 27.3
Ca_17751_v3 Cicer arietinum L. HOM05D002693 ORTHO05D007571 4.2e-15 86.3 191 35.6
Ah.03g132550 Amaranthus hybridus HOM05D003615 ORTHO05D004858 7.1e-15 85.5 254 31.9
Carub.0001s2333 Capsella rubella HOM05D003615 ORTHO05D004858 7.1e-15 85.5 241 30.3
TAR622G1321 Trochodendron aralioides HOM05D003615 ORTHO05D004858 7.1e-15 85.5 224 30.4
Ah.03g132560 Amaranthus hybridus HOM05D003615 ORTHO05D004858 1.6e-14 84.3 205 31.2
AUR62005356 Chenopodium quinoa HOM05D003615 ORTHO05D004858 2.7e-14 83.6 129 38.8
ClCG10G014380 Citrullus lanatus HOM05D003615 ORTHO05D004858 2.7e-14 83.6 250 27.2
CsaV3_3G042210 Cucumis sativus L. HOM05D003615 ORTHO05D004858 2.7e-14 83.6 242 28.1
Dinv24874 Davidia involucrata HOM05D003615 ORTHO05D004858 3.5e-14 83.2 101 45.5
Thhalv10008195m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 4.6e-14 82.8 279 28.3
AUR62014009 Chenopodium quinoa HOM05D003615 ORTHO05D004858 6.0e-14 82.4 121 40.5
Eucgr.B03353 Eucalyptus grandis HOM05D003615 ORTHO05D015110 1.8e-13 80.9 227 31.7
AUR62014010 Chenopodium quinoa HOM05D003615 ORTHO05D004858 2.3e-13 80.5 292 28.4
Thhalv10009999m.g Eutrema salsugineum HOM05D003615 ORTHO05D004858 2.3e-13 80.5 261 30.3
FAN11G1076 Fragaria x ananassa HOM05D003615 ORTHO05D004858 3.9e-13 79.7 144 36.1
C07p20220 Brassica napus HOM05D003615 ORTHO05D004858 8.7e-13 78.6 245 27.8
Duzib251G0647 Durio zibethinus HOM05D003615 ORTHO05D004858 1.5e-12 77.8 109 41.3
BcaC06g35057 Brassica carinata HOM05D003615 ORTHO05D004858 2.1e-11 73.9 179 31.3
Atru.chr6.2186 Acer truncatum HOM05D003615 ORTHO05D004858 2.4e-10 70.5 203 29.6
MD16G1090500 Malus domestica HOM05D003615 ORTHO05D004858 4.0e-10 69.7 143 36.4
Thecc.02G244700 Theobroma cacao HOM05D003615 ORTHO05D004858 5.3e-10 69.3 278 21.2
AL1G37590 Arabidopsis lyrata HOM05D003615 ORTHO05D004858 9.0e-10 68.6 191 28.8
PGR142G2932 Punica granatum HOM05D003615 ORTHO05D004858 1.2e-09 68.2 86 44.2
TAR374G0412 Trochodendron aralioides HOM05D002682 ORTHO05D002878 8.4e-08 62.0 131 32.8
BolC5t31001H Brassica oleracea HOM05D003615 ORTHO05D016696 1.4e-07 61.2 85 34.1
Sed0025994 Sechium edule HOM05D000122 ORTHO05D000139 1.4e-07 61.2 218 27.5
Sopen02g010120 Solanum pennellii HOM05D001062 ORTHO05D000884 1.4e-07 61.2 235 28.9
Solyc02g031830.1 Solanum lycopersicum HOM05D001062 ORTHO05D000884 1.9e-07 60.8 235 28.9
PGSC0003DMG400017863 Solanum tuberosum HOM05D001062 ORTHO05D000884 1.9e-07 60.8 233 28.8
Nitab4.5_0000138g0060 Nicotiana tabacum HOM05D001062 ORTHO05D000884 1.6e-06 57.8 235 28.5
Nitab4.5_0010569g0010 Nicotiana tabacum HOM05D001062 ORTHO05D000884 2.1e-06 57.4 235 28.5
BcaC05g26284 Brassica carinata HOM05D003615 ORTHO05D004858 2.7e-06 57.0 92 37.0
Peaxi162Scf00198g00075 Petunia axillaris HOM05D001062 ORTHO05D000884 3.5e-06 56.6 123 30.9
Medtr4g096890 Medicago truncatula HOM05D001062 ORTHO05D000884 4.6e-06 56.2 275 25.1
CSS0030846 Camellia sinensis var. sinensis HOM05D001062 ORTHO05D000884 6.0e-06 55.8 259 25.9
Sed0024381 Sechium edule HOM05D001062 ORTHO05D000884 7.9e-06 55.5 213 25.4


User provided reference genes

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