Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G256100 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 8.7e-57 223.4 112 100.0
VMungo0251G0963 Vigna mungo HOM05D004626 ORTHO05D005185 4.5e-45 184.5 110 85.5
Glyma.05G178600 Glycine max HOM05D004626 ORTHO05D005185 3.6e-42 174.9 110 80.0
Glyma.08G135700 Glycine max HOM05D004626 ORTHO05D005185 6.7e-41 170.6 110 80.0
Lj4g0016107 Lotus japonicus HOM05D004626 ORTHO05D005185 3.2e-27 125.2 107 58.9
Duzib264G0371 Durio zibethinus HOM05D004626 ORTHO05D005185 6.7e-25 117.5 109 57.8
TPR.G6292 Trifolium pratense HOM05D004626 ORTHO05D005185 6.7e-25 117.5 114 55.3
Cpa.g.sc974.3 Carica papaya HOM05D004626 ORTHO05D005185 2.0e-24 115.9 105 56.2
Cc07_g15200 Coffea canephora HOM05D004626 ORTHO05D005185 2.6e-24 115.5 103 58.3
Dinv21908 Davidia involucrata HOM05D004626 ORTHO05D005185 3.3e-24 115.2 103 57.3
MD01G1030100 Malus domestica HOM05D004626 ORTHO05D005185 5.7e-24 114.4 104 56.7
Manes.12G134800 Manihot esculenta HOM05D004626 ORTHO05D005185 5.7e-24 114.4 93 63.4
MELO3C018951.2 Cucumis melo HOM05D004626 ORTHO05D005185 9.7e-24 113.6 103 57.3
MD15G1324000 Malus domestica HOM05D004626 ORTHO05D005185 9.7e-24 113.6 104 55.8
Thecc.01G101400 Theobroma cacao HOM05D004626 ORTHO05D005185 9.7e-24 113.6 109 56.0
Ciclev10026391m.g Citrus clementina HOM05D004626 ORTHO05D005185 1.7e-23 112.8 93 61.3
COL.COLO4_09965 Corchorus olitorius HOM05D004626 ORTHO05D005185 1.7e-23 112.8 93 61.3
Nn2g14516 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.7e-23 112.8 103 56.3
Psat5g090160 Pisum sativum HOM05D004626 ORTHO05D005185 1.7e-23 112.8 103 57.3
CiPaw.03G141900 Carya illinoinensis HOM05D004626 ORTHO05D005185 2.2e-23 112.5 109 56.0
Cfa002662 Carpinus fangiana HOM05D004626 ORTHO05D005185 2.8e-23 112.1 102 55.9
Haze_24931 Corylus avellana HOM05D004626 ORTHO05D005185 2.8e-23 112.1 102 55.9
Ca_16525_v3 Cicer arietinum L. HOM05D004626 ORTHO05D005185 3.7e-23 111.7 103 57.3
Dinv13189 Davidia involucrata HOM05D004626 ORTHO05D005185 3.7e-23 111.7 103 55.3
Prupe.6G187100 Prunus persica HOM05D004626 ORTHO05D005185 3.7e-23 111.7 100 59.0
MBI05_g19353_MAGBIO Magnolia biondii HOM05D004626 ORTHO05D005185 4.8e-23 111.3 101 57.4
CANSAT01G3216 Cannabis sativa HOM05D004626 ORTHO05D005185 6.3e-23 110.9 93 61.3
ClCG10G009000 Citrullus lanatus HOM05D004626 ORTHO05D005185 6.3e-23 110.9 101 57.4
Duzib147G1109 Durio zibethinus HOM05D004626 ORTHO05D005185 6.3e-23 110.9 109 55.0
GSVIVG01002466001 Vitis vinifera HOM05D004626 ORTHO05D005185 6.3e-23 110.9 97 58.8
TPR.G17855 Trifolium pratense HOM05D004626 ORTHO05D005185 8.2e-23 110.5 101 57.4
Oeu056607.1 Olea europaea HOM05D004626 ORTHO05D005185 1.1e-22 110.2 103 55.3
TWI53G1689 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.1e-22 110.2 109 55.0
TWI77G0829 Tripterygium wilfordii HOM05D004626 ORTHO05D005185 1.1e-22 110.2 109 55.0
TAR628G0369 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.1e-22 110.2 101 57.4
CsaV3_4G008860 Cucumis sativus L. HOM05D004626 ORTHO05D005185 1.4e-22 109.8 103 55.3
Nitab4.5_0000004g0320 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.4e-22 109.8 103 55.3
Nitab4.5_0003026g0030 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.4e-22 109.8 103 55.3
Actinidia28864 Actinidia chinensis HOM05D004626 ORTHO05D005185 1.8e-22 109.4 103 54.4
Gohir.D11G221600 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.8e-22 109.4 93 60.2
Nitab4.5_0002169g0010 Nicotiana tabacum HOM05D004626 ORTHO05D005185 1.8e-22 109.4 103 55.3
Sed0012532 Sechium edule HOM05D004626 ORTHO05D005185 1.8e-22 109.4 108 54.6
CDE10G0605 Ceratophyllum demersum HOM05D004626 ORTHO05D005185 2.4e-22 109.0 103 53.4
Gorai.007G238600 Gossypium raimondii HOM05D004626 ORTHO05D005185 2.4e-22 109.0 93 60.2
Medtr8g090225 Medicago truncatula HOM05D004626 ORTHO05D005185 2.4e-22 109.0 106 56.6
Gohir.A11G201300 Gossypium hirsutum HOM05D004626 ORTHO05D005185 3.1e-22 108.6 93 59.1
Phvul.008G217800 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.1e-22 108.6 102 55.9
Phvul.L001740 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.1e-22 108.6 102 55.9
Phvul.L002040 Phaseolus vulgaris HOM05D004626 ORTHO05D005185 3.1e-22 108.6 102 55.9
VMungo0647G0150 Vigna mungo HOM05D004626 ORTHO05D005185 3.1e-22 108.6 109 52.3
Hund13624 Selenicereus undatus HOM05D004626 ORTHO05D005185 4.1e-22 108.2 102 54.9
CSS0038413 Camellia sinensis var. sinensis HOM05D004626 ORTHO05D005185 5.3e-22 107.8 103 54.4
SEGI_37892 Sequoiadendron giganteum HOM05D004626 ORTHO05D005185 5.3e-22 107.8 103 56.3
Lj6g0027398 Lotus japonicus HOM05D004626 ORTHO05D005185 7.0e-22 107.5 103 54.4
CAN.G222.27 Capsicum annuum HOM05D004626 ORTHO05D005185 9.1e-22 107.1 103 54.4
Lsat_1_v5_gn_4_141400 Lactuca sativa HOM05D004626 ORTHO05D005185 9.1e-22 107.1 103 54.4
TPR.G17173 Trifolium pratense HOM05D004626 ORTHO05D005185 1.2e-21 106.7 90 61.1
TAR381G1723 Trochodendron aralioides HOM05D004626 ORTHO05D005185 1.2e-21 106.7 101 56.4
Aqoxy6G00796 Aquilegia oxysepala HOM05D004626 ORTHO05D005185 1.6e-21 106.3 100 57.0
DCAR_014224 Daucus carota HOM05D004626 ORTHO05D005185 1.6e-21 106.3 103 53.4
Lalb_Chr12g0203831 Lupinus albus HOM05D004626 ORTHO05D005185 1.6e-21 106.3 99 57.6
RcHm_v2.0_Chr2g0113491 Rosa chinensis HOM05D004626 ORTHO05D005185 1.6e-21 106.3 102 53.9
Solyc11g011140.2 Solanum lycopersicum HOM05D004626 ORTHO05D005185 1.6e-21 106.3 103 53.4
Sopen11g005900 Solanum pennellii HOM05D004626 ORTHO05D005185 1.6e-21 106.3 103 53.4
MSTRG.2568 Avicennia marina HOM05D004626 ORTHO05D005185 2.0e-21 105.9 103 52.4
Eucgr.I00432 Eucalyptus grandis HOM05D004626 ORTHO05D005185 2.0e-21 105.9 103 54.4
Hund16286 Selenicereus undatus HOM05D004626 ORTHO05D005185 2.0e-21 105.9 102 53.9
HanXRQChr10g0305361 Helianthus annuus HOM05D004626 ORTHO05D005185 2.6e-21 105.5 103 53.4
PSO541G2613 Papaver somniferum HOM05D004626 ORTHO05D005185 2.6e-21 105.5 96 56.2
PSO781G0234 Papaver somniferum HOM05D004626 ORTHO05D005185 2.6e-21 105.5 96 56.2
ECA232G0540 Erigeron canadensis HOM05D004626 ORTHO05D001353 3.5e-21 105.1 103 53.4
PGR102G1283 Punica granatum HOM05D004626 ORTHO05D005185 4.5e-21 104.8 100 56.0
QL06p049512 Quercus lobata HOM05D004626 ORTHO05D005185 4.5e-21 104.8 93 58.1
TAR381G1658 Trochodendron aralioides HOM05D004626 ORTHO05D005185 4.5e-21 104.8 101 54.5
Ah.02g122510 Amaranthus hybridus HOM05D004626 ORTHO05D005185 5.9e-21 104.4 111 51.4
Migut.H02360 Erythranthe guttata HOM05D004626 ORTHO05D005185 5.9e-21 104.4 103 52.4
Glyma.18G017100 Glycine max HOM05D004626 ORTHO05D005185 5.9e-21 104.4 102 53.9
SHI34078 Sapria himalayana HOM05D004626 ORTHO05D005185 5.9e-21 104.4 91 59.3
Sc20g0005870 Simmondsia chinensis HOM05D004626 ORTHO05D005185 5.9e-21 104.4 93 57.0
SGA_v2.0_scaffold111G31515 Striga asiatica HOM05D004626 ORTHO05D005185 7.7e-21 104.0 103 51.5
Lalb_Chr11g0075381 Lupinus albus HOM05D004626 ORTHO05D005185 1.0e-20 103.6 100 54.0
ATR0693G394 Amborella trichopoda HOM05D004626 ORTHO05D005185 1.3e-20 103.2 101 53.5
Potri.005G075500 Populus trichocarpa HOM05D004626 ORTHO05D005185 1.7e-20 102.8 91 59.3
Sabra05G0062000 Salix brachista HOM05D004626 ORTHO05D005185 1.7e-20 102.8 94 59.6
SGA_v2.0_scaffold54G19499 Striga asiatica HOM05D004626 ORTHO05D005185 2.2e-20 102.4 99 53.5
EL10Ac6g15105 Beta vulgaris HOM05D004626 ORTHO05D005185 2.9e-20 102.1 111 51.4
AUR62002008 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.9e-20 102.1 102 52.0
AUR62003794 Chenopodium quinoa HOM05D004626 ORTHO05D005185 2.9e-20 102.1 102 52.0
BcaNung06392 Brassica carinata HOM05D004626 ORTHO05D005185 3.8e-20 101.7 104 51.0
A01p00780 Brassica napus HOM05D004626 ORTHO05D005185 3.8e-20 101.7 104 51.0
BraA01t00081Z Brassica rapa HOM05D004626 ORTHO05D005185 3.8e-20 101.7 104 51.0
Thhalv10026378m.g Eutrema salsugineum HOM05D004626 ORTHO05D005185 3.8e-20 101.7 104 51.0
FAN19G0994 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.8e-20 101.7 102 51.0
FAN23G0429 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.8e-20 101.7 102 51.0
FAN26G0520 Fragaria x ananassa HOM05D004626 ORTHO05D005185 3.8e-20 101.7 102 51.0
Nitab4.5_0012380g0020 Nicotiana tabacum HOM05D004626 ORTHO05D005185 3.8e-20 101.7 93 57.0
Sp7g36010 Schrenkiella parvula HOM05D004626 ORTHO05D005185 3.8e-20 101.7 104 51.0
THA.LOC104807692 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 3.8e-20 101.7 112 50.0
HPP92_019309 Vanilla planifolia HOM05D004626 ORTHO05D005185 3.8e-20 101.7 93 52.7
VMungo1383G1685 Vigna mungo HOM05D004626 ORTHO05D005185 3.8e-20 101.7 77 64.9
Aa31LG6G15380 Aethionema arabicum HOM05D004626 ORTHO05D005185 5.0e-20 101.3 104 50.0
Cfa005597 Carpinus fangiana HOM05D004626 ORTHO05D005185 5.0e-20 101.3 103 51.5
Atru.chr4.63 Acer truncatum HOM05D004626 ORTHO05D005185 6.5e-20 100.9 103 50.5
arahy.Tifrunner.gnm1.ann1.ZXJH7W Arachis hypogaea HOM05D004626 ORTHO05D005185 6.5e-20 100.9 108 51.9
Medtr3g087190 Medicago truncatula HOM05D004626 ORTHO05D005185 6.5e-20 100.9 103 50.5
Sc16g0005030 Simmondsia chinensis HOM05D004626 ORTHO05D005185 6.5e-20 100.9 93 55.9
arahy.Tifrunner.gnm1.ann1.IYB3ER Arachis hypogaea HOM05D004626 ORTHO05D005185 8.5e-20 100.5 108 51.9
BcaNung00909 Brassica carinata HOM05D004626 ORTHO05D005185 8.5e-20 100.5 104 50.0
BcaNung02302 Brassica carinata HOM05D004626 ORTHO05D005185 8.5e-20 100.5 104 49.0
C01p00890 Brassica napus HOM05D004626 ORTHO05D005185 8.5e-20 100.5 104 50.0
Rhsim08G0010500 Rhododendron simsii HOM05D004626 ORTHO05D005185 1.1e-19 100.1 103 51.5
FvH4_1g20880 Fragaria vesca HOM05D004626 ORTHO05D005185 1.5e-19 99.8 102 50.0
A03p65840 Brassica napus HOM05D004626 ORTHO05D005185 1.9e-19 99.4 104 49.0
BolC1t00090H Brassica oleracea HOM05D004626 ORTHO05D005185 1.9e-19 99.4 104 50.0
BraA03t15636Z Brassica rapa HOM05D004626 ORTHO05D005185 1.9e-19 99.4 104 49.0
CARHR246820 Cardamine hirsuta HOM05D004626 ORTHO05D005185 1.9e-19 99.4 104 50.0
BcaNung03404 Brassica carinata HOM05D004626 ORTHO05D005185 2.5e-19 99.0 104 49.0
C07p62810 Brassica napus HOM05D004626 ORTHO05D005185 2.5e-19 99.0 104 49.0
BolC7t46695H Brassica oleracea HOM05D004626 ORTHO05D005185 2.5e-19 99.0 104 49.0
Pp3c1_13270 Physcomitrium patens HOM05D004626 ORTHO05D005185 2.5e-19 99.0 95 55.8
AT4G39880 Arabidopsis thaliana HOM05D004626 ORTHO05D005185 4.2e-19 98.2 104 50.0
Hma1.2p1_0308F.1_g120190 Hydrangea macrophylla HOM05D004626 ORTHO05D005185 4.2e-19 98.2 91 56.0
AL7G12120 Arabidopsis lyrata HOM05D004626 ORTHO05D005185 5.5e-19 97.8 104 50.0
unitig_749.g13443 Utricularia gibba HOM05D004626 ORTHO05D005185 5.5e-19 97.8 102 51.0
Carub.0007s0181 Capsella rubella HOM05D004626 ORTHO05D005185 9.4e-19 97.1 104 49.0
Lalb_Chr22g0353781 Lupinus albus HOM05D004626 ORTHO05D005185 2.1e-18 95.9 72 63.9
QL11p020935 Quercus lobata HOM05D004626 ORTHO05D005185 2.7e-18 95.5 95 52.6
QL11p021166 Quercus lobata HOM05D004626 ORTHO05D005185 2.7e-18 95.5 95 52.6
CiPaw.05G035400 Carya illinoinensis HOM05D004626 ORTHO05D005185 4.7e-18 94.7 101 52.5
Lj4A891T55 Lonicera japonica HOM05D004626 ORTHO05D005185 6.1e-18 94.4 110 48.2
THA.LOC104818439 Tarenaya hassleriana HOM05D004626 ORTHO05D005185 6.1e-18 94.4 101 51.5
Zm00001eb120260 Zea mays HOM05D004626 ORTHO05D005185 6.1e-18 94.4 94 51.1
Mapoly0065s0037 Marchantia polymorpha HOM05D004626 ORTHO05D005185 8.0e-18 94.0 105 48.6
Os07g0415200 Oryza sativa ssp. japonica HOM05D004626 ORTHO05D005185 1.0e-17 93.6 91 53.8
arahy.Tifrunner.gnm1.ann1.VCFG2H Arachis hypogaea HOM05D004626 ORTHO05D005185 4.0e-17 91.7 93 53.8
MD06G1167700 Malus domestica HOM05D004626 ORTHO05D005185 5.2e-17 91.3 105 47.6
Nitab4.5_0000308g0400 Nicotiana tabacum HOM05D004626 ORTHO05D005185 6.3e-15 84.3 69 59.4
FAN28G0327 Fragaria x ananassa HOM05D004626 ORTHO05D005185 1.1e-14 83.6 78 55.1
AagrBONN_evm.TU.Sc2ySwM_117.40 Anthoceros agrestis HOM05D004626 ORTHO05D005185 2.4e-14 82.4 87 49.4
DCAR_001782 Daucus carota HOM05D004626 ORTHO05D005185 2.4e-14 82.4 70 57.1
Peaxi162Scf00611g00021 Petunia axillaris HOM05D004626 ORTHO05D005185 2.4e-14 82.4 69 58.0
vmacro18600 Vaccinium macrocarpon HOM05D004626 ORTHO05D005185 3.5e-13 78.6 59 64.4
Ciclev10029799m.g Citrus clementina HOM05D004626 ORTHO05D005185 5.5e-11 71.2 81 50.6
Nitab4.5_0006375g0050 Nicotiana tabacum HOM05D004626 ORTHO05D005185 7.2e-11 70.9 79 51.9
SalBow3G4134 Salvia bowleyana HOM05D004626 ORTHO05D005185 6.8e-09 64.3 57 49.1
SMO134G0295 Selaginella moellendorffii HOM05D004626 ORTHO05D005185 8.8e-09 63.9 93 39.8
Medtr3g079680 Medicago truncatula HOM05D004626 ORTHO05D005185 1.7e-07 59.7 86 37.2
MCO11G885 Micromonas commoda HOM05D004626 ORTHO05D005185 1.1e-06 57.0 73 41.1
Nn1g04969 Nelumbo nucifera HOM05D004626 ORTHO05D005185 1.1e-06 57.0 103 37.9
Gohir.A02G143100 Gossypium hirsutum HOM05D004626 ORTHO05D005185 1.8e-06 56.2 57 52.6
Gohir.D03G037250 Gossypium hirsutum HOM05D004626 ORTHO05D005185 5.4e-06 54.7 60 50.0


User provided reference genes

Program Settings