Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G255800 Phaseolus vulgaris HOM05D004872 ORTHO05D006050 3.7e-100 368.2 189 100.0
VMungo0251G0214 Vigna mungo HOM05D004872 ORTHO05D006050 3.4e-77 292.0 182 86.3
Glyma.01G027700 Glycine max HOM05D004872 ORTHO05D006050 8.3e-76 287.3 182 83.0
Glyma.08G136100 Glycine max HOM05D004872 ORTHO05D006050 9.5e-72 273.9 182 80.8
TPR.G29301 Trifolium pratense HOM05D004872 ORTHO05D006050 1.1e-62 243.8 187 71.1
arahy.Tifrunner.gnm1.ann1.U00P2R Arachis hypogaea HOM05D004872 ORTHO05D006050 4.4e-61 238.4 182 70.9
arahy.Tifrunner.gnm1.ann1.EX2XSN Arachis hypogaea HOM05D004872 ORTHO05D006050 9.8e-61 237.3 182 70.3
TPR.G26917 Trifolium pratense HOM05D004872 ORTHO05D006050 4.9e-60 235.0 187 67.9
Psat2g130480 Pisum sativum HOM05D004872 ORTHO05D006050 2.1e-58 229.6 185 68.6
Medtr7g096840 Medicago truncatula HOM05D004872 ORTHO05D006050 1.0e-57 227.3 185 68.6
arahy.Tifrunner.gnm1.ann1.K1U5S9 Arachis hypogaea HOM05D004872 ORTHO05D006050 3.0e-57 225.7 206 62.1
Lj6g0013181 Lotus japonicus HOM05D004872 ORTHO05D006050 3.6e-55 218.8 186 66.7
Lj6g0009628 Lotus japonicus HOM05D004872 ORTHO05D006050 5.2e-54 214.9 179 67.6
arahy.Tifrunner.gnm1.ann1.R4J47E Arachis hypogaea HOM05D004872 ORTHO05D006050 1.4e-51 206.8 194 59.8
Haze_23271 Corylus avellana HOM05D004500 ORTHO05D005775 1.4e-46 190.3 152 63.2
Lalb_Chr04g0249071 Lupinus albus HOM05D004872 ORTHO05D006050 1.8e-46 189.9 169 63.9
Cfa009914 Carpinus fangiana HOM05D004872 ORTHO05D006050 4.4e-45 185.3 153 62.1
QL01p016491 Quercus lobata HOM05D004872 ORTHO05D006050 1.1e-43 180.6 163 60.1
QL01p024148 Quercus lobata HOM05D004872 ORTHO05D006050 1.1e-43 180.6 163 60.1
CiPaw.14G110500 Carya illinoinensis HOM05D004872 ORTHO05D006050 3.2e-43 179.1 181 58.6
CiPaw.13G148000 Carya illinoinensis HOM05D004872 ORTHO05D006050 3.9e-41 172.2 181 55.8
Cpa.g.sc34.184 Carica papaya HOM05D004872 ORTHO05D006050 1.8e-38 163.3 176 52.8
TWI31G0308 Tripterygium wilfordii HOM05D004872 ORTHO05D006050 5.3e-38 161.8 182 52.7
Thecc.09G254600 Theobroma cacao HOM05D004872 ORTHO05D006050 1.2e-37 160.6 162 54.3
Manes.09G068000 Manihot esculenta HOM05D004872 ORTHO05D006050 1.5e-37 160.2 171 52.6
Dinv22205 Davidia involucrata HOM05D004872 ORTHO05D006050 3.4e-37 159.1 154 55.8
Duzib150G1163 Durio zibethinus HOM05D004872 ORTHO05D006050 3.4e-37 159.1 158 54.4
GSVIVG01037356001 Vitis vinifera HOM05D004872 ORTHO05D006050 3.4e-37 159.1 159 56.6
Ciclev10006059m.g Citrus clementina HOM05D004872 ORTHO05D006050 1.7e-36 156.8 146 58.2
Prupe.4G268800 Prunus persica HOM05D004872 ORTHO05D006050 1.4e-35 153.7 160 48.8
CANSAT54G2026 Cannabis sativa HOM05D004872 ORTHO05D006050 1.9e-35 153.3 160 54.4
Atru.chr4.2930 Acer truncatum HOM05D004872 ORTHO05D006050 2.4e-35 152.9 165 53.9
Prupe.7G012800 Prunus persica HOM05D004872 ORTHO05D006050 3.2e-35 152.5 163 50.3
RcHm_v2.0_Chr5g0046151 Rosa chinensis HOM05D004872 ORTHO05D006050 3.2e-35 152.5 174 48.3
Sabra13G0065000 Salix brachista HOM05D004872 ORTHO05D006050 4.2e-35 152.1 180 52.2
TAR633G0253 Trochodendron aralioides HOM05D004872 ORTHO05D006050 5.4e-35 151.8 175 52.6
Peaxi162Scf00025g02826 Petunia axillaris HOM05D004872 ORTHO05D006050 9.3e-35 151.0 143 55.2
COL.COLO4_24934 Corchorus olitorius HOM05D004872 ORTHO05D006050 2.7e-34 149.4 127 55.1
MSTRG.1742 Avicennia marina HOM05D004872 ORTHO05D006050 3.5e-34 149.1 182 48.9
Rhsim07G0167900 Rhododendron simsii HOM05D004872 ORTHO05D006050 3.5e-34 149.1 171 49.1
THA.LOC104816943 Tarenaya hassleriana HOM05D004872 ORTHO05D006050 1.3e-33 147.1 155 51.6
FAN25G2824 Fragaria x ananassa HOM05D004872 ORTHO05D006050 1.7e-33 146.7 192 45.3
Potri.013G075500 Populus trichocarpa HOM05D004872 ORTHO05D006050 1.7e-33 146.7 179 50.3
MD12G1010900 Malus domestica HOM05D004872 ORTHO05D006050 2.3e-33 146.4 172 47.7
Gohir.A09G108400 Gossypium hirsutum HOM05D004872 ORTHO05D006050 3.9e-33 145.6 140 55.0
DCAR_030961 Daucus carota HOM05D004872 ORTHO05D006050 6.6e-33 144.8 186 48.9
CSS0006428 Camellia sinensis var. sinensis HOM05D004872 ORTHO05D006050 8.7e-33 144.4 147 52.4
Eucgr.J02277 Eucalyptus grandis HOM05D004872 ORTHO05D006050 8.7e-33 144.4 140 57.9
FvH4_3g25170 Fragaria vesca HOM05D004872 ORTHO05D006050 1.5e-32 143.7 192 44.8
HanXRQChr08g0217181 Helianthus annuus HOM05D004872 ORTHO05D006050 1.5e-32 143.7 147 53.1
SGA_v2.0_scaffold144G35815 Striga asiatica HOM05D004872 ORTHO05D006050 1.5e-32 143.7 171 48.5
Lsat_1_v5_gn_3_110040 Lactuca sativa HOM05D004872 ORTHO05D006050 7.3e-32 141.4 183 49.2
ClCG02G022680 Citrullus lanatus HOM05D004872 ORTHO05D006050 2.1e-31 139.8 169 51.5
Manes.08G069866 Manihot esculenta HOM05D004872 ORTHO05D006050 4.8e-31 138.7 161 49.7
Gohir.D09G105300 Gossypium hirsutum HOM05D004872 ORTHO05D006050 6.2e-31 138.3 163 48.5
ECA233G5422 Erigeron canadensis HOM05D004872 ORTHO05D006050 8.1e-31 137.9 146 50.7
MELO3C014544.2 Cucumis melo HOM05D004872 ORTHO05D006050 1.1e-30 137.5 168 50.0
CsaV3_6G038800 Cucumis sativus L. HOM05D004872 ORTHO05D006050 1.1e-30 137.5 169 50.3
Migut.E01400 Erythranthe guttata HOM05D004872 ORTHO05D006050 1.4e-30 137.1 172 47.7
Thhalv10019047m.g Eutrema salsugineum HOM05D004872 ORTHO05D006050 1.4e-30 137.1 159 46.5
arahy.Tifrunner.gnm1.ann1.X2Q8UN Arachis hypogaea HOM05D004872 ORTHO05D006050 1.8e-30 136.7 163 53.4
Lsat_1_v5_gn_8_24740 Lactuca sativa HOM05D004872 ORTHO05D006050 2.4e-30 136.3 168 48.8
FAN11G3172 Fragaria x ananassa HOM05D004872 ORTHO05D006050 3.1e-30 136.0 144 52.8
SalBow1G8122 Salvia bowleyana HOM05D004872 ORTHO05D006050 3.1e-30 136.0 143 51.7
SalBow6G3136 Salvia bowleyana HOM05D004872 ORTHO05D006050 3.1e-30 136.0 153 51.0
Aa31LG1G26360 Aethionema arabicum HOM05D004872 ORTHO05D006050 4.0e-30 135.6 164 48.8
CAN.G1549.27 Capsicum annuum HOM05D004872 ORTHO05D006050 9.0e-30 134.4 167 46.7
Actinidia06989 Actinidia chinensis HOM05D004500 ORTHO05D005775 1.2e-29 134.0 112 61.6
Sp4g26910 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.5e-29 133.7 162 46.3
Nn2g15815 Nelumbo nucifera HOM05D004872 ORTHO05D006050 4.5e-29 132.1 176 48.9
Gorai.006G122300 Gossypium raimondii HOM05D004872 ORTHO05D006050 5.8e-29 131.7 164 47.0
PGSC0003DMG400003977 Solanum tuberosum HOM05D004872 ORTHO05D006050 5.8e-29 131.7 165 48.5
Cc11_g04500 Coffea canephora HOM05D004872 ORTHO05D006050 7.6e-29 131.3 180 47.2
BolC4t22211H Brassica oleracea HOM05D004872 ORTHO05D006050 1.7e-28 130.2 171 44.4
BcaB02g08868 Brassica carinata HOM05D004872 ORTHO05D006050 2.2e-28 129.8 150 47.3
Hma1.2p1_0299F.1_g117840 Hydrangea macrophylla HOM05D004872 ORTHO05D006050 2.2e-28 129.8 158 48.7
Nn8g39701 Nelumbo nucifera HOM05D004872 ORTHO05D006050 2.2e-28 129.8 177 51.4
Ah.04g159640 Amaranthus hybridus HOM05D004872 ORTHO05D006050 2.9e-28 129.4 155 48.4
Hund07423 Selenicereus undatus HOM05D004872 ORTHO05D006050 4.9e-28 128.6 143 53.8
AUR62006565 Chenopodium quinoa HOM05D004872 ORTHO05D006050 1.1e-27 127.5 140 51.4
Sc11g0003110 Simmondsia chinensis HOM05D004872 ORTHO05D006050 1.9e-27 126.7 160 46.9
HanXRQChr10g0315331 Helianthus annuus HOM05D004872 ORTHO05D006050 2.4e-27 126.3 179 45.3
Sed0007255 Sechium edule HOM05D004872 ORTHO05D006050 3.2e-27 125.9 145 51.0
BcaB02g10512 Brassica carinata HOM05D004872 ORTHO05D006050 5.4e-27 125.2 173 46.8
BcaC02g12267 Brassica carinata HOM05D004872 ORTHO05D006050 1.2e-26 124.0 142 47.2
C04p05820 Brassica napus HOM05D004872 ORTHO05D006050 1.2e-26 124.0 142 47.2
BraA05t19473Z Brassica rapa HOM05D004872 ORTHO05D006050 1.6e-26 123.6 142 48.6
AT2G44820 Arabidopsis thaliana HOM05D004872 ORTHO05D006050 2.7e-26 122.9 158 47.5
A05p04990 Brassica napus HOM05D004872 ORTHO05D006050 2.7e-26 122.9 176 44.3
AUR62000220 Chenopodium quinoa HOM05D004872 ORTHO05D006050 2.7e-26 122.9 179 45.3
Nitab4.5_0002138g0010 Nicotiana tabacum HOM05D004872 ORTHO05D006050 2.7e-26 122.9 161 46.0
Solyc11g005570.2 Solanum lycopersicum HOM05D004872 ORTHO05D006050 6.0e-26 121.7 146 47.3
Sopen11g001540 Solanum pennellii HOM05D004872 ORTHO05D006050 6.0e-26 121.7 146 47.3
CiPaw.13G148200 Carya illinoinensis HOM05D004872 ORTHO05D006050 1.8e-25 120.2 145 53.8
Sp2g10980 Schrenkiella parvula HOM05D004872 ORTHO05D006050 1.8e-25 120.2 158 44.9
AL4G43900 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 5.1e-25 118.6 159 45.3
EL10Ac4g10086 Beta vulgaris HOM05D004872 ORTHO05D006050 8.7e-25 117.9 145 46.9
Carub.0004s2739 Capsella rubella HOM05D004872 ORTHO05D006050 1.5e-24 117.1 166 44.0
BolC4t23202H Brassica oleracea HOM05D004872 ORTHO05D006050 2.5e-24 116.3 153 46.4
vmacro05825 Vaccinium macrocarpon HOM05D004872 ORTHO05D006050 3.3e-24 115.9 162 43.8
A05p12650 Brassica napus HOM05D004872 ORTHO05D006050 4.3e-24 115.5 156 45.5
PSO017G2452 Papaver somniferum HOM05D004872 ORTHO05D006050 4.3e-24 115.5 143 46.9
PSO017G5814 Papaver somniferum HOM05D004872 ORTHO05D006050 4.3e-24 115.5 143 46.9
PSO529G0002 Papaver somniferum HOM05D004872 ORTHO05D006050 4.3e-24 115.5 143 46.9
PSO591G0356 Papaver somniferum HOM05D004872 ORTHO05D006050 4.3e-24 115.5 143 46.9
PSO705G0001 Papaver somniferum HOM05D004872 ORTHO05D006050 4.3e-24 115.5 143 46.9
PSO541G2017 Papaver somniferum HOM05D004872 ORTHO05D006050 5.6e-24 115.2 144 46.5
CDE05G2894 Ceratophyllum demersum HOM05D004872 ORTHO05D006050 7.4e-24 114.8 162 41.4
MBI17_g09534_MAGBIO Magnolia biondii HOM05D004872 ORTHO05D006050 7.4e-24 114.8 153 45.8
PSO591G0248 Papaver somniferum HOM05D004872 ORTHO05D006050 1.6e-23 113.6 143 46.2
BraA05t20203Z Brassica rapa HOM05D004872 ORTHO05D006050 2.1e-23 113.2 157 45.9
Nitab4.5_0001582g0110 Nicotiana tabacum HOM05D004872 ORTHO05D006050 3.7e-23 112.5 120 52.5
HPP92_015870 Vanilla planifolia HOM05D004872 ORTHO05D006050 6.2e-23 111.7 131 46.6
ECA236G0590 Erigeron canadensis HOM05D004872 ORTHO05D006050 8.1e-23 111.3 108 53.7
Aqoxy1G01418 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.1e-22 110.9 176 42.0
Aqoxy72s001 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.1e-22 110.9 171 42.1
CARHR140030 Cardamine hirsuta HOM05D004872 ORTHO05D006050 1.1e-22 110.9 154 42.9
Aqoxy7G03169 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 1.8e-22 110.2 170 41.8
Os01g0224500 Oryza sativa ssp. japonica HOM05D004872 ORTHO05D006050 1.8e-22 110.2 164 42.1
Oeu026038.1 Olea europaea HOM05D004872 ORTHO05D006050 2.4e-22 109.8 123 52.8
Oeu040527.1 Olea europaea HOM05D004872 ORTHO05D006050 2.4e-22 109.8 123 52.8
Aqoxy2G00467 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 3.4e-21 105.9 169 40.8
TPR.G14060 Trifolium pratense HOM05D004872 ORTHO05D006050 2.2e-20 103.2 121 56.2
AL7G43510 Arabidopsis lyrata HOM05D004872 ORTHO05D006050 2.9e-20 102.8 168 38.7
Aa31LG9G10050 Aethionema arabicum HOM05D004872 ORTHO05D006050 6.4e-20 101.7 172 40.1
Zm00001eb192850 Zea mays HOM05D004872 ORTHO05D006050 1.4e-19 100.5 161 43.5
Ca_21429_v3 Cicer arietinum L. HOM05D004872 ORTHO05D006050 3.2e-19 99.4 95 60.0
BcaC02g11364 Brassica carinata HOM05D004872 ORTHO05D006050 9.3e-19 97.8 163 42.3
ATR0665G028 Amborella trichopoda HOM05D004872 ORTHO05D006050 1.1e-16 90.9 143 42.0
PGR102G1802 Punica granatum HOM05D004872 ORTHO05D006050 7.4e-16 88.2 174 37.9
Sc11g0003120 Simmondsia chinensis HOM05D004872 ORTHO05D006050 3.7e-15 85.9 99 50.5
Zm00001eb281550 Zea mays HOM05D004872 ORTHO05D006050 1.4e-14 84.0 123 44.7
AagrBONN_evm.TU.Sc2ySwM_362.236 Anthoceros agrestis HOM05D004872 ORTHO05D006050 1.3e-12 77.4 157 34.4
Pp3c23_7100 Physcomitrium patens HOM05D004872 ORTHO05D006050 2.5e-11 73.2 152 34.2
Atru.chr1.3406 Acer truncatum HOM05D004872 ORTHO05D006050 6.1e-10 68.6 94 44.7
Mapoly0036s0026 Marchantia polymorpha HOM05D004872 ORTHO05D006050 1.3e-09 67.4 175 31.4
Zm00001eb416880 Zea mays HOM05D004872 ORTHO05D006050 2.3e-09 66.6 102 44.1
SEGI_13451 Sequoiadendron giganteum HOM05D004872 ORTHO05D006050 8.7e-09 64.7 144 30.6
HanXRQChr17g0569331 Helianthus annuus HOM05D004872 ORTHO05D006050 5.7e-08 62.0 82 41.5
C04p16540 Brassica napus HOM05D004872 ORTHO05D006050 2.8e-07 59.7 206 30.6
Aqoxy7G03168 Aquilegia oxysepala HOM05D004872 ORTHO05D006050 4.1e-06 55.8 128 32.8


User provided reference genes

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