Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 8.4e-246 853.2 420 100.0
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 7.9e-236 820.1 420 95.5
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 4.3e-226 787.7 421 91.0
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 7.4e-226 786.9 421 91.4
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 8.0e-204 713.8 420 81.4
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 2.3e-203 712.2 420 81.0
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 4.0e-203 711.4 425 81.4
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 5.7e-202 707.6 420 80.7
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 5.9e-199 697.6 420 80.5
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 1.2e-196 689.9 420 79.8
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 1.2e-191 673.3 419 77.1
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 2.0e-191 672.5 420 77.1
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 3.2e-189 665.2 421 77.0
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 3.4e-186 655.2 420 74.5
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 1.3e-185 653.3 420 74.8
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 3.7e-185 651.7 420 74.8
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 9.2e-184 647.1 420 74.5
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 1.6e-183 646.4 420 73.8
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 5.9e-183 644.4 420 74.3
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 7.8e-183 644.0 420 73.8
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 6.6e-182 641.0 420 73.1
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 1.1e-181 640.2 420 74.3
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 1.9e-181 639.4 420 73.1
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 2.5e-181 639.0 420 73.8
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 4.3e-181 638.3 420 72.4
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 9.5e-181 637.1 420 71.0
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 2.1e-180 636.0 420 71.4
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 3.6e-180 635.2 420 74.0
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 3.6e-180 635.2 420 73.1
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 3.6e-180 635.2 420 72.4
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 6.1e-180 634.4 420 72.9
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 6.1e-180 634.4 420 73.1
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 1.4e-179 633.3 420 73.1
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 3.0e-179 632.1 420 72.9
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 4.0e-179 631.7 420 73.3
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 5.2e-179 631.3 420 72.9
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 6.8e-179 630.9 419 73.3
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 8.9e-179 630.6 420 71.7
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 1.2e-178 630.2 403 75.7
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 2.0e-178 629.4 420 71.9
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 5.7e-178 627.9 420 72.6
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 5.7e-178 627.9 420 72.6
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.4e-176 623.2 420 71.9
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 5.4e-176 621.3 420 70.7
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 5.9e-175 617.8 420 71.9
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 1.0e-174 617.1 421 70.5
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.7e-174 616.3 420 71.7
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 5.0e-174 614.8 420 71.2
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 5.0e-174 614.8 420 71.2
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 6.6e-174 614.4 420 71.7
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 6.6e-174 614.4 420 71.7
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 2.5e-173 612.5 420 70.2
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 1.2e-172 610.1 420 69.5
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.6e-172 609.8 420 70.0
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 1.6e-172 609.8 420 70.7
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 2.8e-172 609.0 420 69.8
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 1.0e-171 607.1 420 68.8
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 4.0e-171 605.1 421 71.0
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 6.8e-171 604.4 420 69.0
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.6e-170 602.4 420 69.5
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 3.4e-170 602.1 420 68.6
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 4.4e-170 601.7 420 69.5
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 5.8e-170 601.3 420 68.1
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 2.9e-169 599.0 420 68.6
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 3.2e-168 595.5 420 68.3
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 2.0e-167 592.8 420 67.1
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 7.8e-167 590.9 420 66.9
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 7.8e-167 590.9 415 68.2
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 1.3e-166 590.1 420 68.1
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 6.6e-166 587.8 420 68.6
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 8.6e-166 587.4 421 68.4
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 8.6e-166 587.4 420 68.6
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 1.5e-165 586.6 416 67.8
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 9.5e-165 583.9 420 68.1
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 2.3e-163 579.3 420 66.0
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 6.8e-163 577.8 420 68.3
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 9.9e-162 573.9 420 65.7
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 9.9e-162 573.9 420 66.0
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 2.2e-161 572.8 420 66.0
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 8.3e-161 570.9 420 66.2
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 1.1e-160 570.5 421 66.3
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 2.4e-160 569.3 420 65.5
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 2.4e-160 569.3 425 66.1
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 5.4e-160 568.2 421 65.3
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 1.6e-159 566.6 408 66.7
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.7e-159 565.8 425 64.7
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 4.6e-159 565.1 420 65.7
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 1.3e-158 563.5 423 64.5
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.3e-158 562.8 425 64.2
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 2.3e-158 562.8 420 65.5
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 2.3e-158 562.8 424 66.0
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 3.9e-158 562.0 420 64.0
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 3.9e-158 562.0 423 66.0
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 5.6e-157 558.1 420 63.8
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 4.7e-156 555.1 422 65.9
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 8.1e-156 554.3 420 63.8
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 4.0e-155 552.0 420 63.3
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 5.2e-155 551.6 420 63.1
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 6.8e-155 551.2 420 63.3
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 1.2e-154 550.4 420 62.9
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 4.4e-154 548.5 420 63.6
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 7.6e-154 547.7 420 63.8
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 9.2e-152 540.8 422 62.1
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 5.6e-149 531.6 422 65.4
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 2.8e-148 529.3 423 63.6
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 8.1e-148 527.7 422 64.9
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 2.9e-145 519.2 422 63.0
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 8.4e-145 517.7 420 59.5
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 4.3e-141 505.4 420 57.1
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.6e-140 503.4 377 64.7
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 2.1e-140 503.1 420 56.7
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 4.2e-136 488.8 425 58.1
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 5.1e-134 481.9 421 56.1
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 9.9e-130 467.6 358 68.2
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 6.9e-123 444.9 425 52.7
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 2.1e-119 433.3 405 52.1
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 8.7e-118 427.9 425 50.8
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 8.5e-113 411.4 250 80.0
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 6.7e-110 401.7 282 68.8
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 2.2e-105 386.7 325 59.1
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 2.5e-104 383.3 423 47.8
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 9.4e-104 381.3 411 45.5
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 5.9e-90 335.5 374 45.2
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 6.7e-86 322.0 302 57.0
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 5.7e-85 318.9 412 42.0
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 5.5e-80 302.4 298 52.3
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 6.1e-79 298.9 248 58.1
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 1.5e-72 277.7 317 44.2
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 6.1e-71 272.3 266 56.4
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 1.4e-59 234.6 134 81.3
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 1.9e-43 181.0 155 60.0
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 7.1e-43 179.1 99 81.8
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 7.3e-40 169.1 131 61.1
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 1.8e-38 164.5 91 81.3
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 5.3e-30 136.3 74 81.1
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 1.2e-29 135.2 71 83.1
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 3.8e-28 130.2 71 81.7
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 5.4e-27 126.3 71 80.3
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 5.4e-27 126.3 71 80.3
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 2.2e-20 104.4 79 62.0
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 1.0e-17 95.5 102 52.0
SMO111G0157 Selaginella moellendorffii HOM05D019739 ORTHO05D026044 1.3e-15 88.6 407 26.3
Hund25128 Selenicereus undatus HOM05D000312 ORTHO05D000221 2.7e-10 70.9 309 25.6
MBI05_g43550_MAGBIO Magnolia biondii HOM05D003488 ORTHO05D004214 3.3e-08 63.9 285 26.0
HanXRQChr05g0139821 Helianthus annuus HOM05D001396 ORTHO05D000493 4.3e-08 63.5 238 25.2
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 9.6e-08 62.4 230 27.8
HanXRQChr03g0060681 Helianthus annuus HOM05D006588 ORTHO05D008272 1.6e-07 61.6 238 26.5
HanXRQChr03g0060651 Helianthus annuus HOM05D006588 ORTHO05D008272 2.1e-07 61.2 238 26.5
HanXRQChr03g0060671 Helianthus annuus HOM05D006588 ORTHO05D008272 2.1e-07 61.2 238 26.5
HanXRQChr03g0060961 Helianthus annuus HOM05D006588 ORTHO05D008272 3.7e-07 60.5 243 24.7
PSO063G5693 Papaver somniferum HOM05D005029 ORTHO05D006052 8.2e-07 59.3 246 27.2
Nitab4.5_0000027g0360 Nicotiana tabacum HOM05D000312 ORTHO05D000221 1.8e-06 58.2 133 30.1
PSO170G5088 Papaver somniferum HOM05D000051 ORTHO05D000015 3.1e-06 57.4 246 26.4
Lsat_1_v5_gn_5_69040 Lactuca sativa HOM05D000051 ORTHO05D000015 5.3e-06 56.6 212 27.4
CBR_g31165 Chara braunii HOM05D019043 ORTHO05D020397 6.9e-06 56.2 297 24.6
HanXRQChr03g0061101 Helianthus annuus HOM05D006588 ORTHO05D008272 6.9e-06 56.2 237 26.6


User provided reference genes

Program Settings