Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.3e-62 243.0 134 100.0
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 1.4e-53 213.0 134 85.1
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 3.9e-35 151.8 149 63.8
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 1.5e-34 149.8 149 61.1
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 1.5e-34 149.8 149 62.4
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 7.3e-34 147.5 149 60.4
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 7.3e-34 147.5 149 61.1
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 9.5e-34 147.1 149 61.1
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 2.8e-33 145.6 149 61.1
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 3.6e-33 145.2 149 61.1
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 4.7e-33 144.8 149 60.4
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 8.0e-33 144.1 149 60.4
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 1.0e-32 143.7 149 59.1
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 2.3e-32 142.5 149 59.1
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 5.2e-32 141.4 149 59.7
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 8.9e-32 140.6 134 62.7
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.2e-31 140.2 134 62.7
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 2.0e-31 139.4 149 57.7
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 2.6e-31 139.0 149 57.0
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 2.6e-31 139.0 134 62.7
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 3.4e-31 138.7 134 61.9
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 5.8e-31 137.9 149 58.4
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 1.3e-30 136.7 149 55.7
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 2.2e-30 136.0 149 55.0
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.9e-30 135.6 149 56.4
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 4.9e-30 134.8 149 57.0
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 8.3e-30 134.0 148 58.8
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.1e-29 133.7 149 55.7
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.1e-29 133.7 149 55.7
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 1.4e-29 133.3 149 57.7
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.9e-29 132.9 121 62.8
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.9e-29 132.9 118 64.4
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 1.9e-29 132.9 148 56.8
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 4.1e-29 131.7 149 56.4
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 5.4e-29 131.3 134 59.7
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 5.4e-29 131.3 134 59.0
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 7.0e-29 131.0 119 63.0
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 3.5e-28 128.6 149 54.4
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 6.0e-28 127.9 151 56.3
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 1.3e-27 126.7 151 54.3
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 2.3e-27 125.9 153 54.9
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 2.3e-27 125.9 149 55.0
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 3.0e-27 125.6 134 59.7
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 3.0e-27 125.6 149 55.0
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 5.0e-27 124.8 149 52.3
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 6.6e-27 124.4 153 49.0
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 8.6e-27 124.0 149 52.3
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.1e-26 123.6 144 55.6
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.1e-26 123.6 144 55.6
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 1.5e-26 123.2 149 53.0
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.9e-26 122.9 144 54.9
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 3.3e-26 122.1 134 56.7
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 1.2e-25 120.2 134 54.5
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 2.8e-25 119.0 152 52.0
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 2.8e-25 119.0 152 52.0
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 2.8e-25 119.0 149 55.7
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 3.6e-25 118.6 142 56.3
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 4.7e-25 118.2 149 50.3
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 6.2e-25 117.9 132 55.3
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 6.2e-25 117.9 152 52.0
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 1.4e-24 116.7 149 50.3
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 3.1e-24 115.5 122 57.4
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 6.8e-24 114.4 135 54.1
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 8.9e-24 114.0 130 55.4
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 8.9e-24 114.0 134 48.5
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.5e-23 113.2 151 47.0
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 2.0e-23 112.8 151 49.7
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 3.4e-23 112.1 134 50.7
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 3.4e-23 112.1 151 47.0
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 7.5e-23 110.9 153 51.0
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 9.8e-23 110.5 149 53.7
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.7e-22 109.8 121 57.9
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-22 109.8 120 58.3
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 2.2e-22 109.4 151 47.7
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 2.9e-22 109.0 105 62.9
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 3.7e-22 108.6 151 48.3
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 4.9e-22 108.2 120 58.3
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 4.9e-22 108.2 120 58.3
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 4.9e-22 108.2 156 49.4
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 6.4e-22 107.8 134 47.8
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.9e-21 106.3 105 61.9
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 1.9e-21 106.3 149 49.0
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 5.4e-21 104.8 105 61.9
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 9.2e-21 104.0 149 48.3
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 3.5e-20 102.1 132 52.3
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 7.8e-20 100.9 105 52.4
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 1.3e-19 100.1 148 47.3
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 3.0e-19 99.0 121 47.9
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 1.1e-18 97.1 149 40.9
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 1.5e-18 96.7 150 46.7
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 1.9e-18 96.3 105 53.3
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 2.5e-18 95.9 151 47.0
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 2.5e-18 95.9 149 47.0
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 3.3e-18 95.5 148 45.3
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 5.6e-18 94.7 151 47.0
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 2.8e-17 92.4 148 45.9
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 3.6e-17 92.0 148 45.9
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 6.2e-17 91.3 149 45.6
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 8.1e-17 90.9 149 45.6
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 8.1e-17 90.9 149 45.6
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 8.1e-17 90.9 149 45.6
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 8.1e-17 90.9 149 45.6
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 8.1e-17 90.9 149 45.6
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 1.1e-16 90.5 148 45.3
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.1e-16 90.5 79 63.3
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 1.1e-16 90.5 151 45.7
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 1.1e-16 90.5 151 45.7
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 1.4e-16 90.1 149 45.0
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 3.1e-16 89.0 124 46.8
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 4.0e-16 88.6 148 45.3
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 6.8e-16 87.8 149 46.3
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 8.9e-16 87.4 103 52.4
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 3.4e-15 85.5 103 52.4
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 3.4e-15 85.5 145 37.9
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 3.4e-15 85.5 134 39.6
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 5.8e-15 84.7 152 42.8
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 1.7e-14 83.2 149 42.3
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 4.6e-12 75.1 149 40.3
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.7e-11 73.2 150 41.3
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 1.6e-09 66.6 59 61.0
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.1e-08 63.9 92 45.7
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 3.1e-08 62.4 60 61.7
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 5.2e-08 61.6 86 44.2
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.7e-06 56.6 63 52.4


User provided reference genes

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