Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G249700 Phaseolus vulgaris HOM05D004546 ORTHO05D005419 5.4e-246 854.0 461 100.0
VMungo0251G0798 Vigna mungo HOM05D004546 ORTHO05D005419 3.5e-205 718.4 478 83.1
Glyma.05G169000 Glycine max HOM05D004546 ORTHO05D005419 7.5e-179 630.9 462 75.5
Lj4g0018170 Lotus japonicus HOM05D004546 ORTHO05D005419 4.9e-162 575.1 458 70.1
Lalb_Chr12g0204461 Lupinus albus HOM05D004546 ORTHO05D005419 9.2e-161 570.9 440 70.5
VMungo0251G0767 Vigna mungo HOM05D004546 ORTHO05D005419 4.7e-141 505.4 483 63.8
Medtr8g088840 Medicago truncatula HOM05D004546 ORTHO05D005419 2.1e-136 490.0 456 61.4
TPR.G23101 Trifolium pratense HOM05D004546 ORTHO05D005419 1.7e-135 486.9 456 60.1
Cfa005513 Carpinus fangiana HOM05D004546 ORTHO05D005419 1.5e-131 473.8 442 59.0
Ca_17808_v3 Cicer arietinum L. HOM05D004546 ORTHO05D005419 1.9e-129 466.8 444 61.0
arahy.Tifrunner.gnm1.ann1.SB4BQ5 Arachis hypogaea HOM05D004546 ORTHO05D005419 1.1e-126 457.6 459 56.9
arahy.Tifrunner.gnm1.ann1.QA5S84 Arachis hypogaea HOM05D004546 ORTHO05D005419 8.9e-124 448.0 459 56.6
CsaV3_5G025650 Cucumis sativus L. HOM05D004546 ORTHO05D005419 2.0e-123 446.8 437 55.1
Psat7g062000 Pisum sativum HOM05D004546 ORTHO05D005419 1.9e-121 440.3 444 57.0
PGSC0003DMG400010002 Solanum tuberosum HOM05D004546 ORTHO05D005419 3.2e-121 439.5 436 54.1
Sed0013794 Sechium edule HOM05D004546 ORTHO05D005419 7.8e-120 434.9 437 54.0
CSS0049092 Camellia sinensis var. sinensis HOM05D004546 ORTHO05D005419 1.0e-119 434.5 417 57.1
Hma1.2p1_1482F.1_g286200 Hydrangea macrophylla HOM05D004546 ORTHO05D005419 1.7e-119 433.7 436 54.8
GSVIVG01035964001 Vitis vinifera HOM05D004546 ORTHO05D005419 2.3e-119 433.3 447 54.8
CiPaw.05G045000 Carya illinoinensis HOM05D004546 ORTHO05D005419 1.1e-118 431.0 375 61.9
Duzib177G0829 Durio zibethinus HOM05D004546 ORTHO05D005419 1.3e-117 427.6 439 52.8
vmacro01757 Vaccinium macrocarpon HOM05D004546 ORTHO05D005419 2.1e-117 426.8 436 54.6
Thecc.05G227600 Theobroma cacao HOM05D004546 ORTHO05D005419 4.8e-117 425.6 432 53.2
ClCG03G000010 Citrullus lanatus HOM05D004546 ORTHO05D005419 6.2e-117 425.2 473 51.4
Rhsim09G0016100 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.2e-114 416.8 433 54.3
Rhsim11G0128800 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.6e-112 410.6 445 52.4
Sabra17G0029200 Salix brachista HOM05D004546 ORTHO05D005419 1.6e-112 410.6 437 52.9
Haze_01703 Corylus avellana HOM05D004546 ORTHO05D005419 3.5e-112 409.5 546 46.2
QL02p098920 Quercus lobata HOM05D004546 ORTHO05D005419 2.3e-111 406.8 433 53.1
Medtr4g049650 Medicago truncatula HOM05D004546 ORTHO05D005419 1.5e-110 404.1 444 53.6
Potri.017G043000 Populus trichocarpa HOM05D004546 ORTHO05D005419 3.3e-110 402.9 436 52.1
Gorai.001G269700 Gossypium raimondii HOM05D004546 ORTHO05D005419 9.6e-110 401.4 432 51.6
Potri.007G116200 Populus trichocarpa HOM05D004546 ORTHO05D005419 3.6e-109 399.4 437 51.7
Prupe.1G570900 Prunus persica HOM05D004546 ORTHO05D005419 3.1e-108 396.4 432 50.0
ECA234G1828 Erigeron canadensis HOM05D004546 ORTHO05D005419 4.0e-108 396.0 436 49.3
MSTRG.16518 Avicennia marina HOM05D004546 ORTHO05D005419 2.9e-106 389.8 443 48.8
Ciclev10015244m.g Citrus clementina HOM05D004546 ORTHO05D005419 3.8e-106 389.4 372 57.0
DCAR_006706 Daucus carota HOM05D004546 ORTHO05D005419 4.9e-106 389.0 434 50.0
Sopen10g008970 Solanum pennellii HOM05D004546 ORTHO05D005419 8.4e-106 388.3 453 47.7
FAN02G2941 Fragaria x ananassa HOM05D004546 ORTHO05D005419 7.1e-105 385.2 437 48.5
Migut.B00830 Erythranthe guttata HOM05D004546 ORTHO05D005419 4.6e-104 382.5 428 48.8
SHI16664 Sapria himalayana HOM05D004546 ORTHO05D005419 1.8e-103 380.6 427 49.6
Atru.chr8.1488 Acer truncatum HOM05D004546 ORTHO05D005419 3.9e-103 379.4 432 49.1
Nitab4.5_0003652g0050 Nicotiana tabacum HOM05D004546 ORTHO05D005419 2.5e-102 376.7 422 49.5
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 9.6e-102 374.8 423 48.5
Nitab4.5_0000753g0130 Nicotiana tabacum HOM05D004546 ORTHO05D005419 2.8e-101 373.2 422 49.1
Eucgr.G00575 Eucalyptus grandis HOM05D004546 ORTHO05D005419 6.2e-101 372.1 437 49.2
Sc11g0004500 Simmondsia chinensis HOM05D004546 ORTHO05D005419 8.1e-101 371.7 438 46.6
THA.LOC104809617 Tarenaya hassleriana HOM05D004546 ORTHO05D005419 8.1e-101 371.7 438 46.6
Peaxi162Scf00152g01427 Petunia axillaris HOM05D004546 ORTHO05D005419 1.8e-100 370.5 437 49.0
CARHR052070 Cardamine hirsuta HOM05D004546 ORTHO05D005419 5.3e-100 369.0 428 47.7
Solyc10g019040.2 Solanum lycopersicum HOM05D004546 ORTHO05D005419 2.6e-99 366.7 453 45.7
Aqoxy6G00209 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 3.8e-98 362.8 447 47.0
Sp2g03510 Schrenkiella parvula HOM05D004546 ORTHO05D005419 2.5e-97 360.1 428 48.1
TAR628G0514 Trochodendron aralioides HOM05D004546 ORTHO05D005419 2.5e-97 360.1 393 52.2
Dinv24291 Davidia involucrata HOM05D004546 ORTHO05D005419 3.2e-97 359.8 447 47.4
Actinidia00204 Actinidia chinensis HOM05D004546 ORTHO05D005419 5.5e-97 359.0 436 50.0
EL10Ac2g02703 Beta vulgaris HOM05D004546 ORTHO05D005419 5.5e-97 359.0 438 47.3
RcHm_v2.0_Chr7g0222021 Rosa chinensis HOM05D004546 ORTHO05D005419 1.2e-96 357.8 437 46.0
Carub.0002s0420 Capsella rubella HOM05D004546 ORTHO05D005419 1.6e-96 357.5 428 46.5
Gohir.D06G191600 Gossypium hirsutum HOM05D004546 ORTHO05D005419 6.0e-96 355.5 432 47.9
CANSAT54G1257 Cannabis sativa HOM05D004546 ORTHO05D005419 1.0e-95 354.8 366 52.7
BolC4t24246H Brassica oleracea HOM05D004546 ORTHO05D005419 1.3e-95 354.4 447 46.5
C03p25600 Brassica napus HOM05D004546 ORTHO05D005419 1.8e-95 354.0 442 47.1
AT1G61000 Arabidopsis thaliana HOM05D004546 ORTHO05D005419 3.9e-95 352.8 428 46.5
PSO210G6794 Papaver somniferum HOM05D004546 ORTHO05D005419 6.7e-95 352.1 441 46.0
FvH4_6g25020 Fragaria vesca HOM05D004546 ORTHO05D005419 3.3e-94 349.7 437 45.1
Lj5A252T47 Lonicera japonica HOM05D004546 ORTHO05D005419 7.4e-94 348.6 437 46.9
MD15G1425300 Malus domestica HOM05D004546 ORTHO05D005419 1.3e-93 347.8 440 44.5
Cc02_g22580 Coffea canephora HOM05D004546 ORTHO05D005419 1.6e-93 347.4 434 44.2
MD08G1233000 Malus domestica HOM05D004546 ORTHO05D005419 2.8e-93 346.7 440 44.8
Medtr8g088800 Medicago truncatula HOM05D004546 ORTHO05D005419 3.7e-93 346.3 429 51.0
PSO210G7371 Papaver somniferum HOM05D004546 ORTHO05D005419 3.7e-93 346.3 441 45.4
BolC3t14948H Brassica oleracea HOM05D004546 ORTHO05D005419 4.8e-93 345.9 451 45.7
A03p21620 Brassica napus HOM05D004546 ORTHO05D005419 3.1e-92 343.2 451 45.0
BraA03t11397Z Brassica rapa HOM05D004546 ORTHO05D005419 3.1e-92 343.2 451 45.0
Manes.10G066500 Manihot esculenta HOM05D004546 ORTHO05D005419 2.6e-91 340.1 437 46.2
Rhsim09G0048700 Rhododendron simsii HOM05D004546 ORTHO05D005419 1.7e-90 337.4 321 57.6
HanXRQChr10g0290511 Helianthus annuus HOM05D004546 ORTHO05D005419 2.9e-90 336.7 438 45.7
TPR.G28353 Trifolium pratense HOM05D004546 ORTHO05D005419 1.4e-89 334.3 286 63.3
Sabra07G0094500 Salix brachista HOM05D004546 ORTHO05D005419 3.2e-89 333.2 590 38.8
FAN05G4088 Fragaria x ananassa HOM05D004546 ORTHO05D005419 5.5e-89 332.4 459 42.7
FAN14G0315 Fragaria x ananassa HOM05D004546 ORTHO05D005419 5.5e-89 332.4 464 42.2
Thhalv10023463m.g Eutrema salsugineum HOM05D004546 ORTHO05D005419 9.3e-89 331.6 428 44.6
C04p25630 Brassica napus HOM05D004546 ORTHO05D005419 1.6e-88 330.9 496 41.9
FvH4_7g06682 Fragaria vesca HOM05D004546 ORTHO05D005419 1.6e-88 330.9 437 43.7
CAN.G1330.18 Capsicum annuum HOM05D004546 ORTHO05D005419 2.7e-88 330.1 436 44.0
COL.COLO4_05853 Corchorus olitorius HOM05D004546 ORTHO05D005294 3.6e-88 329.7 451 45.9
Lsat_1_v5_gn_5_105520 Lactuca sativa HOM05D004546 ORTHO05D005419 3.6e-88 329.7 436 43.1
FAN06G4932 Fragaria x ananassa HOM05D004546 ORTHO05D005419 1.8e-87 327.4 437 43.5
GSVIVG01022895001 Vitis vinifera HOM05D004546 ORTHO05D005419 3.0e-87 326.6 450 44.9
Ah.14g086060 Amaranthus hybridus HOM05D004546 ORTHO05D005419 1.9e-86 323.9 438 45.0
Gohir.A06G184800 Gossypium hirsutum HOM05D004546 ORTHO05D005419 2.5e-86 323.6 414 46.6
SGA_v2.0_scaffold110G31325 Striga asiatica HOM05D004546 ORTHO05D005419 2.5e-86 323.6 441 42.9
Gorai.010G224800 Gossypium raimondii HOM05D004546 ORTHO05D005419 4.8e-85 319.3 432 44.2
RcHm_v2.0_Chr1g0336301 Rosa chinensis HOM05D004546 ORTHO05D005419 1.0e-82 311.6 352 48.6
Cpa.g.sc8.264 Carica papaya HOM05D004546 ORTHO05D005419 6.5e-82 308.9 302 53.6
BcaC02g10598 Brassica carinata HOM05D004546 ORTHO05D005419 3.6e-80 303.1 463 41.3
Peaxi162Scf00152g01529 Petunia axillaris HOM05D004546 ORTHO05D005419 6.7e-79 298.9 448 43.1
Gohir.D07G234200 Gossypium hirsutum HOM05D004546 ORTHO05D005419 1.3e-77 294.7 432 42.1
PGR042G1236 Punica granatum HOM05D004546 ORTHO05D005419 4.8e-77 292.7 441 41.0
AUR62014224 Chenopodium quinoa HOM05D004546 ORTHO05D005419 8.2e-77 292.0 422 41.9
TWI59G0103 Tripterygium wilfordii HOM05D004546 ORTHO05D005419 2.4e-76 290.4 432 40.3
Gohir.A07G227000 Gossypium hirsutum HOM05D004546 ORTHO05D005419 5.0e-74 282.7 414 42.0
AUR62041118 Chenopodium quinoa HOM05D004546 ORTHO05D005419 3.6e-72 276.6 422 40.8
TPR.G38758 Trifolium pratense HOM05D004546 ORTHO05D005419 1.0e-71 275.0 454 39.9
Atru.chr13.2649 Acer truncatum HOM05D004546 ORTHO05D005419 4.4e-70 269.6 346 46.5
COL.COLO4_10577 Corchorus olitorius HOM05D004546 ORTHO05D005419 1.3e-69 268.1 444 40.5
Carub.0002s0419 Capsella rubella HOM05D004546 ORTHO05D005419 2.4e-68 263.8 448 37.9
Oeu033122.2 Olea europaea HOM05D004546 ORTHO05D005419 4.5e-67 259.6 247 51.4
HPP92_000323 Vanilla planifolia HOM05D004546 ORTHO05D005419 1.3e-66 258.1 449 35.2
CDE08G0494 Ceratophyllum demersum HOM05D004546 ORTHO05D005419 3.8e-66 256.5 387 41.3
Hund15499 Selenicereus undatus HOM05D004546 ORTHO05D005419 6.5e-66 255.8 325 44.9
Os03g0577100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 2.5e-65 253.8 455 37.1
Nn1g08777 Nelumbo nucifera HOM05D004546 ORTHO05D005419 3.6e-64 250.0 344 44.8
FAN03G2280 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.2e-61 240.7 610 30.5
Os08g0163100 Oryza sativa ssp. japonica HOM05D004546 ORTHO05D005419 1.6e-59 234.6 455 35.2
MELO3C002916.2 Cucumis melo HOM05D004546 ORTHO05D005419 1.7e-58 231.1 221 59.7
AL2G15450 Arabidopsis lyrata HOM05D004546 ORTHO05D005419 2.1e-56 224.2 298 46.0
unitig_8.g2954 Utricularia gibba HOM05D004546 ORTHO05D005419 3.6e-56 223.4 469 32.2
TPR.G31804 Trifolium pratense HOM05D004546 ORTHO05D005419 4.1e-52 209.9 217 60.4
Lsat_1_v5_gn_8_80961 Lactuca sativa HOM05D004546 ORTHO05D005419 2.9e-50 203.8 254 45.3
Eucgr.L03482 Eucalyptus grandis HOM05D004546 ORTHO05D005419 1.5e-49 201.4 220 50.5
Rhsim09G0048900 Rhododendron simsii HOM05D004546 ORTHO05D005419 2.9e-42 177.2 410 33.7
ATR0177G064 Amborella trichopoda HOM05D004546 ORTHO05D005419 8.6e-42 175.6 339 34.2
TPR.G37878 Trifolium pratense HOM05D004546 ORTHO05D005419 7.3e-41 172.6 158 56.3
COL.COLO4_13071 Corchorus olitorius HOM05D004546 ORTHO05D005419 6.1e-40 169.5 205 42.9
SEGI_32079 Sequoiadendron giganteum HOM05D004546 ORTHO05D005419 7.5e-38 162.5 437 29.7
Oeu027800.1 Olea europaea HOM05D004546 ORTHO05D005419 5.4e-36 156.4 168 53.0
C05p50930 Brassica napus HOM05D004546 ORTHO05D005419 5.0e-34 149.8 205 40.0
FAN10G1533 Fragaria x ananassa HOM05D004546 ORTHO05D005419 2.3e-31 141.0 423 28.6
Atru.chr4.610 Acer truncatum HOM05D004546 ORTHO05D005419 7.0e-28 129.4 125 49.6
TPR.G37996 Trifolium pratense HOM05D004546 ORTHO05D005419 1.0e-26 125.6 187 43.3
Aqoxy7G01614 Aquilegia oxysepala HOM05D004546 ORTHO05D005419 3.9e-26 123.6 374 29.9
Zm00001eb064460 Zea mays HOM05D004546 ORTHO05D005419 1.1e-25 122.1 410 26.3
AagrBONN_evm.TU.Sc2ySwM_117.2656 Anthoceros agrestis HOM05D004546 ORTHO05D005419 1.9e-25 121.3 250 30.8
MD08G1232500 Malus domestica HOM05D004546 ORTHO05D005419 1.2e-22 112.1 98 51.0
CAN.G1882.2 Capsicum annuum HOM05D004546 ORTHO05D005419 2.0e-22 111.3 115 60.9
PSO210G1504 Papaver somniferum HOM05D004546 ORTHO05D005419 7.5e-22 109.4 153 46.4
C05p50920 Brassica napus HOM05D004546 ORTHO05D005419 1.1e-20 105.5 156 44.9
TPR.G18400 Trifolium pratense HOM05D004546 ORTHO05D005419 1.6e-19 101.7 66 83.3
Hund15500 Selenicereus undatus HOM05D004546 ORTHO05D005419 4.6e-19 100.1 137 46.0
arahy.Tifrunner.gnm1.ann1.MTQ0B2 Arachis hypogaea HOM05D004546 ORTHO05D005419 3.3e-17 94.0 114 52.6
Rhsim09G0049000 Rhododendron simsii HOM05D004546 ORTHO05D005419 3.3e-17 94.0 110 47.3
TPR.G7268 Trifolium pratense HOM05D004546 ORTHO05D005419 5.6e-17 93.2 74 64.9
RhsimUnG0234900 Rhododendron simsii HOM05D004546 ORTHO05D005419 4.7e-16 90.1 76 55.3
CAN.G1882.3 Capsicum annuum HOM05D004546 ORTHO05D005419 6.2e-16 89.7 82 57.3
Rhsim09G0048500 Rhododendron simsii HOM05D004546 ORTHO05D005419 5.8e-14 83.2 441 26.1
Atru.chr4.605 Acer truncatum HOM05D005324 ORTHO05D001185 8.7e-10 69.3 92 44.6
Actinidia39037 Actinidia chinensis HOM05D004546 ORTHO05D005419 3.1e-07 60.8 86 44.2
Mapoly0004s0096 Marchantia polymorpha HOM05D004546 ORTHO05D005419 9.0e-07 59.3 406 22.7
Pp3c12_6220 Physcomitrium patens HOM05D004546 ORTHO05D005419 1.2e-06 58.9 420 21.0
TPR.G40486 Trifolium pratense HOM05D004546 ORTHO05D005419 3.4e-06 57.4 102 43.1


User provided reference genes

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