Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G248400 Phaseolus vulgaris HOM05D005162 ORTHO05D007064 1.2e-189 666.4 334 100.0
VMungo0251G3523 Vigna mungo HOM05D005162 ORTHO05D007064 7.1e-179 630.6 334 94.6
Glyma.05G168000 Glycine max HOM05D005162 ORTHO05D007064 3.6e-167 591.7 326 90.5
Glyma.08G126400 Glycine max HOM05D005162 ORTHO05D007064 1.3e-164 583.2 332 88.3
Lalb_Chr07g0185841 Lupinus albus HOM05D005162 ORTHO05D007064 7.1e-163 577.4 326 87.7
Lj4g0017883 Lotus japonicus HOM05D005162 ORTHO05D007064 2.1e-162 575.9 334 83.8
TPR.G6800 Trifolium pratense HOM05D005162 ORTHO05D007064 1.3e-161 573.2 337 83.7
Ca_17836_v3 Cicer arietinum L. HOM05D005162 ORTHO05D007064 3.0e-161 572.0 333 85.3
Medtr8g088640 Medicago truncatula HOM05D005162 ORTHO05D007064 2.1e-159 565.8 322 85.7
arahy.Tifrunner.gnm1.ann1.3Y07W7 Arachis hypogaea HOM05D005162 ORTHO05D007064 3.6e-159 565.1 330 84.5
arahy.Tifrunner.gnm1.ann1.R3RHS8 Arachis hypogaea HOM05D005162 ORTHO05D007064 6.2e-159 564.3 330 84.2
Psat7g063440 Pisum sativum HOM05D005162 ORTHO05D007064 1.1e-158 563.5 337 82.5
Thecc.02G090800 Theobroma cacao HOM05D005162 ORTHO05D007064 3.1e-158 562.0 332 82.5
Gohir.A03G192500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 4.4e-157 558.1 333 81.7
COL.COLO4_11752 Corchorus olitorius HOM05D005162 ORTHO05D007064 5.8e-157 557.8 333 82.0
Gohir.D02G213500 Gossypium hirsutum HOM05D005162 ORTHO05D007064 1.7e-156 556.2 333 81.7
Gorai.005G241400 Gossypium raimondii HOM05D005162 ORTHO05D007064 6.4e-156 554.3 333 81.4
Duzib132G0282 Durio zibethinus HOM05D005162 ORTHO05D007064 1.4e-155 553.1 335 80.3
Ciclev10001794m.g Citrus clementina HOM05D005162 ORTHO05D007064 1.9e-155 552.7 319 83.1
Manes.07G021300 Manihot esculenta HOM05D005162 ORTHO05D007064 1.9e-155 552.7 331 81.6
Atru.chr6.699 Acer truncatum HOM05D005162 ORTHO05D007064 7.9e-154 547.4 328 81.1
MELO3C011838.2 Cucumis melo HOM05D005162 ORTHO05D007064 1.3e-153 546.6 328 81.1
ClCG11G013410 Citrullus lanatus HOM05D005162 ORTHO05D007064 1.7e-153 546.2 329 81.5
Eucgr.G00398 Eucalyptus grandis HOM05D005162 ORTHO05D007064 2.3e-153 545.8 318 83.0
CsaV3_5G029940 Cucumis sativus L. HOM05D005162 ORTHO05D007064 3.9e-153 545.0 328 80.8
Aqoxy6G00135 Aquilegia oxysepala HOM05D005162 ORTHO05D007064 5.6e-152 541.2 334 80.2
THA.LOC104803191 Tarenaya hassleriana HOM05D005162 ORTHO05D007064 5.6e-152 541.2 318 81.8
ECA234G0102 Erigeron canadensis HOM05D005162 ORTHO05D007064 3.6e-151 538.5 317 81.7
TAR376G0995 Trochodendron aralioides HOM05D005162 ORTHO05D007064 3.6e-151 538.5 324 80.9
PSO170G6393 Papaver somniferum HOM05D005162 ORTHO05D007064 4.8e-151 538.1 329 80.2
CANSAT54G0278 Cannabis sativa HOM05D005162 ORTHO05D007064 8.1e-151 537.3 328 80.2
CiPaw.05G051000 Carya illinoinensis HOM05D005162 ORTHO05D007064 1.4e-150 536.6 321 82.2
Potri.004G219300 Populus trichocarpa HOM05D005162 ORTHO05D007064 1.4e-150 536.6 330 78.8
Sed0011379 Sechium edule HOM05D005162 ORTHO05D007064 2.4e-150 535.8 316 81.3
PGR042G0281 Punica granatum HOM05D005162 ORTHO05D007064 4.0e-150 535.0 317 81.1
Peaxi162Scf00011g00742 Petunia axillaris HOM05D005162 ORTHO05D007064 5.3e-150 534.6 335 78.2
RcHm_v2.0_Chr7g0220871 Rosa chinensis HOM05D005162 ORTHO05D007064 9.0e-150 533.9 329 79.0
MSTRG.16505 Avicennia marina HOM05D005162 ORTHO05D007064 1.5e-149 533.1 334 77.8
Cpa.g.sc38.29 Carica papaya HOM05D005162 ORTHO05D007064 2.0e-149 532.7 318 79.6
FvH4_5g28710 Fragaria vesca HOM05D005162 ORTHO05D007064 2.0e-149 532.7 331 78.2
FAN04G0484 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.0e-149 532.7 334 78.1
Ah.03g137150 Amaranthus hybridus HOM05D005162 ORTHO05D007064 3.4e-149 531.9 318 79.6
FAN18G1533 Fragaria x ananassa HOM05D005162 ORTHO05D007064 1.7e-148 529.6 331 77.9
DCAR_006685 Daucus carota HOM05D005162 ORTHO05D007064 2.2e-148 529.3 328 78.4
HanXRQChr10g0294681 Helianthus annuus HOM05D005162 ORTHO05D007064 2.2e-148 529.3 333 79.0
Lsat_1_v5_gn_5_105901 Lactuca sativa HOM05D005162 ORTHO05D007064 2.2e-148 529.3 318 81.1
Sc07g0004980 Simmondsia chinensis HOM05D005162 ORTHO05D007064 2.2e-148 529.3 329 78.1
Prupe.1G576000 Prunus persica HOM05D005162 ORTHO05D007064 4.9e-148 528.1 321 79.4
CSS0000837 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 6.4e-148 527.7 332 78.0
Cc02_g22900 Coffea canephora HOM05D005162 ORTHO05D007064 6.4e-148 527.7 320 79.4
Sp7g16990 Schrenkiella parvula HOM05D005162 ORTHO05D007064 6.4e-148 527.7 318 79.6
MD15G1431000 Malus domestica HOM05D005162 ORTHO05D007064 8.4e-148 527.3 325 79.4
Sabra01G0166400 Salix brachista HOM05D005162 ORTHO05D007064 1.4e-147 526.6 367 71.9
SalBow8G3448 Salvia bowleyana HOM05D005162 ORTHO05D007064 1.4e-147 526.6 333 78.1
QL02p099940 Quercus lobata HOM05D005162 ORTHO05D007064 1.9e-147 526.2 319 81.5
Cfa005485 Carpinus fangiana HOM05D005162 ORTHO05D007064 3.2e-147 525.4 331 79.2
Nn5g27579 Nelumbo nucifera HOM05D005162 ORTHO05D007064 4.2e-147 525.0 324 79.3
A01p20180 Brassica napus HOM05D005162 ORTHO05D007064 1.6e-146 523.1 318 78.6
FAN08G0254 Fragaria x ananassa HOM05D005162 ORTHO05D007064 2.1e-146 522.7 347 74.9
BraA01t01942Z Brassica rapa HOM05D005162 ORTHO05D007064 4.6e-146 521.5 337 75.4
TWI59G0454 Tripterygium wilfordii HOM05D005162 ORTHO05D007064 7.9e-146 520.8 319 80.9
BcaC09g50447 Brassica carinata HOM05D005162 ORTHO05D007064 5.1e-145 518.1 318 77.7
C01p25320 Brassica napus HOM05D005162 ORTHO05D007064 5.1e-145 518.1 318 77.7
AL6G41220 Arabidopsis lyrata HOM05D005162 ORTHO05D007064 6.7e-145 517.7 341 74.8
Thhalv10025663m.g Eutrema salsugineum HOM05D005162 ORTHO05D007064 6.7e-145 517.7 318 78.3
CARHR287310 Cardamine hirsuta HOM05D005162 ORTHO05D007064 1.5e-144 516.5 320 78.4
HPP92_001076 Vanilla planifolia HOM05D005162 ORTHO05D007064 1.9e-144 516.2 330 75.5
Carub.0006s2628 Capsella rubella HOM05D005162 ORTHO05D007064 2.5e-144 515.8 322 77.0
PGSC0003DMG400024901 Solanum tuberosum HOM05D005162 ORTHO05D007064 2.5e-144 515.8 333 76.0
FAN13G0306 Fragaria x ananassa HOM05D005162 ORTHO05D007064 7.4e-144 514.2 347 74.4
Aa31LG3G14040 Aethionema arabicum HOM05D005162 ORTHO05D007064 9.6e-144 513.8 325 76.6
AT4G06599 Arabidopsis thaliana HOM05D005162 ORTHO05D007064 9.6e-144 513.8 341 73.9
Solyc01g103850.4 Solanum lycopersicum HOM05D005162 ORTHO05D007064 2.1e-143 512.7 332 75.6
Sopen01g046230 Solanum pennellii HOM05D005162 ORTHO05D007064 2.1e-143 512.7 333 75.4
Potri.003G011300 Populus trichocarpa HOM05D005162 ORTHO05D007064 2.8e-143 512.3 324 76.9
Rhsim11G0126200 Rhododendron simsii HOM05D005162 ORTHO05D007064 4.8e-143 511.5 374 68.2
BolC1t02482H Brassica oleracea HOM05D005162 ORTHO05D007064 8.1e-143 510.8 315 77.5
Nitab4.5_0000948g0210 Nicotiana tabacum HOM05D005162 ORTHO05D007064 1.1e-142 510.4 372 69.9
AUR62041110 Chenopodium quinoa HOM05D005162 ORTHO05D007064 5.3e-142 508.1 371 69.3
Sabra03G0007400 Salix brachista HOM05D005162 ORTHO05D007064 1.5e-141 506.5 321 77.6
unitig_749.g14130 Utricularia gibba HOM05D005162 ORTHO05D007064 1.5e-141 506.5 322 75.5
Sabra03G0006800 Salix brachista HOM05D005162 ORTHO05D007064 2.0e-141 506.1 321 77.6
Actinidia39017 Actinidia chinensis HOM05D005162 ORTHO05D007064 7.6e-141 504.2 335 75.5
Migut.B00805 Erythranthe guttata HOM05D005162 ORTHO05D007064 1.7e-140 503.1 318 77.4
ATR1134G078 Amborella trichopoda HOM05D005162 ORTHO05D007064 8.4e-140 500.7 332 74.7
SGA_v2.0_scaffold338G49226 Striga asiatica HOM05D005162 ORTHO05D007064 8.4e-140 500.7 336 73.8
Haze_01819 Corylus avellana HOM05D005162 ORTHO05D007064 4.2e-139 498.4 397 66.5
BcaNung03473 Brassica carinata HOM05D005162 ORTHO05D007064 1.2e-138 496.9 304 78.6
CSS0029208 Camellia sinensis var. sinensis HOM05D005162 ORTHO05D007064 3.0e-137 492.3 332 74.4
Dinv01848 Davidia involucrata HOM05D005162 ORTHO05D007064 1.5e-136 490.0 316 76.9
CDE08G1137 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 4.5e-133 478.4 320 73.4
Nitab4.5_0002698g0020 Nicotiana tabacum HOM05D005162 ORTHO05D007064 1.6e-130 469.9 335 71.9
BcaNung00113 Brassica carinata HOM05D005162 ORTHO05D007064 2.1e-130 469.5 337 70.9
SMO358G0515 Selaginella moellendorffii HOM05D005162 ORTHO05D007064 3.5e-130 468.8 333 69.1
Os01g0875400 Oryza sativa ssp. japonica HOM05D005162 ORTHO05D007064 8.2e-127 457.6 325 69.2
Zm00001eb366430 Zea mays HOM05D005162 ORTHO05D007064 7.2e-123 444.5 333 65.5
Mapoly0019s0035 Marchantia polymorpha HOM05D005162 ORTHO05D007064 2.5e-120 436.0 320 66.6
Pp3c1_27970 Physcomitrium patens HOM05D005162 ORTHO05D007064 3.1e-118 429.1 335 63.3
GSVIVG01023290001 Vitis vinifera HOM05D005162 ORTHO05D007064 1.2e-117 427.2 248 82.7
Oeu032113.1 Olea europaea HOM05D005162 ORTHO05D007064 2.0e-117 426.4 248 82.3
Lj5C260G15 Lonicera japonica HOM05D005162 ORTHO05D007064 6.1e-114 414.8 243 80.7
HanXRQChr10g0294691 Helianthus annuus HOM05D005162 ORTHO05D007064 1.4e-113 413.7 247 81.4
vmacro01733 Vaccinium macrocarpon HOM05D005162 ORTHO05D007064 3.9e-113 412.1 248 78.6
CDE08G1585 Ceratophyllum demersum HOM05D005162 ORTHO05D007064 1.6e-109 400.2 299 67.9
CsaV3_5G029930 Cucumis sativus L. HOM05D005162 ORTHO05D007064 2.9e-108 396.0 316 63.3
Sabra03G0007100 Salix brachista HOM05D005162 ORTHO05D007064 3.8e-108 395.6 367 59.4
EL10Ac6g13975 Beta vulgaris HOM05D005162 ORTHO05D007064 3.3e-104 382.5 318 61.6
MBI09_g07124_MAGBIO Magnolia biondii HOM05D005162 ORTHO05D007064 3.3e-104 382.5 333 62.5
CAN.G798.38 Capsicum annuum HOM05D005162 ORTHO05D007064 1.3e-103 380.6 242 75.2
MCO16G506 Micromonas commoda HOM05D005162 ORTHO05D007064 1.2e-90 337.4 319 56.4
SEGI_09590 Sequoiadendron giganteum HOM05D005162 ORTHO05D007064 8.8e-89 331.3 203 78.8
BcaNung03475 Brassica carinata HOM05D005162 ORTHO05D007064 7.3e-83 311.6 232 66.8
Haze_26359 Corylus avellana HOM05D005162 ORTHO05D007064 3.9e-68 262.7 323 44.9
Lsat_1_v5_gn_1_60880 Lactuca sativa HOM05D005162 ORTHO05D007064 1.1e-67 261.2 214 64.5
CBR_g37945 Chara braunii HOM05D005162 ORTHO05D000497 3.3e-67 259.6 182 68.7
Cre04.g228900 Chlamydomonas reinhardtii HOM05D005162 ORTHO05D007064 1.5e-64 250.8 263 49.8
Oeu049835.1 Olea europaea HOM05D005162 ORTHO05D007064 2.2e-63 246.9 134 86.6
PRCOL_00006478 Prasinoderma coloniale HOM05D005162 ORTHO05D007064 6.4e-63 245.4 316 46.8
Hma1.2p1_1108F.1_g257830 Hydrangea macrophylla HOM05D005162 ORTHO05D007064 1.6e-61 240.7 138 82.6
EL10As26g24245 Beta vulgaris HOM05D005162 ORTHO05D007064 1.5e-56 224.2 127 81.1
AagrBONN_evm.TU.Sc2ySwM_368.1617 Anthoceros agrestis HOM05D005162 ORTHO05D007064 3.5e-53 213.0 241 48.5
FAN14G4428 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.4e-39 165.2 129 65.1
FvH4_6g22010 Fragaria vesca HOM05D005162 ORTHO05D007064 2.4e-38 163.7 129 64.3
FvH4_1g28920 Fragaria vesca HOM05D005162 ORTHO05D012874 7.9e-37 158.7 113 69.0
FAN09G4282 Fragaria x ananassa HOM05D005162 ORTHO05D007064 3.0e-36 156.8 137 60.6
FAN06G2257 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.7e-36 155.2 122 64.8
FAN06G4878 Fragaria x ananassa HOM05D005162 ORTHO05D007064 8.7e-36 155.2 122 64.8
FvH4_7g16790 Fragaria vesca HOM05D005162 ORTHO05D007064 9.6e-35 151.8 122 63.1
EL10Ac9g22557 Beta vulgaris HOM05D005162 ORTHO05D007064 1.6e-34 151.0 98 74.5
MD08G1239400 Malus domestica HOM05D005162 ORTHO05D007064 1.4e-33 147.9 109 68.8
CBR_g37944 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-33 147.5 162 46.9
Lsat_1_v5_gn_1_60640 Lactuca sativa HOM05D005162 ORTHO05D007064 1.3e-26 124.8 181 45.3
FvH4_7g16160 Fragaria vesca HOM05D005162 ORTHO05D007064 1.5e-24 117.9 96 62.5
Zm00001eb146120 Zea mays HOM05D005162 ORTHO05D007064 3.5e-21 106.7 78 65.4
BraA03t14123Z Brassica rapa HOM05D005162 ORTHO05D007064 3.0e-20 103.6 72 69.4
Solyc01g058590.1 Solanum lycopersicum HOM05D005162 ORTHO05D027610 1.1e-19 101.7 77 64.9
Haze_10322 Corylus avellana HOM05D002370 ORTHO05D003878 1.9e-19 100.9 75 70.7
MD08G1239500 Malus domestica HOM05D005162 ORTHO05D007064 3.7e-18 96.7 83 63.9
Sopen01g024260 Solanum pennellii HOM05D005162 ORTHO05D027610 4.5e-16 89.7 77 57.1
Lsat_1_v5_gn_1_60800 Lactuca sativa HOM05D005162 ORTHO05D007064 5.0e-15 86.3 178 37.6
BcaB01g02499 Brassica carinata HOM05D005162 ORTHO05D027610 2.5e-14 84.0 60 66.7
C07p48650 Brassica napus HOM05D005162 ORTHO05D007064 3.2e-14 83.6 65 63.1
LjContig00141g0011565 Lotus japonicus HOM05D005162 ORTHO05D236084 3.9e-12 76.6 60 68.3
Cfa012958 Carpinus fangiana HOM05D005162 ORTHO05D027610 1.5e-11 74.7 55 70.9
BcaB05g22040 Brassica carinata HOM05D005162 ORTHO05D094949 8.5e-07 58.9 50 56.0
BcaB07g32185 Brassica carinata HOM05D005162 ORTHO05D000065 3.2e-06 57.0 51 52.9
SMO115G0326 Selaginella moellendorffii HOM05D011895 ORTHO05D374257 5.5e-06 56.2 165 27.3
SMO115G0039 Selaginella moellendorffii HOM05D005162 ORTHO05D376677 9.4e-06 55.5 163 28.2


User provided reference genes

Program Settings