Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G246500 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 1.0e-82 310.1 160 100.0
VMungo0251G2717 Vigna mungo HOM05D005932 ORTHO05D006213 2.1e-72 275.8 160 90.6
Glyma.05G166000 Glycine max HOM05D005932 ORTHO05D006213 1.7e-58 229.6 161 79.5
Glyma.08G124100 Glycine max HOM05D005932 ORTHO05D006213 4.3e-57 224.9 165 75.8
Lj4g0014090 Lotus japonicus HOM05D005932 ORTHO05D006213 2.4e-39 166.0 167 61.7
Ca_17852_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 1.7e-37 159.8 154 63.0
Medtr8g088330 Medicago truncatula HOM05D005932 ORTHO05D006213 3.8e-37 158.7 154 57.1
Psat7g064920 Pisum sativum HOM05D005932 ORTHO05D006213 1.6e-35 153.3 157 59.2
TPR.G6729 Trifolium pratense HOM05D005932 ORTHO05D006213 3.6e-32 142.1 159 52.2
Lalb_Chr07g0185951 Lupinus albus HOM05D005932 ORTHO05D006213 1.0e-26 124.0 158 48.1
VMungo0540G1966 Vigna mungo HOM05D005932 ORTHO05D006213 7.9e-19 97.8 156 46.8
ClCG03G006250 Citrullus lanatus HOM05D005932 ORTHO05D006213 4.3e-17 92.0 159 46.5
Lj6g0008899 Lotus japonicus HOM05D005932 ORTHO05D006213 1.3e-16 90.5 111 54.1
COL.COLO4_26835 Corchorus olitorius HOM05D005932 ORTHO05D006213 1.6e-16 90.1 112 48.2
Atru.chr10.845 Acer truncatum HOM05D005932 ORTHO05D006213 2.1e-16 89.7 127 44.1
CiPaw.09G141700 Carya illinoinensis HOM05D005932 ORTHO05D006213 1.4e-15 87.0 145 44.1
Sed0018131 Sechium edule HOM05D005932 ORTHO05D006213 1.4e-15 87.0 127 43.3
Manes.14G123400 Manihot esculenta HOM05D005932 ORTHO05D006213 2.4e-15 86.3 133 45.1
Glyma.15G130200 Glycine max HOM05D005932 ORTHO05D006213 4.0e-15 85.5 144 44.4
Sed0022461 Sechium edule HOM05D005932 ORTHO05D006213 1.2e-14 84.0 145 45.5
Phvul.006G128300 Phaseolus vulgaris HOM05D005932 ORTHO05D006213 1.5e-14 83.6 126 46.8
MD10G1253000 Malus domestica HOM05D005932 ORTHO05D006213 2.6e-14 82.8 132 40.9
Prupe.4G090500 Prunus persica HOM05D005932 ORTHO05D006213 2.6e-14 82.8 128 43.8
Sed0024512 Sechium edule HOM05D005932 ORTHO05D006213 2.6e-14 82.8 131 45.0
MELO3C007074.2 Cucumis melo HOM05D005932 ORTHO05D006213 4.5e-14 82.0 125 40.8
TWI15G0856 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 1.7e-13 80.1 111 45.9
Glyma.09G024200 Glycine max HOM05D005932 ORTHO05D006213 2.2e-13 79.7 158 38.6
TWI38G2281 Tripterygium wilfordii HOM05D005932 ORTHO05D006213 2.9e-13 79.3 137 46.0
Medtr2g030220 Medicago truncatula HOM05D005932 ORTHO05D006213 3.8e-13 79.0 127 44.1
Gohir.D10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 6.5e-13 78.2 148 39.9
Thecc.06G002100 Theobroma cacao HOM05D005932 ORTHO05D006213 6.5e-13 78.2 110 44.5
arahy.Tifrunner.gnm1.ann1.2W5S4G Arachis hypogaea HOM05D005932 ORTHO05D006213 1.1e-12 77.4 166 39.8
Gorai.011G004600 Gossypium raimondii HOM05D005932 ORTHO05D006213 1.1e-12 77.4 148 39.2
Duzib235G1239 Durio zibethinus HOM05D005932 ORTHO05D006213 1.4e-12 77.0 129 40.3
TPR.G26337 Trifolium pratense HOM05D005932 ORTHO05D006213 1.4e-12 77.0 113 50.4
Gohir.A10G004200 Gossypium hirsutum HOM05D005932 ORTHO05D006213 2.5e-12 76.3 122 42.6
MD05G1272900 Malus domestica HOM05D005932 ORTHO05D006213 2.5e-12 76.3 120 44.2
Hma1.2p1_0067F.1_g037010 Hydrangea macrophylla HOM05D005932 ORTHO05D006213 3.2e-12 75.9 127 43.3
arahy.Tifrunner.gnm1.ann1.JX8F6E Arachis hypogaea HOM05D005932 ORTHO05D006213 4.2e-12 75.5 163 39.3
CSS0012768 Camellia sinensis var. sinensis HOM05D005932 ORTHO05D006213 4.2e-12 75.5 133 40.6
ClCG01G025150 Citrullus lanatus HOM05D005932 ORTHO05D006213 1.2e-11 73.9 123 43.1
CANSAT35G0096 Cannabis sativa HOM05D005932 ORTHO05D006213 3.5e-11 72.4 131 42.7
Manes.06G068200 Manihot esculenta HOM05D005932 ORTHO05D006213 1.0e-10 70.9 136 36.8
CsaV3_1G037320 Cucumis sativus L. HOM05D005932 ORTHO05D006213 3.0e-10 69.3 135 44.4
FAN11G2171 Fragaria x ananassa HOM05D005932 ORTHO05D006213 3.0e-10 69.3 134 38.1
MBI18_g11291_MAGBIO Magnolia biondii HOM05D005932 ORTHO05D006213 3.0e-10 69.3 112 43.8
Gohir.A03G081000 Gossypium hirsutum HOM05D005932 ORTHO05D006213 5.1e-10 68.6 107 42.1
Gohir.D02G103800 Gossypium hirsutum HOM05D005932 ORTHO05D006213 5.1e-10 68.6 106 41.5
RcHm_v2.0_Chr5g0016051 Rosa chinensis HOM05D005932 ORTHO05D006213 5.1e-10 68.6 130 36.9
Dinv10792 Davidia involucrata HOM05D005932 ORTHO05D006213 6.7e-10 68.2 118 46.6
SGA_v2.0_scaffold223G42865 Striga asiatica HOM05D005932 ORTHO05D006213 6.7e-10 68.2 131 38.9
CiPaw.10G109100 Carya illinoinensis HOM05D005932 ORTHO05D006213 8.7e-10 67.8 142 37.3
Actinidia31387 Actinidia chinensis HOM05D005932 ORTHO05D006213 1.1e-09 67.4 111 41.4
FAN21G2441 Fragaria x ananassa HOM05D005932 ORTHO05D006213 1.5e-09 67.0 131 37.4
Psat1g167520 Pisum sativum HOM05D005932 ORTHO05D006213 1.5e-09 67.0 147 40.1
Gorai.005G117900 Gossypium raimondii HOM05D005932 ORTHO05D006213 2.5e-09 66.2 106 40.6
Lsat_1_v5_gn_2_93200 Lactuca sativa HOM05D005932 ORTHO05D006213 2.5e-09 66.2 109 45.0
Nitab4.5_0004734g0050 Nicotiana tabacum HOM05D005932 ORTHO05D006213 2.5e-09 66.2 128 37.5
Sabra11G0088800 Salix brachista HOM05D005932 ORTHO05D006213 3.3e-09 65.9 132 35.6
Nitab4.5_0005178g0030 Nicotiana tabacum HOM05D005932 ORTHO05D006213 7.4e-09 64.7 149 35.6
CsaV3_6G052360 Cucumis sativus L. HOM05D005932 ORTHO05D006213 9.7e-09 64.3 106 39.6
FvH4_3g10110 Fragaria vesca HOM05D005932 ORTHO05D006213 1.3e-08 63.9 135 37.0
Cfa000817 Carpinus fangiana HOM05D005932 ORTHO05D006213 1.6e-08 63.5 158 35.4
Haze_05823 Corylus avellana HOM05D005932 ORTHO05D006213 1.6e-08 63.5 166 35.5
TAR626G0301 Trochodendron aralioides HOM05D005932 ORTHO05D006213 1.6e-08 63.5 120 40.0
Eucgr.D00155 Eucalyptus grandis HOM05D005932 ORTHO05D006213 2.2e-08 63.2 128 37.5
MSTRG.13271 Avicennia marina HOM05D005932 ORTHO05D006213 2.8e-08 62.8 130 39.2
AL7G32200 Arabidopsis lyrata HOM05D005932 ORTHO05D006213 3.7e-08 62.4 120 40.0
C07p51350 Brassica napus HOM05D005932 ORTHO05D006213 3.7e-08 62.4 133 36.1
Potri.011G095000 Populus trichocarpa HOM05D005932 ORTHO05D006213 3.7e-08 62.4 128 37.5
Ca_00842_v3 Cicer arietinum L. HOM05D005932 ORTHO05D006213 4.8e-08 62.0 113 38.9
BraA03t14366Z Brassica rapa HOM05D005932 ORTHO05D006213 6.3e-08 61.6 115 35.7
Lalb_Chr18g0057981 Lupinus albus HOM05D005932 ORTHO05D006213 6.3e-08 61.6 125 36.0
Actinidia32363 Actinidia chinensis HOM05D005932 ORTHO05D006213 8.2e-08 61.2 126 38.9
BcaC06g30675 Brassica carinata HOM05D005932 ORTHO05D006213 8.2e-08 61.2 129 38.0
Rhsim02G0161400 Rhododendron simsii HOM05D005932 ORTHO05D006213 8.2e-08 61.2 111 37.8
Sp7g19900 Schrenkiella parvula HOM05D005932 ORTHO05D006213 8.2e-08 61.2 126 38.9
Nitab4.5_0004615g0090 Nicotiana tabacum HOM05D005932 ORTHO05D006213 1.1e-07 60.8 115 39.1
Eucgr.D00169 Eucalyptus grandis HOM05D005932 ORTHO05D006213 1.8e-07 60.1 119 39.5
Manes.05G115000 Manihot esculenta HOM05D005932 ORTHO05D006213 1.8e-07 60.1 123 32.5
SGA_v2.0_scaffold1G00270 Striga asiatica HOM05D005932 ORTHO05D006213 1.8e-07 60.1 149 34.2
A03p52900 Brassica napus HOM05D005932 ORTHO05D006213 5.3e-07 58.5 115 34.8
PGSC0003DMG400011812 Solanum tuberosum HOM05D005932 ORTHO05D006213 5.3e-07 58.5 124 35.5
unitig_37.g12073 Utricularia gibba HOM05D005932 ORTHO05D006213 6.9e-07 58.2 139 34.5
BcaNung00838 Brassica carinata HOM05D005932 ORTHO05D006213 9.0e-07 57.8 116 34.5
BcaNung00840 Brassica carinata HOM05D005932 ORTHO05D006213 9.0e-07 57.8 116 34.5
BolC7t45634H Brassica oleracea HOM05D005932 ORTHO05D006213 9.0e-07 57.8 116 34.5
DCAR_003852 Daucus carota HOM05D005932 ORTHO05D006213 9.0e-07 57.8 123 36.6
unitig_92.g28172 Utricularia gibba HOM05D005932 ORTHO05D006213 9.0e-07 57.8 111 41.4
PGR083G0615 Punica granatum HOM05D005932 ORTHO05D006213 1.5e-06 57.0 129 36.4
SalBow8G0055 Salvia bowleyana HOM05D005932 ORTHO05D006213 1.5e-06 57.0 131 39.7
MSTRG.16291 Avicennia marina HOM05D005932 ORTHO05D006213 3.4e-06 55.8 128 36.7
Solyc02g024010.1 Solanum lycopersicum HOM05D005932 ORTHO05D006213 3.4e-06 55.8 118 35.6
AT4G21740 Arabidopsis thaliana HOM05D005932 ORTHO05D006213 4.5e-06 55.5 120 38.3
MELO3C002809.2 Cucumis melo HOM05D005932 ORTHO05D006213 5.9e-06 55.1 90 46.7
Migut.M01897 Erythranthe guttata HOM05D005932 ORTHO05D006213 5.9e-06 55.1 137 36.5
A09p35930 Brassica napus HOM05D012212 ORTHO05D006213 7.7e-06 54.7 127 40.2
CARHR228470 Cardamine hirsuta HOM05D005932 ORTHO05D006213 7.7e-06 54.7 130 32.3
MBI02_g25782_MAGBIO Magnolia biondii HOM05D005932 ORTHO05D006213 7.7e-06 54.7 115 40.9
BcaB07g32663 Brassica carinata HOM05D012212 ORTHO05D006213 1.0e-05 54.3 124 39.5


User provided reference genes

Program Settings