Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 4.3e-49 197.6 94 100.0
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 1.6e-35 152.5 94 79.8
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 3.5e-35 151.4 94 77.7
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 3.1e-31 138.3 89 75.3
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 1.8e-26 122.5 88 70.5
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 2.3e-26 122.1 83 71.1
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 4.8e-24 114.4 84 64.3
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 3.1e-23 111.7 86 64.0
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 4.0e-23 111.3 86 64.0
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 9.0e-23 110.2 83 62.7
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.2e-22 109.8 93 57.0
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 3.4e-22 108.2 88 60.2
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 4.5e-22 107.8 90 60.0
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 1.0e-21 106.7 83 62.7
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 1.7e-21 105.9 83 66.3
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.2e-21 105.5 84 61.9
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.9e-21 105.1 84 61.9
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.8e-21 104.8 84 61.9
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 8.4e-21 103.6 91 59.3
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 1.1e-20 103.2 89 59.6
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.5e-20 102.1 91 53.8
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 7.1e-20 100.5 83 57.8
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.2e-19 99.8 83 59.0
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.6e-19 99.4 66 66.7
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 1.6e-19 99.4 82 59.8
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.1e-19 99.0 82 57.3
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 4.6e-19 97.8 84 56.0
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 6.0e-19 97.4 91 52.7
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 7.9e-19 97.1 84 58.3
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 7.9e-19 97.1 87 59.8
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.3e-18 96.3 89 52.8
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 1.3e-18 96.3 88 54.5
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 3.0e-18 95.1 90 54.4
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 5.1e-18 94.4 70 62.9
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.1e-17 93.2 71 64.8
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 4.3e-17 91.3 78 55.1
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 4.3e-17 91.3 85 52.9
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 5.7e-17 90.9 80 56.2
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 5.7e-17 90.9 82 56.1
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 7.4e-17 90.5 58 74.1
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 9.7e-17 90.1 78 52.6
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.3e-16 89.7 73 57.5
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 1.3e-16 89.7 75 57.3
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.2e-16 89.0 77 59.7
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 2.2e-16 89.0 58 72.4
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 2.2e-16 89.0 79 58.2
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 2.8e-16 88.6 79 58.2
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 4.8e-16 87.8 87 52.9
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 4.8e-16 87.8 75 58.7
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 4.8e-16 87.8 68 61.8
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 4.8e-16 87.8 92 48.9
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 6.3e-16 87.4 79 53.2
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 8.2e-16 87.0 68 63.2
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 8.2e-16 87.0 73 56.2
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 1.1e-15 86.7 87 49.4
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.1e-15 86.7 91 54.9
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 1.4e-15 86.3 89 53.9
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.4e-15 86.3 77 58.4
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 1.8e-15 85.9 92 52.2
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 1.8e-15 85.9 92 52.2
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 2.4e-15 85.5 84 48.8
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 3.1e-15 85.1 95 53.7
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 3.1e-15 85.1 95 53.7
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 3.1e-15 85.1 85 49.4
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 3.1e-15 85.1 89 48.3
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 4.1e-15 84.7 92 52.2
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 4.1e-15 84.7 77 51.9
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 5.3e-15 84.3 92 47.8
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 6.9e-15 84.0 85 54.1
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 9.0e-15 83.6 65 58.5
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 9.0e-15 83.6 92 47.8
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 1.5e-14 82.8 79 50.6
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 2.0e-14 82.4 61 62.3
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 2.0e-14 82.4 83 53.0
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 2.0e-14 82.4 58 69.0
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 2.0e-14 82.4 58 69.0
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 2.6e-14 82.0 78 51.3
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 3.4e-14 81.6 75 57.3
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 3.4e-14 81.6 68 54.4
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 4.5e-14 81.3 68 60.3
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.5e-14 81.3 92 47.8
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 5.9e-14 80.9 77 55.8
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 5.9e-14 80.9 79 51.9
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 5.9e-14 80.9 90 54.4
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 7.7e-14 80.5 90 42.2
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 7.7e-14 80.5 88 47.7
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 1.0e-13 80.1 65 60.0
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 1.0e-13 80.1 83 50.6
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.0e-13 80.1 65 61.5
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 1.0e-13 80.1 88 43.2
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 1.0e-13 80.1 85 50.6
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 1.3e-13 79.7 64 56.2
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 1.3e-13 79.7 64 56.2
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 1.3e-13 79.7 90 42.2
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.3e-13 79.7 83 51.8
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 1.3e-13 79.7 75 52.0
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 1.7e-13 79.3 65 55.4
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.7e-13 79.3 88 47.7
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 2.9e-13 78.6 64 57.8
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 2.9e-13 78.6 82 53.7
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 5.0e-13 77.8 84 51.2
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 6.5e-13 77.4 67 50.7
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 6.5e-13 77.4 90 47.8
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 1.1e-12 76.6 77 48.1
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.1e-12 76.6 96 46.9
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.1e-12 76.6 96 46.9
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 1.1e-12 76.6 90 47.8
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 1.1e-12 76.6 55 65.5
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 1.4e-12 76.3 89 47.2
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.4e-12 76.3 83 54.2
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 1.4e-12 76.3 81 49.4
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 1.4e-12 76.3 88 39.8
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 1.9e-12 75.9 79 51.9
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 2.5e-12 75.5 65 55.4
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 3.2e-12 75.1 85 49.4
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 4.2e-12 74.7 81 48.1
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 4.2e-12 74.7 61 65.6
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 4.2e-12 74.7 83 45.8
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 4.2e-12 74.7 62 61.3
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 4.2e-12 74.7 80 52.5
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 5.5e-12 74.3 67 50.7
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 5.5e-12 74.3 87 48.3
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 7.2e-12 73.9 84 51.2
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 7.2e-12 73.9 86 44.2
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 9.4e-12 73.6 96 45.8
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 1.2e-11 73.2 70 50.0
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.2e-11 73.2 75 49.3
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.7e-11 72.0 88 44.3
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 6.1e-11 70.9 97 45.4
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 6.1e-11 70.9 88 44.3
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.8e-10 69.3 75 45.3
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 1.8e-10 69.3 88 44.3
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 2.3e-10 68.9 64 53.1
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 3.0e-10 68.6 80 48.8
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 6.7e-10 67.4 48 66.7
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 1.1e-09 66.6 63 52.4
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 1.1e-09 66.6 61 55.7
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.0e-09 65.9 93 45.2
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 2.5e-09 65.5 61 55.7
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 5.7e-09 64.3 69 50.7
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 3.7e-08 61.6 54 57.4
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 1.1e-07 60.1 38 73.7
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 1.1e-07 60.1 43 65.1
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.4e-07 59.7 44 61.4
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.4e-07 58.9 68 48.5
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 2.4e-07 58.9 51 54.9
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 5.3e-07 57.8 46 58.7
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 6.9e-07 57.4 57 45.6


User provided reference genes

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