Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 5.1e-147 525.0 412 100.0
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 1.4e-75 287.7 394 69.5
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 1.7e-70 270.8 394 68.3
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 2.3e-70 270.4 394 68.3
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 3.0e-70 270.0 415 67.0
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 1.9e-69 267.3 413 70.9
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 3.3e-69 266.5 433 64.2
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 2.8e-68 263.5 390 65.6
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 6.2e-68 262.3 394 66.5
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 1.8e-67 260.8 394 67.8
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 2.4e-67 260.4 393 67.4
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 3.1e-67 260.0 393 63.1
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 6.9e-67 258.8 394 69.5
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 9.0e-67 258.5 396 62.9
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 5.8e-66 255.8 390 64.4
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 4.2e-64 249.6 391 66.2
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 5.5e-64 249.2 391 66.0
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 9.3e-64 248.4 394 69.0
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 9.3e-64 248.4 391 66.5
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 9.3e-64 248.4 391 66.5
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 2.7e-63 246.9 402 63.2
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 6.0e-63 245.7 405 62.2
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 7.9e-63 245.4 412 59.7
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 1.0e-62 245.0 411 63.0
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 5.1e-62 242.7 394 70.8
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.9e-61 240.7 391 65.2
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 2.5e-61 240.4 395 65.8
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 3.3e-61 240.0 391 64.7
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 7.4e-61 238.8 391 65.5
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 7.4e-61 238.8 390 61.8
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 9.6e-61 238.4 397 61.5
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 2.1e-60 237.3 394 67.3
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 3.7e-60 236.5 394 62.4
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 6.2e-60 235.7 392 65.3
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.4e-59 234.6 404 63.4
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 5.3e-59 232.6 398 62.3
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 6.9e-59 232.3 392 63.0
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 6.9e-59 232.3 392 64.5
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 1.5e-58 231.1 404 63.1
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 3.4e-58 229.9 401 61.6
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 4.5e-58 229.6 394 61.9
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 5.8e-58 229.2 394 63.7
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 5.8e-58 229.2 409 58.2
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 1.3e-57 228.0 411 62.5
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 1.3e-57 228.0 392 62.0
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 3.8e-57 226.5 402 59.2
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 4.9e-57 226.1 395 60.5
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 4.9e-57 226.1 395 61.5
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 1.1e-56 224.9 392 63.8
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 3.2e-56 223.4 393 62.1
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 3.2e-56 223.4 397 60.5
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 4.2e-56 223.0 388 63.1
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.2e-56 223.0 401 62.1
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 5.5e-56 222.6 395 60.8
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 7.1e-56 222.2 388 63.1
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.2e-55 221.5 404 58.2
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 1.6e-55 221.1 398 59.0
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 2.1e-55 220.7 336 68.2
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 7.9e-55 218.8 363 64.7
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 7.9e-55 218.8 392 58.7
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 1.0e-54 218.4 390 62.6
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.0e-54 218.4 399 59.4
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 1.0e-54 218.4 394 59.9
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 1.3e-54 218.0 394 62.4
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.8e-54 217.6 397 62.2
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 1.8e-54 217.6 399 62.4
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.3e-54 217.2 411 60.1
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 2.3e-54 217.2 393 61.3
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 2.3e-54 217.2 390 63.3
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 3.0e-54 216.9 392 61.5
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 5.1e-54 216.1 399 59.4
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 1.5e-53 214.5 371 62.0
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.9e-53 214.2 404 60.6
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 1.9e-53 214.2 409 58.2
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.9e-53 214.2 391 62.9
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 3.3e-53 213.4 411 59.6
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 4.3e-53 213.0 406 60.8
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 4.8e-52 209.5 393 62.1
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 6.3e-52 209.1 324 67.0
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 6.3e-52 209.1 411 59.4
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.4e-51 208.0 396 61.6
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 1.4e-51 208.0 393 59.3
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 3.1e-51 206.8 396 62.9
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 6.9e-51 205.7 375 66.9
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 9.0e-51 205.3 411 62.5
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 1.2e-50 204.9 324 66.4
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 5.9e-50 202.6 388 61.3
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 5.9e-50 202.6 399 59.1
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 5.9e-50 202.6 405 58.0
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 7.6e-50 202.2 391 60.6
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 2.9e-49 200.3 395 60.5
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 3.8e-49 199.9 392 61.7
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 6.5e-49 199.1 392 62.5
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 6.5e-49 199.1 392 62.0
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 8.5e-49 198.7 397 60.2
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 1.4e-48 198.0 367 62.4
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 3.2e-48 196.8 366 60.1
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 3.2e-48 196.8 395 60.0
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 9.3e-48 195.3 402 56.7
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 2.7e-47 193.7 398 56.5
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 2.7e-47 193.7 398 56.8
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 2.7e-47 193.7 398 56.8
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 2.7e-47 193.7 398 56.8
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 2.7e-47 193.7 398 56.5
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 2.3e-46 190.7 398 56.5
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 2.3e-46 190.7 398 56.5
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 2.3e-46 190.7 392 61.2
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 2.5e-45 187.2 403 55.3
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 5.7e-45 186.0 403 55.1
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 1.3e-44 184.9 325 62.8
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 1.6e-44 184.5 389 60.4
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 3.7e-44 183.3 391 56.8
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 6.3e-44 182.6 349 60.7
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 2.6e-42 177.2 401 58.1
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 2.2e-41 174.1 394 58.6
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 6.5e-41 172.6 326 61.0
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 1.9e-40 171.0 394 58.1
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 2.1e-39 167.5 120 81.7
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.4e-38 164.9 399 56.6
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 3.0e-38 163.7 399 57.4
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 6.7e-38 162.5 343 56.9
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 1.5e-37 161.4 292 69.2
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 5.7e-37 159.5 200 48.0
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 1.3e-36 158.3 405 55.8
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 2.8e-36 157.1 405 55.8
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 3.7e-36 156.8 403 50.9
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 4.8e-36 156.4 391 55.5
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 1.4e-35 154.8 398 57.5
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 2.4e-35 154.1 389 52.4
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 9.1e-35 152.1 411 57.2
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.3e-33 148.3 413 55.9
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.3e-33 148.3 413 55.9
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 2.2e-33 147.5 416 56.0
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 3.8e-33 146.7 421 49.9
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 6.5e-33 146.0 395 55.4
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 1.1e-32 145.2 394 37.1
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 1.0e-30 138.7 389 57.6
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 3.0e-30 137.1 404 35.1
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 1.8e-27 127.9 359 46.8
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 5.3e-27 126.3 341 55.1
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 1.2e-26 125.2 416 50.5
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 1.6e-26 124.8 421 51.1
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 2.6e-26 124.0 309 62.1
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 5.0e-25 119.8 203 41.4
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 1.1e-24 118.6 406 50.2
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 1.1e-24 118.6 244 68.4
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 3.2e-24 117.1 384 54.4
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 2.1e-23 114.4 198 39.4
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 4.7e-23 113.2 282 65.6
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 1.0e-22 112.1 336 56.5
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 7.5e-21 105.9 419 42.5
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 1.3e-20 105.1 170 40.0
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 3.7e-20 103.6 135 51.1
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 8.2e-20 102.4 103 52.4
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 7.0e-19 99.4 401 41.1
unitig_8.g4592 Utricularia gibba HOM05D004193 ORTHO05D004862 1.7e-17 94.7 118 45.8
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 2.2e-17 94.4 109 50.5
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 5.5e-16 89.7 239 69.9
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 1.6e-15 88.2 246 56.5
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 2.3e-14 84.3 408 47.8
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 3.0e-14 84.0 331 51.1
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 8.3e-12 75.9 335 49.9
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 2.4e-11 74.3 130 40.8
ATR0705G001 Amborella trichopoda HOM05D004193 ORTHO05D004862 1.2e-07 62.0 116 47.4
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 5.2e-06 56.6 148 35.8


User provided reference genes

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