Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 1.7e-38 162.2 80 100.0
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 1.7e-22 109.0 54 100.0
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 3.6e-20 101.3 53 94.3
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 8.2e-17 90.1 53 83.0
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 1.4e-16 89.4 53 81.1
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 3.5e-15 84.7 48 81.2
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 3.2e-13 78.2 54 68.5
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 9.4e-13 76.6 50 74.0
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 1.2e-12 76.3 52 71.2
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 1.6e-12 75.9 52 65.4
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.6e-12 75.9 52 65.4
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.6e-12 75.9 52 65.4
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.6e-12 75.9 52 65.4
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 1.6e-12 75.9 49 67.3
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 1.6e-12 75.9 52 65.4
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 2.1e-12 75.5 55 63.6
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 2.7e-12 75.1 48 68.8
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 2.7e-12 75.1 48 70.8
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 2.7e-12 75.1 52 65.4
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 6.1e-12 73.9 55 61.8
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 8.0e-12 73.6 52 67.3
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 8.0e-12 73.6 52 65.4
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 8.0e-12 73.6 52 63.5
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 8.0e-12 73.6 54 61.1
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 1.4e-11 72.8 53 60.4
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.4e-11 72.8 52 65.4
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 1.4e-11 72.8 49 65.3
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.8e-11 72.4 52 61.5
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 1.8e-11 72.4 48 64.6
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 2.3e-11 72.0 51 64.7
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 2.3e-11 72.0 48 66.7
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 3.0e-11 71.6 52 61.5
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 3.0e-11 71.6 52 61.5
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 3.0e-11 71.6 54 61.1
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 4.0e-11 71.2 56 58.9
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 4.0e-11 71.2 49 65.3
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 5.2e-11 70.9 48 70.8
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 5.2e-11 70.9 50 64.0
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 5.2e-11 70.9 52 63.5
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 6.7e-11 70.5 48 62.5
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 6.7e-11 70.5 54 57.4
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 8.8e-11 70.1 52 61.5
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.1e-10 69.7 56 55.4
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 1.1e-10 69.7 51 58.8
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 1.5e-10 69.3 48 66.7
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 1.5e-10 69.3 48 60.4
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 2.0e-10 68.9 52 57.7
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 2.0e-10 68.9 49 61.2
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 2.0e-10 68.9 52 59.6
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 2.6e-10 68.6 49 59.2
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 2.6e-10 68.6 49 57.1
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 3.3e-10 68.2 53 56.6
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 3.3e-10 68.2 52 55.8
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 4.4e-10 67.8 49 59.2
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 4.4e-10 67.8 49 59.2
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 4.4e-10 67.8 49 59.2
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 4.4e-10 67.8 49 63.3
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 4.4e-10 67.8 48 64.6
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 4.4e-10 67.8 48 64.6
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 4.4e-10 67.8 54 57.4
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 4.4e-10 67.8 54 57.4
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 5.7e-10 67.4 58 56.9
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 5.7e-10 67.4 49 57.1
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 5.7e-10 67.4 48 62.5
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 5.7e-10 67.4 52 59.6
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 5.7e-10 67.4 51 64.7
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 7.5e-10 67.0 49 59.2
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 7.5e-10 67.0 52 55.8
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 7.5e-10 67.0 52 55.8
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 7.5e-10 67.0 49 55.1
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 7.5e-10 67.0 53 60.4
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 9.7e-10 66.6 49 59.2
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 9.7e-10 66.6 48 58.3
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 9.7e-10 66.6 49 53.1
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 9.7e-10 66.6 49 53.1
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 9.7e-10 66.6 48 58.3
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 9.7e-10 66.6 48 58.3
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 1.3e-09 66.2 49 53.1
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 1.3e-09 66.2 49 53.1
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 1.3e-09 66.2 49 57.1
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 1.3e-09 66.2 55 56.4
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.7e-09 65.9 49 55.1
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.7e-09 65.9 48 58.3
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 1.7e-09 65.9 48 58.3
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 1.7e-09 65.9 48 62.5
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 1.7e-09 65.9 48 62.5
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 2.2e-09 65.5 52 55.8
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 2.2e-09 65.5 53 58.5
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 2.2e-09 65.5 52 57.7
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 2.8e-09 65.1 49 59.2
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 2.8e-09 65.1 54 53.7
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 3.7e-09 64.7 49 53.1
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 3.7e-09 64.7 49 57.1
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 3.7e-09 64.7 49 53.1
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 3.7e-09 64.7 49 55.1
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 4.8e-09 64.3 49 63.3
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 4.8e-09 64.3 49 53.1
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 4.8e-09 64.3 49 53.1
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 4.8e-09 64.3 49 53.1
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 6.3e-09 63.9 54 51.9
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 8.2e-09 63.5 51 54.9
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 8.2e-09 63.5 48 60.4
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 1.1e-08 63.2 49 59.2
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 1.4e-08 62.8 49 53.1
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 1.4e-08 62.8 49 55.1
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 1.4e-08 62.8 48 62.5
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 2.4e-08 62.0 55 54.5
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 2.4e-08 62.0 55 54.5
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 2.4e-08 62.0 49 61.2
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 3.1e-08 61.6 49 51.0
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 3.1e-08 61.6 49 57.1
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 3.1e-08 61.6 48 58.3
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 4.1e-08 61.2 49 53.1
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 4.1e-08 61.2 37 73.0
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 4.1e-08 61.2 50 54.0
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 5.3e-08 60.8 47 57.4
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 7.0e-08 60.5 42 57.1
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 7.0e-08 60.5 48 60.4
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 7.0e-08 60.5 48 60.4
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 9.1e-08 60.1 54 53.7
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 9.1e-08 60.1 57 56.1
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 1.2e-07 59.7 48 54.2
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 1.2e-07 59.7 54 51.9
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 1.6e-07 59.3 56 57.1
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 2.0e-07 58.9 41 63.4
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 2.7e-07 58.5 55 52.7
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.7e-07 58.5 48 56.2
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 3.5e-07 58.2 54 53.7
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 3.5e-07 58.2 54 53.7
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 4.5e-07 57.8 57 50.9
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 1.0e-06 56.6 49 55.1
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 2.9e-06 55.1 57 49.1


User provided reference genes

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