Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G234100 Phaseolus vulgaris HOM05D007781 ORTHO05D009769 3.6e-44 181.8 139 100.0
Glyma.07G196200 Glycine max HOM05D007781 ORTHO05D009769 8.9e-35 150.6 139 80.6
VMungo0251G3178 Vigna mungo HOM05D007781 ORTHO05D009769 4.4e-34 148.3 97 93.8
Lj4g0009430 Lotus japonicus HOM05D007781 ORTHO05D009769 6.0e-31 137.9 142 73.2
TPR.G12128 Trifolium pratense HOM05D007781 ORTHO05D009769 4.3e-29 131.7 139 74.1
Psat7g113680 Pisum sativum HOM05D007781 ORTHO05D009769 4.7e-28 128.3 139 67.6
arahy.Tifrunner.gnm1.ann1.KV0YZV Arachis hypogaea HOM05D007781 ORTHO05D009769 3.9e-22 108.6 123 75.6
arahy.Tifrunner.gnm1.ann1.QC0LUE Arachis hypogaea HOM05D007781 ORTHO05D009769 3.9e-22 108.6 123 74.8
Thecc.06G188400 Theobroma cacao HOM05D007781 ORTHO05D009769 8.6e-22 107.5 87 85.1
Dinv40553 Davidia involucrata HOM05D007781 ORTHO05D009769 1.6e-20 103.2 92 79.3
Duzib235G1462 Durio zibethinus HOM05D007781 ORTHO05D009769 6.2e-20 101.3 87 82.8
Ciclev10017149m.g Citrus clementina HOM05D007781 ORTHO05D009769 1.8e-19 99.8 92 77.2
COL.COLO4_31480 Corchorus olitorius HOM05D007781 ORTHO05D009769 1.8e-19 99.8 89 75.3
Gohir.A05G161900 Gossypium hirsutum HOM05D007781 ORTHO05D009769 1.8e-19 99.8 90 78.9
Gohir.D05G164700 Gossypium hirsutum HOM05D007781 ORTHO05D009769 1.8e-19 99.8 90 78.9
Gorai.009G169900 Gossypium raimondii HOM05D007781 ORTHO05D009769 1.8e-19 99.8 90 78.9
Prupe.4G046600 Prunus persica HOM05D007781 ORTHO05D009769 1.8e-19 99.8 92 78.3
MD05G1313200 Malus domestica HOM05D007781 ORTHO05D009769 2.4e-19 99.4 93 77.4
MD10G1295400 Malus domestica HOM05D007781 ORTHO05D009769 5.2e-19 98.2 93 76.3
CiPaw.09G059400 Carya illinoinensis HOM05D007781 ORTHO05D009769 1.2e-18 97.1 82 84.1
FvH4_3g09310 Fragaria vesca HOM05D007781 ORTHO05D009769 1.5e-18 96.7 85 81.2
FAN11G2776 Fragaria x ananassa HOM05D007781 ORTHO05D009769 1.5e-18 96.7 85 81.2
FAN16G0963 Fragaria x ananassa HOM05D007781 ORTHO05D009769 1.5e-18 96.7 85 81.2
FAN21G0375 Fragaria x ananassa HOM05D007781 ORTHO05D009769 1.5e-18 96.7 85 81.2
Hma1.2p1_0126F.1_g059410 Hydrangea macrophylla HOM05D007781 ORTHO05D009769 1.5e-18 96.7 88 79.5
RcHm_v2.0_Chr5g0008291 Rosa chinensis HOM05D007781 ORTHO05D009769 3.4e-18 95.5 87 78.2
GSVIVG01003209001 Vitis vinifera HOM05D007781 ORTHO05D009769 4.4e-18 95.1 97 72.2
CANSAT35G1759 Cannabis sativa HOM05D007781 ORTHO05D009769 1.3e-17 93.6 92 72.8
TAR627G0113 Trochodendron aralioides HOM05D007781 ORTHO05D009769 1.3e-17 93.6 87 78.2
CARHR228320 Cardamine hirsuta HOM05D007781 ORTHO05D009769 2.2e-17 92.8 83 83.1
Haze_06475 Corylus avellana HOM05D007781 ORTHO05D009769 3.8e-17 92.0 98 71.4
Actinidia05631 Actinidia chinensis HOM05D007781 ORTHO05D009769 4.9e-17 91.7 87 79.3
Sp7g19740 Schrenkiella parvula HOM05D007781 ORTHO05D009769 4.9e-17 91.7 85 81.2
Medtr4g088850 Medicago truncatula HOM05D007781 ORTHO05D009769 8.4e-17 90.9 116 74.1
PGR042G1810 Punica granatum HOM05D007781 ORTHO05D009769 1.4e-16 90.1 89 78.7
Thhalv10026412m.g Eutrema salsugineum HOM05D007781 ORTHO05D009769 5.4e-16 88.2 82 79.3
Manes.16G027000 Manihot esculenta HOM05D007781 ORTHO05D009769 5.4e-16 88.2 88 72.7
CsaV3_1G012280 Cucumis sativus L. HOM05D007781 ORTHO05D009769 9.3e-16 87.4 87 73.6
ClCG03G006020 Citrullus lanatus HOM05D007781 ORTHO05D009769 1.2e-15 87.0 87 74.7
Sed0016416 Sechium edule HOM05D007781 ORTHO05D009769 1.2e-15 87.0 87 73.6
THA.LOC104812795 Tarenaya hassleriana HOM05D007781 ORTHO05D009769 1.2e-15 87.0 85 75.3
A08p15070 Brassica napus HOM05D007781 ORTHO05D009769 1.6e-15 86.7 82 80.5
C03p83160 Brassica napus HOM05D001541 ORTHO05D009769 1.6e-15 86.7 82 80.5
MELO3C002600.2 Cucumis melo HOM05D007781 ORTHO05D009769 1.6e-15 86.7 92 70.7
Aa31LG6G3610 Aethionema arabicum HOM05D007781 ORTHO05D009769 2.1e-15 86.3 82 79.3
BcaB03g11687 Brassica carinata HOM05D001738 ORTHO05D001644 2.7e-15 85.9 82 79.3
Lalb_Chr16g0383721 Lupinus albus HOM05D007781 ORTHO05D009769 4.6e-15 85.1 89 71.9
CDE10G1000 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 6.0e-15 84.7 87 73.6
Cc02_g13310 Coffea canephora HOM05D007781 ORTHO05D009769 6.0e-15 84.7 87 75.9
Eucgr.E03314 Eucalyptus grandis HOM05D007781 ORTHO05D009769 6.0e-15 84.7 96 69.8
Oeu053970.1 Olea europaea HOM05D007781 ORTHO05D009769 7.8e-15 84.3 82 76.8
Nn1g06568 Nelumbo nucifera HOM05D007781 ORTHO05D009769 1.3e-14 83.6 87 74.7
AT4G21610 Arabidopsis thaliana HOM05D007781 ORTHO05D009769 1.7e-14 83.2 82 78.0
CAN.G1164.27 Capsicum annuum HOM05D007781 ORTHO05D009769 1.7e-14 83.2 82 76.8
AL7G32390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.3e-14 82.8 82 76.8
Hund21227 Selenicereus undatus HOM05D007781 ORTHO05D009769 2.3e-14 82.8 84 76.2
Nitab4.5_0003432g0040 Nicotiana tabacum HOM05D007781 ORTHO05D009769 3.0e-14 82.4 84 73.8
HPP92_027869 Vanilla planifolia HOM05D007781 ORTHO05D009769 3.0e-14 82.4 90 70.0
Potri.004G043100 Populus trichocarpa HOM05D007781 ORTHO05D009769 5.1e-14 81.6 85 71.8
Sc17g0006220 Simmondsia chinensis HOM05D007781 ORTHO05D009769 5.1e-14 81.6 82 76.8
Nitab4.5_0007940g0030 Nicotiana tabacum HOM05D007781 ORTHO05D009769 6.6e-14 81.3 84 73.8
PGSC0003DMG400029720 Solanum tuberosum HOM05D007781 ORTHO05D009769 6.6e-14 81.3 82 75.6
Sabra04G0026700 Salix brachista HOM05D007781 ORTHO05D009769 8.7e-14 80.9 85 70.6
BcaC01g00689 Brassica carinata HOM05D001738 ORTHO05D001644 3.3e-13 79.0 82 75.6
BolC3t20599H Brassica oleracea HOM05D007781 ORTHO05D009769 3.3e-13 79.0 82 75.6
SGA_v2.0_scaffold49G18292 Striga asiatica HOM05D007781 ORTHO05D009769 4.3e-13 78.6 89 70.8
MSTRG.14698 Avicennia marina HOM05D007781 ORTHO05D009769 5.6e-13 78.2 82 74.4
Carub.0007s1977 Capsella rubella HOM05D007781 ORTHO05D009769 5.6e-13 78.2 92 68.5
Sopen02g023130 Solanum pennellii HOM05D007781 ORTHO05D009769 5.6e-13 78.2 82 74.4
Migut.H01490 Erythranthe guttata HOM05D007781 ORTHO05D009769 1.3e-12 77.0 85 72.9
CDE10G0168 Ceratophyllum demersum HOM05D007781 ORTHO05D009769 1.6e-12 76.6 76 77.6
Solyc02g078270.3 Solanum lycopersicum HOM05D007781 ORTHO05D009769 4.8e-12 75.1 82 73.2
DCAR_028076 Daucus carota HOM05D007781 ORTHO05D009769 9.0e-11 70.9 37 83.8
Lsat_1_v5_gn_7_21141 Lactuca sativa HOM05D007781 ORTHO05D009769 3.4e-10 68.9 84 67.9
Aqoxy1G02434 Aquilegia oxysepala HOM05D007781 ORTHO05D009769 7.6e-10 67.8 82 72.0
Ca_18542_v3 Cicer arietinum L. HOM05D021202 ORTHO05D009769 1.7e-09 66.6 93 41.9
HanXRQChr04g0124061 Helianthus annuus HOM05D007781 ORTHO05D009769 4.9e-09 65.1 84 66.7
TWI38G0207 Tripterygium wilfordii HOM05D007781 ORTHO05D009769 4.9e-09 65.1 36 75.0
PSO541G0656 Papaver somniferum HOM05D007781 ORTHO05D009769 6.4e-09 64.7 85 63.5
Ah.14g089440 Amaranthus hybridus HOM05D007781 ORTHO05D009769 8.4e-09 64.3 33 81.8
PSO675G6168 Papaver somniferum HOM05D007781 ORTHO05D009769 1.4e-08 63.5 85 63.5
Os01g0612700 Oryza sativa ssp. japonica HOM05D021202 ORTHO05D009769 3.2e-08 62.4 82 67.1
Peaxi162Scf00736g00429 Petunia axillaris HOM05D007781 ORTHO05D009769 3.2e-08 62.4 34 79.4
unitig_744.g24534 Utricularia gibba HOM05D007781 ORTHO05D009769 4.2e-08 62.0 84 61.9
CSS0040858 Camellia sinensis var. sinensis HOM05D007781 ORTHO05D009769 5.4e-08 61.6 38 68.4
ECA236G0601 Erigeron canadensis HOM05D007781 ORTHO05D009769 5.4e-08 61.6 84 66.7
SHI01775 Sapria himalayana HOM05D007781 ORTHO05D009769 7.1e-08 61.2 41 65.9
Cfa000439 Carpinus fangiana HOM05D007781 ORTHO05D009769 1.6e-07 60.1 90 37.8
Sed0017721 Sechium edule HOM05D007781 ORTHO05D009769 2.1e-07 59.7 37 67.6
vmacro00338 Vaccinium macrocarpon HOM05D007781 ORTHO05D002106 3.5e-07 58.9 71 70.4
vmacro14163 Vaccinium macrocarpon HOM05D007781 ORTHO05D009769 3.5e-07 58.9 37 64.9
MELO3C007039.2 Cucumis melo HOM05D002138 ORTHO05D002106 6.0e-07 58.2 83 62.7
DCAR_008280 Daucus carota HOM05D002138 ORTHO05D002106 2.3e-06 56.2 37 62.2
TAR075G0006 Trochodendron aralioides HOM05D007781 ORTHO05D002106 2.3e-06 56.2 40 57.5
Gohir.A11G117400 Gossypium hirsutum HOM05D007781 ORTHO05D009769 3.0e-06 55.8 33 69.7


User provided reference genes

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