Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G224300 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 2.7e-141 505.4 260 100.0
VMungo0251G2507 Vigna mungo HOM05D004441 ORTHO05D003109 1.4e-105 386.7 260 80.4
Glyma.13G184100 Glycine max HOM05D004441 ORTHO05D003109 3.3e-67 259.2 271 61.6
Glyma.07G192300 Glycine max HOM05D004441 ORTHO05D003109 5.3e-57 225.3 268 57.1
Medtr4g089190 Medicago truncatula HOM05D004441 ORTHO05D003109 5.9e-40 168.7 270 48.9
Lj4g0026214 Lotus japonicus HOM05D004441 ORTHO05D003109 7.7e-40 168.3 280 46.4
Psat0s2678g0120 Pisum sativum HOM05D004441 ORTHO05D003109 1.7e-34 150.6 270 44.8
Lj6g0023239 Lotus japonicus HOM05D004441 ORTHO05D003109 2.4e-33 146.7 274 44.2
arahy.Tifrunner.gnm1.ann1.KXRU9A Arachis hypogaea HOM05D004441 ORTHO05D003109 5.9e-32 142.1 290 43.8
TPR.G36719 Trifolium pratense HOM05D004441 ORTHO05D003109 1.7e-31 140.6 282 41.5
Medtr2g012750 Medicago truncatula HOM05D004441 ORTHO05D003109 2.3e-31 140.2 275 41.8
Phvul.006G189700 Phaseolus vulgaris HOM05D004441 ORTHO05D003109 4.2e-30 136.0 275 41.8
Glyma.13G244100 Glycine max HOM05D004441 ORTHO05D003109 5.5e-30 135.6 278 41.0
VMungo0540G1643 Vigna mungo HOM05D004441 ORTHO05D003109 1.6e-29 134.0 280 42.1
Psat1g207120 Pisum sativum HOM05D004441 ORTHO05D003109 2.8e-29 133.3 276 42.0
Lalb_Chr15g0089961 Lupinus albus HOM05D004441 ORTHO05D003109 6.1e-29 132.1 284 43.7
Ca_00297_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 4.0e-28 129.4 275 40.7
Glyma.15G069600 Glycine max HOM05D004441 ORTHO05D003109 7.0e-25 118.6 278 39.9
Lalb_Chr20g0122111 Lupinus albus HOM05D004441 ORTHO05D003109 1.6e-24 117.5 307 37.8
Prupe.4G040000 Prunus persica HOM05D004441 ORTHO05D003109 1.6e-24 117.5 324 34.9
arahy.Tifrunner.gnm1.ann1.W0S7NR Arachis hypogaea HOM05D004441 ORTHO05D003109 2.0e-24 117.1 184 51.6
Lj1A1210T53 Lonicera japonica HOM05D004441 ORTHO05D003109 5.2e-20 102.4 288 37.5
CiPaw.09G160900 Carya illinoinensis HOM05D004441 ORTHO05D003109 1.5e-19 100.9 294 37.1
Lalb_Chr18g0059831 Lupinus albus HOM05D004441 ORTHO05D003109 2.0e-19 100.5 302 37.1
Hma1.2p1_0191F.1_g083410 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 4.4e-19 99.4 282 39.0
Hma1.2p1_2209F.1_g317155 Hydrangea macrophylla HOM05D004441 ORTHO05D003109 4.4e-19 99.4 282 39.0
Ca_18509_v3 Cicer arietinum L. HOM05D004441 ORTHO05D003109 2.2e-18 97.1 236 39.8
Gorai.009G171500 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.1e-17 94.7 305 35.7
Gohir.D05G166400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 2.4e-17 93.6 310 35.5
Sc17g0006420 Simmondsia chinensis HOM05D004441 ORTHO05D003109 2.4e-17 93.6 322 33.9
Gohir.A05G163400 Gossypium hirsutum HOM05D004441 ORTHO05D003109 1.2e-16 91.3 310 34.5
Manes.17G041200 Manihot esculenta HOM05D004441 ORTHO05D003109 1.2e-16 91.3 316 36.4
Duzib160G0195 Durio zibethinus HOM05D004441 ORTHO05D003109 1.6e-16 90.9 310 32.9
Duzib192G0975 Durio zibethinus HOM05D004441 ORTHO05D003109 2.7e-16 90.1 310 34.5
Nitab4.5_0001820g0050 Nicotiana tabacum HOM05D004441 ORTHO05D003109 2.7e-16 90.1 285 37.9
ClCG03G005640 Citrullus lanatus HOM05D004441 ORTHO05D003109 4.6e-16 89.4 290 35.5
MD10G1300500 Malus domestica HOM05D004441 ORTHO05D003109 4.6e-16 89.4 324 32.4
Aqoxy1G02647 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 6.0e-16 89.0 327 33.6
Nitab4.5_0007319g0010 Nicotiana tabacum HOM05D004441 ORTHO05D003109 6.0e-16 89.0 275 36.7
Sed0013174 Sechium edule HOM05D004441 ORTHO05D003109 6.0e-16 89.0 245 37.6
Gorai.010G150800 Gossypium raimondii HOM05D004441 ORTHO05D003109 1.7e-15 87.4 297 35.0
TPR.G32407 Trifolium pratense HOM05D004441 ORTHO05D003109 1.7e-15 87.4 190 40.5
Dinv40519 Davidia involucrata HOM05D004441 ORTHO05D003109 3.0e-15 86.7 274 35.0
Gohir.D06G129200 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.0e-15 86.7 297 35.0
Gohir.A06G124300 Gossypium hirsutum HOM05D004441 ORTHO05D003109 3.9e-15 86.3 297 34.7
Thecc.06G194800 Theobroma cacao HOM05D004441 ORTHO05D003109 3.9e-15 86.3 307 32.9
DCAR_004123 Daucus carota HOM05D004441 ORTHO05D003109 6.6e-15 85.5 275 34.2
TAR629G3100 Trochodendron aralioides HOM05D004441 ORTHO05D003109 1.1e-14 84.7 301 32.2
TWI38G0459 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 4.7e-13 79.3 308 32.5
TAR627G0319 Trochodendron aralioides HOM05D004441 ORTHO05D003109 6.2e-13 79.0 226 35.8
PGR004G2153 Punica granatum HOM05D004441 ORTHO05D003109 1.4e-12 77.8 333 34.2
CsaV3_1G011910 Cucumis sativus L. HOM05D004441 ORTHO05D003109 1.8e-12 77.4 293 33.1
ClCG00G003130 Citrullus lanatus HOM05D004441 ORTHO05D003109 2.3e-12 77.0 293 32.4
ClCG01G022730 Citrullus lanatus HOM05D004441 ORTHO05D003109 2.3e-12 77.0 293 32.4
COL.COLO4_31538 Corchorus olitorius HOM05D004441 ORTHO05D003109 2.3e-12 77.0 319 29.2
Nn1g06687 Nelumbo nucifera HOM05D004441 ORTHO05D003109 2.3e-12 77.0 222 34.2
PSO675G8062 Papaver somniferum HOM05D004441 ORTHO05D003109 3.1e-12 76.6 335 29.6
Potri.011G045700 Populus trichocarpa HOM05D004441 ORTHO05D003109 3.1e-12 76.6 327 31.5
TAR626G0020 Trochodendron aralioides HOM05D004441 ORTHO05D003109 3.1e-12 76.6 244 34.4
FAN11G1619 Fragaria x ananassa HOM05D004441 ORTHO05D003109 4.0e-12 76.3 303 32.7
Eucgr.D00694 Eucalyptus grandis HOM05D004441 ORTHO05D003109 5.2e-12 75.9 300 31.0
FAN16G1227 Fragaria x ananassa HOM05D004441 ORTHO05D003109 6.8e-12 75.5 304 32.9
TWI63G0258 Tripterygium wilfordii HOM05D004441 ORTHO05D003109 6.8e-12 75.5 303 31.4
SalBow8G3623 Salvia bowleyana HOM05D004441 ORTHO05D003109 8.9e-12 75.1 284 34.5
SalBow8G4382 Salvia bowleyana HOM05D004441 ORTHO05D003109 8.9e-12 75.1 284 34.5
FAN25G3261 Fragaria x ananassa HOM05D004441 ORTHO05D003109 3.4e-11 73.2 304 32.6
MBI18_g13205_MAGBIO Magnolia biondii HOM05D004441 ORTHO05D003109 3.4e-11 73.2 288 33.3
Manes.16G023200 Manihot esculenta HOM05D004441 ORTHO05D003109 3.4e-11 73.2 337 32.0
Lsat_1_v5_gn_7_20000 Lactuca sativa HOM05D004441 ORTHO05D003109 4.4e-11 72.8 281 33.5
Sabra11G0031800 Salix brachista HOM05D004441 ORTHO05D003109 4.4e-11 72.8 330 31.8
RcHm_v2.0_Chr5g0007441 Rosa chinensis HOM05D004441 ORTHO05D003109 7.5e-11 72.0 330 32.7
Cpa.g.sc27.93 Carica papaya HOM05D004441 ORTHO05D003109 1.3e-10 71.2 309 29.8
FvH4_3g04520 Fragaria vesca HOM05D004441 ORTHO05D003109 1.7e-10 70.9 305 31.5
Nitab4.5_0003018g0090 Nicotiana tabacum HOM05D009304 ORTHO05D003109 1.7e-10 70.9 314 30.3
Peaxi162Scf00007g00287 Petunia axillaris HOM05D009304 ORTHO05D003109 1.7e-10 70.9 246 35.0
Cfa000385 Carpinus fangiana HOM05D004441 ORTHO05D003109 2.9e-10 70.1 307 33.6
Haze_06542 Corylus avellana HOM05D004441 ORTHO05D003109 6.4e-10 68.9 320 30.6
Solyc02g078760.1 Solanum lycopersicum HOM05D004441 ORTHO05D003109 6.4e-10 68.9 278 30.6
Cc00_g11510 Coffea canephora HOM05D004441 ORTHO05D003109 8.3e-10 68.6 294 34.7
CsaV3_6G049880 Cucumis sativus L. HOM05D004441 ORTHO05D003109 1.4e-09 67.8 297 30.3
Lsat_1_v5_gn_4_55461 Lactuca sativa HOM05D004441 ORTHO05D003109 1.4e-09 67.8 286 31.1
MELO3C007307.2 Cucumis melo HOM05D004441 ORTHO05D003109 4.1e-09 66.2 291 31.6
PSO541G1557 Papaver somniferum HOM05D004441 ORTHO05D003109 4.1e-09 66.2 333 28.5
Peaxi162Scf00612g00043 Petunia axillaris HOM05D004441 ORTHO05D003109 4.1e-09 66.2 267 33.0
VMungo0251G1953 Vigna mungo HOM05D004441 ORTHO05D003109 5.4e-09 65.9 80 52.5
Cfa014564 Carpinus fangiana HOM05D010652 ORTHO05D003109 7.0e-09 65.5 279 30.5
Dinv39787 Davidia involucrata HOM05D004441 ORTHO05D003109 7.0e-09 65.5 268 29.9
Lj1A733T64 Lonicera japonica HOM05D009304 ORTHO05D003109 1.2e-08 64.7 304 31.6
PGR042G3342 Punica granatum HOM05D004441 ORTHO05D003109 2.1e-08 63.9 285 32.3
Sed0025630 Sechium edule HOM05D004441 ORTHO05D003109 2.1e-08 63.9 240 35.8
Sopen03g002610 Solanum pennellii HOM05D021131 ORTHO05D022971 2.1e-08 63.9 103 39.8
Sed0005410 Sechium edule HOM05D002331 ORTHO05D002624 2.7e-08 63.5 274 29.9
PGSC0003DMG400005055 Solanum tuberosum HOM05D021131 ORTHO05D022971 2.7e-08 63.5 103 40.8
PGSC0003DMG400022372 Solanum tuberosum HOM05D004441 ORTHO05D003109 3.5e-08 63.2 234 32.1
Nitab4.5_0008104g0020 Nicotiana tabacum HOM05D021131 ORTHO05D022971 4.6e-08 62.8 101 42.6
arahy.Tifrunner.gnm1.ann1.7X1CID Arachis hypogaea HOM05D010177 ORTHO05D003109 6.0e-08 62.4 330 30.3
Cc05_g06660 Coffea canephora HOM05D009304 ORTHO05D003109 6.0e-08 62.4 311 32.8
Potri.004G037100 Populus trichocarpa HOM05D004441 ORTHO05D003109 6.0e-08 62.4 339 30.4
CSS0013822 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 7.8e-08 62.0 286 31.8
Solyc03g006600.1 Solanum lycopersicum HOM05D021131 ORTHO05D022971 7.8e-08 62.0 99 40.4
Sopen02g023590 Solanum pennellii HOM05D004441 ORTHO05D003109 7.8e-08 62.0 235 31.9
Ciclev10015894m.g Citrus clementina HOM05D004441 ORTHO05D003109 1.0e-07 61.6 222 32.0
Nitab4.5_0001833g0010 Nicotiana tabacum HOM05D021131 ORTHO05D022971 1.0e-07 61.6 104 40.4
Oeu026007.1 Olea europaea HOM05D004441 ORTHO05D003109 1.0e-07 61.6 299 30.4
Sabra05G0071200 Salix brachista HOM05D010652 ORTHO05D003109 1.3e-07 61.2 276 31.2
Solyc07g054560.1 Solanum lycopersicum HOM05D009304 ORTHO05D003109 1.3e-07 61.2 307 29.6
Rhsim13G0175700 Rhododendron simsii HOM05D004441 ORTHO05D003109 1.7e-07 60.8 288 31.9
Aqoxy4G01294 Aquilegia oxysepala HOM05D004441 ORTHO05D003109 2.3e-07 60.5 253 34.4
Eucgr.A01789 Eucalyptus grandis HOM05D004441 ORTHO05D003109 2.3e-07 60.5 322 29.5
Sopen07g028460 Solanum pennellii HOM05D009304 ORTHO05D003109 3.0e-07 60.1 313 30.7
CSS0028025 Camellia sinensis var. sinensis HOM05D009304 ORTHO05D003109 3.9e-07 59.7 287 32.1
Thhalv10023654m.g Eutrema salsugineum HOM05D004441 ORTHO05D003109 3.9e-07 59.7 217 35.9
FAN21G2327 Fragaria x ananassa HOM05D004441 ORTHO05D003109 3.9e-07 59.7 301 29.9
Sp2g03290 Schrenkiella parvula HOM05D004441 ORTHO05D003109 3.9e-07 59.7 279 30.5
A03p66730 Brassica napus HOM05D004441 ORTHO05D003109 8.6e-07 58.5 272 29.4
BraA01t02809Z Brassica rapa HOM05D004441 ORTHO05D003109 8.6e-07 58.5 272 29.4
Carub.0002s0400 Capsella rubella HOM05D004441 ORTHO05D003109 8.6e-07 58.5 256 34.0
Nitab4.5_0002370g0010 Nicotiana tabacum HOM05D009304 ORTHO05D003109 8.6e-07 58.5 266 28.9
Oeu029188.1 Olea europaea HOM05D004441 ORTHO05D003109 1.1e-06 58.2 295 29.8
AT1G61170 Arabidopsis thaliana HOM05D004441 ORTHO05D003109 1.5e-06 57.8 262 32.8
DCAR_009737 Daucus carota HOM05D009304 ORTHO05D003109 1.9e-06 57.4 247 32.0
THA.LOC104809557 Tarenaya hassleriana HOM05D004441 ORTHO05D003109 1.9e-06 57.4 309 29.8
Psat5g270560 Pisum sativum HOM05D010177 ORTHO05D003109 2.5e-06 57.0 302 29.8
PGSC0003DMG400018324 Solanum tuberosum HOM05D009304 ORTHO05D003109 2.5e-06 57.0 313 30.4
Actinidia05598 Actinidia chinensis HOM05D004441 ORTHO05D003109 3.3e-06 56.6 237 31.6
AL2G15180 Arabidopsis lyrata HOM05D004441 ORTHO05D003109 3.3e-06 56.6 260 33.1
BcaB04g20321 Brassica carinata HOM05D004441 ORTHO05D003109 3.3e-06 56.6 273 29.3
BcaC02g10584 Brassica carinata HOM05D004441 ORTHO05D003109 4.3e-06 56.2 272 29.4
C04p27200 Brassica napus HOM05D004441 ORTHO05D003109 4.3e-06 56.2 272 29.4
BolC4t24251H Brassica oleracea HOM05D004441 ORTHO05D003109 4.3e-06 56.2 272 29.4
BraA01t03127Z Brassica rapa HOM05D004441 ORTHO05D003109 4.3e-06 56.2 278 29.5
Cpa.g.sc34.119 Carica papaya HOM05D004441 ORTHO05D003109 5.6e-06 55.8 303 29.7
QL08p037640 Quercus lobata HOM05D010652 ORTHO05D003109 5.6e-06 55.8 318 26.7
FvH4_6g44980 Fragaria vesca HOM05D010652 ORTHO05D003109 7.3e-06 55.5 333 27.6
Haze_13109 Corylus avellana HOM05D010652 ORTHO05D003109 9.5e-06 55.1 287 31.7


User provided reference genes

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