Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G222500 Phaseolus vulgaris HOM05D004656 ORTHO05D005404 0.0e+00 1493.4 778 100.0
VMungo0251G3002 Vigna mungo HOM05D004656 ORTHO05D005404 0.0e+00 1392.1 778 93.2
Glyma.07G190600 Glycine max HOM05D004656 ORTHO05D005404 0.0e+00 1354.0 778 88.4
Lj4g0008048 Lotus japonicus HOM05D004656 ORTHO05D005404 0.0e+00 1298.9 779 84.9
Medtr4g090990 Medicago truncatula HOM05D004656 ORTHO05D005404 0.0e+00 1290.0 778 83.3
Lalb_Chr05g0218181 Lupinus albus HOM05D004656 ORTHO05D005404 0.0e+00 1283.9 780 84.2
TPR.G32417 Trifolium pratense HOM05D004656 ORTHO05D005404 0.0e+00 1270.8 789 81.5
arahy.Tifrunner.gnm1.ann1.N579TE Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1243.0 778 80.3
Psat7g109640 Pisum sativum HOM05D004656 ORTHO05D005404 0.0e+00 1238.8 778 80.6
arahy.Tifrunner.gnm1.ann1.9GFP5H Arachis hypogaea HOM05D004656 ORTHO05D005404 0.0e+00 1233.0 803 78.0
QL03p053091 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1143.6 777 74.1
QL05p081970 Quercus lobata HOM05D004656 ORTHO05D005404 0.0e+00 1143.6 777 74.1
Potri.004G034900 Populus trichocarpa HOM05D004656 ORTHO05D005404 0.0e+00 1112.8 779 72.5
CiPaw.09G158300 Carya illinoinensis HOM05D004656 ORTHO05D005404 0.0e+00 1104.4 781 72.3
Atru.chr10.2003 Acer truncatum HOM05D004656 ORTHO05D005404 0.0e+00 1102.4 779 71.8
Thecc.06G198700 Theobroma cacao HOM05D004656 ORTHO05D005404 0.0e+00 1092.4 778 70.8
Dinv39815 Davidia involucrata HOM05D004656 ORTHO05D005404 0.0e+00 1087.0 778 70.1
Duzib160G0757 Durio zibethinus HOM05D004656 ORTHO05D005404 0.0e+00 1079.3 796 69.8
CANSAT56G3558 Cannabis sativa HOM05D004656 ORTHO05D005404 0.0e+00 1078.2 781 70.3
RcHm_v2.0_Chr5g0006531 Rosa chinensis HOM05D004656 ORTHO05D005404 0.0e+00 1078.2 784 71.6
MD10G1303000 Malus domestica HOM05D004656 ORTHO05D005404 0.0e+00 1076.6 779 71.0
GSVIVG01003206001 Vitis vinifera HOM05D004656 ORTHO05D005404 0.0e+00 1075.8 778 69.7
COL.COLO4_31575 Corchorus olitorius HOM05D004656 ORTHO05D005404 1.1e-311 1072.8 778 71.2
Gorai.011G022700 Gossypium raimondii HOM05D004656 ORTHO05D005404 1.5e-309 1065.8 779 69.7
Prupe.4G036500 Prunus persica HOM05D004656 ORTHO05D005404 2.0e-309 1065.4 783 70.6
Ciclev10014364m.g Citrus clementina HOM05D004656 ORTHO05D005404 9.9e-309 1063.1 778 70.1
FvH4_3g04050 Fragaria vesca HOM05D004656 ORTHO05D005404 1.1e-307 1059.7 779 69.6
Cpa.g.sc27.117 Carica papaya HOM05D004656 ORTHO05D005404 2.4e-307 1058.5 774 69.1
Gohir.A10G020800 Gossypium hirsutum HOM05D004656 ORTHO05D005404 2.4e-307 1058.5 778 69.5
Gohir.D10G021600 Gossypium hirsutum HOM05D004656 ORTHO05D005404 3.2e-307 1058.1 789 68.9
Cfa000358 Carpinus fangiana HOM05D004656 ORTHO05D005404 6.0e-306 1053.9 781 69.1
FAN11G0019 Fragaria x ananassa HOM05D004656 ORTHO05D005404 6.0e-306 1053.9 783 69.2
TWI38G2153 Tripterygium wilfordii HOM05D004656 ORTHO05D005404 3.6e-303 1044.6 776 68.7
Sabra04G0020600 Salix brachista HOM05D004656 ORTHO05D005404 2.6e-301 1038.5 750 70.7
Sed0019970 Sechium edule HOM05D004656 ORTHO05D005404 3.2e-299 1031.6 785 67.3
MELO3C025319.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.9e-296 1022.3 784 68.9
FAN16G1451 Fragaria x ananassa HOM05D004656 ORTHO05D005404 1.9e-296 1022.3 779 68.4
ClCG01G022700 Citrullus lanatus HOM05D004656 ORTHO05D005404 4.3e-296 1021.1 778 69.3
vmacro03819 Vaccinium macrocarpon HOM05D004656 ORTHO05D005404 1.1e-294 1016.5 869 62.0
CsaV3_1G030810 Cucumis sativus L. HOM05D004656 ORTHO05D005404 1.8e-294 1015.8 784 68.8
FAN25G3623 Fragaria x ananassa HOM05D004656 ORTHO05D005404 2.9e-292 1008.4 881 61.5
DCAR_004136 Daucus carota HOM05D004656 ORTHO05D005404 1.9e-291 1005.7 779 65.1
Solyc02g079050.3 Solanum lycopersicum HOM05D004656 ORTHO05D005404 1.2e-290 1003.0 778 64.9
Sopen02g023860 Solanum pennellii HOM05D004656 ORTHO05D005404 1.6e-290 1002.7 778 64.8
PSO063G3544 Papaver somniferum HOM05D004656 ORTHO05D005404 2.1e-290 1002.3 780 65.1
CSS0039613 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.0e-289 1000.0 778 66.1
Cc02_g12490 Coffea canephora HOM05D004656 ORTHO05D005404 1.3e-287 993.0 779 63.9
Nn2g12691 Nelumbo nucifera HOM05D004656 ORTHO05D005404 1.3e-287 993.0 778 66.2
Migut.E00415 Erythranthe guttata HOM05D004656 ORTHO05D005404 3.4e-285 984.9 779 62.9
CAN.G1181.24 Capsicum annuum HOM05D004656 ORTHO05D005404 1.3e-284 983.0 781 64.0
THA.LOC104812734 Tarenaya hassleriana HOM05D004656 ORTHO05D005404 5.0e-284 981.1 773 64.8
PSO782G2217 Papaver somniferum HOM05D004656 ORTHO05D005404 2.7e-282 975.3 780 64.2
SalBow7G0840 Salvia bowleyana HOM05D004656 ORTHO05D005404 4.6e-282 974.5 779 62.6
Aqoxy7G03085 Aquilegia oxysepala HOM05D004656 ORTHO05D005404 1.8e-281 972.6 780 65.5
SalBow7G0885 Salvia bowleyana HOM05D004656 ORTHO05D005404 1.8e-281 972.6 779 62.6
Carub.0007s1989 Capsella rubella HOM05D004656 ORTHO05D005404 3.0e-281 971.8 773 63.5
AT4G21530 Arabidopsis thaliana HOM05D004656 ORTHO05D005404 8.7e-281 970.3 780 63.7
HanXRQChr17g0551051 Helianthus annuus HOM05D004656 ORTHO05D005404 8.7e-281 970.3 782 63.7
Sc17g0006590 Simmondsia chinensis HOM05D004656 ORTHO05D005404 3.3e-280 968.4 780 62.6
Nitab4.5_0000190g0180 Nicotiana tabacum HOM05D004656 ORTHO05D005404 5.7e-280 967.6 838 60.7
AL7G32500 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 7.4e-280 967.2 776 63.9
Lsat_1_v5_gn_4_57080 Lactuca sativa HOM05D004656 ORTHO05D005404 7.4e-280 967.2 786 63.9
Nitab4.5_0003574g0090 Nicotiana tabacum HOM05D004656 ORTHO05D005404 1.3e-279 966.5 777 64.1
Thhalv10024471m.g Eutrema salsugineum HOM05D004656 ORTHO05D005404 2.2e-279 965.7 777 62.4
CARHR228190 Cardamine hirsuta HOM05D004656 ORTHO05D005404 5.9e-277 957.6 772 62.2
A01p12840 Brassica napus HOM05D004656 ORTHO05D005404 1.3e-276 956.4 776 62.1
BraA01t01228Z Brassica rapa HOM05D004656 ORTHO05D005404 1.3e-276 956.4 781 61.8
BolC1t01500H Brassica oleracea HOM05D004656 ORTHO05D005404 2.2e-276 955.7 776 62.2
C01p15460 Brassica napus HOM05D004656 ORTHO05D005404 8.5e-276 953.7 785 61.5
Peaxi162Scf00588g01013 Petunia axillaris HOM05D004656 ORTHO05D005404 5.5e-275 951.0 779 63.3
Manes.15G100000 Manihot esculenta HOM05D004656 ORTHO05D005404 9.4e-275 950.3 741 66.3
Aa31LG6G3550 Aethionema arabicum HOM05D004656 ORTHO05D005404 1.2e-274 949.9 779 62.1
PGR042G3654 Punica granatum HOM05D004656 ORTHO05D005404 1.4e-273 946.4 780 63.5
ECA234G0402 Erigeron canadensis HOM05D004656 ORTHO05D005404 7.4e-272 940.6 785 62.7
MBI16_g41806_MAGBIO Magnolia biondii HOM05D004656 ORTHO05D005404 6.9e-270 934.1 880 56.9
Sp7g19640 Schrenkiella parvula HOM05D004656 ORTHO05D005404 2.6e-269 932.2 777 60.9
BcaNung02789 Brassica carinata HOM05D004656 ORTHO05D005404 1.4e-267 926.4 802 59.7
AUR62016904 Chenopodium quinoa HOM05D004656 ORTHO05D005404 7.2e-267 924.1 777 59.6
Haze_06568 Corylus avellana HOM05D004656 ORTHO05D005404 7.9e-266 920.6 726 65.7
Ca_18486_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 8.8e-265 917.1 540 86.9
Oeu053939.3 Olea europaea HOM05D004656 ORTHO05D005404 1.3e-260 903.3 778 59.6
AUR62014723 Chenopodium quinoa HOM05D004656 ORTHO05D005404 2.2e-255 885.9 746 59.1
SGA_v2.0_scaffold92G28242 Striga asiatica HOM05D004656 ORTHO05D005404 1.0e-252 877.1 784 57.5
Lj2A281G21 Lonicera japonica HOM05D004656 ORTHO05D005404 3.0e-249 865.5 774 58.5
ATR0580G317 Amborella trichopoda HOM05D004656 ORTHO05D005404 1.1e-243 847.0 785 57.1
EL10Ac8g20612 Beta vulgaris HOM05D004656 ORTHO05D005404 1.5e-235 820.1 774 56.1
HPP92_015366 Vanilla planifolia HOM05D004656 ORTHO05D005404 7.3e-235 817.8 798 54.9
Zm00001eb192820 Zea mays HOM05D004656 ORTHO05D005404 9.2e-214 747.7 772 53.2
GSVIVG01003202001 Vitis vinifera HOM05D004656 ORTHO05D005404 1.3e-194 684.1 466 73.8
BcaNung02790 Brassica carinata HOM05D004656 ORTHO05D005404 1.3e-191 674.1 498 66.3
AL7G32520 Arabidopsis lyrata HOM05D004656 ORTHO05D005404 3.4e-176 622.9 597 57.1
CDE02G2476 Ceratophyllum demersum HOM05D004656 ORTHO05D005404 1.9e-174 617.1 785 45.9
TAR626G0166 Trochodendron aralioides HOM05D004656 ORTHO05D005404 1.5e-171 607.4 479 65.1
Eucgr.E03497 Eucalyptus grandis HOM05D004656 ORTHO05D005404 3.6e-165 586.3 435 66.7
unitig_8.g3352 Utricularia gibba HOM05D004656 ORTHO05D005404 1.4e-148 531.2 514 53.7
Pp3c19_17530 Physcomitrium patens HOM05D004656 ORTHO05D005404 2.3e-148 530.4 796 38.9
Eucgr.D02667 Eucalyptus grandis HOM05D004656 ORTHO05D005404 9.4e-142 508.4 404 64.6
Mapoly0038s0098 Marchantia polymorpha HOM05D004656 ORTHO05D005404 1.6e-136 491.1 791 37.7
Hma1.2p1_1241F.1_g269840 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 9.4e-134 481.9 508 53.7
arahy.Tifrunner.gnm1.ann1.QWV34J Arachis hypogaea HOM05D004656 ORTHO05D005404 4.7e-109 399.8 266 77.8
AagrBONN_evm.TU.Sc2ySwM_117.1500 Anthoceros agrestis HOM05D004656 ORTHO05D005404 5.2e-100 369.8 752 33.0
BcaC09g51339 Brassica carinata HOM05D004656 ORTHO05D005404 1.5e-99 368.2 449 47.4
CBR_g50890 Chara braunii HOM05D004656 ORTHO05D000048 4.4e-99 366.7 831 32.1
BcaC09g51334 Brassica carinata HOM05D004656 ORTHO05D005404 1.1e-94 352.1 444 46.6
Hund23621 Selenicereus undatus HOM05D004656 ORTHO05D005404 4.3e-94 350.1 379 50.4
Eucgr.E03552 Eucalyptus grandis HOM05D004656 ORTHO05D005404 5.6e-86 323.2 256 64.8
Ca_18485_v3 Cicer arietinum L. HOM05D004656 ORTHO05D005404 2.4e-84 317.8 190 77.4
BcaC09g51337 Brassica carinata HOM05D004656 ORTHO05D005404 9.0e-84 315.8 381 47.0
Eucgr.C00026 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.1e-76 292.4 182 76.9
SEGI_33901 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 3.1e-68 264.2 392 40.1
unitig_8.g3351 Utricularia gibba HOM05D004656 ORTHO05D005404 9.7e-54 216.1 229 48.5
QL02p031126 Quercus lobata HOM05D004656 ORTHO05D005404 1.1e-46 192.6 174 60.3
SMO119G0264 Selaginella moellendorffii HOM05D004656 ORTHO05D005404 8.2e-45 186.4 771 25.2
RcHm_v2.0_Chr5g0006431 Rosa chinensis HOM05D004656 ORTHO05D005404 1.4e-41 175.6 324 38.3
SHI02118 Sapria himalayana HOM05D004656 ORTHO05D005404 3.6e-40 171.0 187 47.1
SHI02121 Sapria himalayana HOM05D004656 ORTHO05D005404 9.7e-38 162.9 255 37.6
Os02g0785900 Oryza sativa ssp. japonica HOM05D004656 ORTHO05D005404 2.9e-34 151.4 112 79.5
SEGI_08767 Sequoiadendron giganteum HOM05D004656 ORTHO05D005404 8.0e-32 143.3 165 48.5
CSS0025603 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.3e-29 136.0 80 80.0
CSS0042439 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 4.8e-29 134.0 80 80.0
Hund23620 Selenicereus undatus HOM05D004656 ORTHO05D005404 1.8e-28 132.1 86 68.6
EL10Ac6g14063 Beta vulgaris HOM05D004656 ORTHO05D005404 5.3e-28 130.6 105 61.9
Zm00001eb125490 Zea mays HOM05D004656 ORTHO05D005404 5.3e-28 130.6 109 56.0
PRCOL_00000091 Prasinoderma coloniale HOM05D004656 ORTHO05D005404 5.9e-27 127.1 476 25.0
Zm00001eb384090 Zea mays HOM05D004656 ORTHO05D005404 7.7e-27 126.7 109 55.0
EL10Ac9g22460 Beta vulgaris HOM05D004656 ORTHO05D005404 2.9e-26 124.8 84 70.2
CSS0005991 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.9e-26 124.8 105 57.1
Eucgr.C00045 Eucalyptus grandis HOM05D004656 ORTHO05D005404 2.9e-26 124.8 79 75.9
CSS0038861 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 3.8e-26 124.4 80 75.0
Hma1.2p1_0144F.1_g064710 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 1.5e-25 122.5 61 91.8
CSS0002071 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 1.9e-25 122.1 83 71.1
SGA_v2.0_scaffold159G37668 Striga asiatica HOM05D004656 ORTHO05D005404 2.1e-24 118.6 153 43.8
Eucgr.E01958 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.7e-24 117.5 92 60.9
Haze_06207 Corylus avellana HOM05D004656 ORTHO05D005404 5.2e-23 114.0 61 85.2
Cre12.g556650 Chlamydomonas reinhardtii HOM05D004656 ORTHO05D005404 7.5e-22 110.2 507 23.1
Hma1.2p1_1241F.1_g269830 Hydrangea macrophylla HOM05D004656 ORTHO05D005404 9.1e-20 103.2 61 80.3
MELO3C008912.2 Cucumis melo HOM05D004656 ORTHO05D005404 1.2e-19 102.8 55 85.5
MCO05G135 Micromonas commoda HOM05D004656 ORTHO05D005404 5.0e-18 97.4 487 23.0
Zm00001eb374130 Zea mays HOM05D004656 ORTHO05D005404 3.2e-17 94.7 50 82.0
EL10Ac3g05965 Beta vulgaris HOM05D004656 ORTHO05D005404 5.5e-17 94.0 57 78.9
MELO3C032683.2 Cucumis melo HOM05D004656 ORTHO05D005404 8.0e-16 90.1 62 64.5
CSS0037848 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 1.4e-15 89.4 66 66.7
TAR369G0180 Trochodendron aralioides HOM05D004656 ORTHO05D005404 2.3e-15 88.6 48 81.2
CSS0033314 Camellia sinensis var. sinensis HOM05D003145 ORTHO05D003586 3.0e-15 88.2 55 76.4
SHI02114 Sapria himalayana HOM05D004656 ORTHO05D005404 3.0e-15 88.2 56 67.9
CSS0023832 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 7.5e-14 83.6 80 57.5
Zm00001eb266270 Zea mays HOM05D004656 ORTHO05D005404 2.2e-13 82.0 80 50.0
Eucgr.C00011 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.1e-12 79.7 55 67.3
Eucgr.E03557 Eucalyptus grandis HOM05D004656 ORTHO05D005404 4.1e-12 77.8 61 59.0
Eucgr.E03560 Eucalyptus grandis HOM05D004656 ORTHO05D005404 9.1e-12 76.6 66 56.1
Eucgr.L00388 Eucalyptus grandis HOM05D004656 ORTHO05D005404 1.7e-10 72.4 67 58.2
SHI02119 Sapria himalayana HOM05D004656 ORTHO05D005404 1.0e-07 63.2 46 65.2
Actinidia29288 Actinidia chinensis HOM05D004656 ORTHO05D005404 5.2e-07 60.8 31 87.1
CSS0036547 Camellia sinensis var. sinensis HOM05D004656 ORTHO05D005404 2.6e-06 58.5 80 43.8


User provided reference genes

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