Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G222400 Phaseolus vulgaris HOM05D003712 ORTHO05D004368 8.5e-41 169.9 83 100.0
Glyma.07G190500 Glycine max HOM05D003712 ORTHO05D004368 7.7e-26 120.2 84 71.4
TPR.G22155 Trifolium pratense HOM05D003712 ORTHO05D004368 3.5e-18 94.7 80 60.0
Medtr4g091020 Medicago truncatula HOM05D003712 ORTHO05D004368 4.5e-18 94.4 84 59.5
Medtr4g091010 Medicago truncatula HOM05D003712 ORTHO05D004368 2.2e-17 92.0 82 58.5
TPR.G32428 Trifolium pratense HOM05D003712 ORTHO05D004368 2.2e-17 92.0 82 58.5
Glyma.08G058700 Glycine max HOM05D003712 ORTHO05D004368 2.9e-17 91.7 85 56.5
TPR.G32437 Trifolium pratense HOM05D003712 ORTHO05D004368 2.9e-17 91.7 82 57.3
Lj4g0026887 Lotus japonicus HOM05D003712 ORTHO05D004368 5.0e-17 90.9 87 55.2
Lsat_1_v5_gn_4_56541 Lactuca sativa HOM05D003712 ORTHO05D004368 1.5e-13 79.3 53 62.3
arahy.Tifrunner.gnm1.ann1.UHMW3K Arachis hypogaea HOM05D003712 ORTHO05D004368 2.0e-13 79.0 83 51.8
SalBow7G0868 Salvia bowleyana HOM05D003712 ORTHO05D004368 2.0e-13 79.0 53 60.4
FvH4_6g24132 Fragaria vesca HOM05D003712 ORTHO05D004368 3.4e-13 78.2 64 53.1
HanXRQChr16g0517551 Helianthus annuus HOM05D003712 ORTHO05D004368 3.4e-13 78.2 92 44.6
SalBow7G4100 Salvia bowleyana HOM05D003712 ORTHO05D004368 3.4e-13 78.2 75 50.7
Medtr4g091000 Medicago truncatula HOM05D003712 ORTHO05D004368 4.4e-13 77.8 80 46.2
Prupe.1G064500 Prunus persica HOM05D003712 ORTHO05D004368 5.7e-13 77.4 51 58.8
RcHm_v2.0_Chr2g0161661 Rosa chinensis HOM05D003712 ORTHO05D004368 9.8e-13 76.6 51 58.8
RcHm_v2.0_Chr2g0161721 Rosa chinensis HOM05D003712 ORTHO05D004368 9.8e-13 76.6 51 58.8
ECA234G4130 Erigeron canadensis HOM05D003712 ORTHO05D004368 1.3e-12 76.3 87 42.5
Gorai.011G140900 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.3e-12 76.3 59 59.3
Migut.M00339 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.2e-12 75.5 89 42.7
Oeu032463.1 Olea europaea HOM05D003712 ORTHO05D004368 2.2e-12 75.5 49 59.2
Prupe.3G230700 Prunus persica HOM05D003712 ORTHO05D004368 2.2e-12 75.5 53 52.8
Migut.M00335 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.8e-12 75.1 89 41.6
Gohir.D10G127800 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.8e-12 75.1 59 57.6
FAN05G3297 Fragaria x ananassa HOM05D004871 ORTHO05D005755 4.8e-12 74.3 73 47.9
RcHm_v2.0_Chr5g0006151 Rosa chinensis HOM05D003712 ORTHO05D004368 4.8e-12 74.3 61 50.8
Gohir.A10G138900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 6.3e-12 73.9 50 60.0
Zm00001eb369810 Zea mays HOM05D003712 ORTHO05D004368 6.3e-12 73.9 54 59.3
FAN25G2638 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.3e-12 73.6 51 56.9
Os01g0783000 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 8.3e-12 73.6 53 56.6
Migut.H01521 Erythranthe guttata HOM05D003712 ORTHO05D004368 1.1e-11 73.2 80 47.5
Oeu032464.1 Olea europaea HOM05D003712 ORTHO05D004368 1.1e-11 73.2 49 57.1
TAR626G1156 Trochodendron aralioides HOM05D003712 ORTHO05D004368 1.4e-11 72.8 51 58.8
FvH4_3g03881 Fragaria vesca HOM05D003712 ORTHO05D004368 2.4e-11 72.0 91 39.6
FvH4_6g44841 Fragaria vesca HOM05D003712 ORTHO05D004368 2.4e-11 72.0 51 56.9
FAN16G1684 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.4e-11 72.0 92 39.1
Haze_06583 Corylus avellana HOM05D003712 ORTHO05D004368 3.1e-11 71.6 89 36.0
FAN14G3156 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.1e-11 71.6 51 52.9
FvH4_6g44501 Fragaria vesca HOM05D003712 ORTHO05D004368 4.1e-11 71.2 84 42.9
FAN02G1220 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.1e-11 71.2 85 43.5
FAN14G5484 Fragaria x ananassa HOM05D003712 ORTHO05D004368 4.1e-11 71.2 84 42.9
Gorai.011G141000 Gossypium raimondii HOM05D003712 ORTHO05D004368 4.1e-11 71.2 95 40.0
Manes.12G082800 Manihot esculenta HOM05D003712 ORTHO05D004368 4.1e-11 71.2 86 43.0
Ciclev10017864m.g Citrus clementina HOM05D003712 ORTHO05D004368 5.4e-11 70.9 85 41.2
COL.COLO4_06989 Corchorus olitorius HOM05D003712 ORTHO05D004368 5.4e-11 70.9 81 46.9
Gohir.D10G127900 Gossypium hirsutum HOM05D003712 ORTHO05D004368 5.4e-11 70.9 92 41.3
MBI18_g37562_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.4e-11 70.9 52 53.8
MD17G1084800 Malus domestica HOM05D003712 ORTHO05D004368 5.4e-11 70.9 88 38.6
DCAR_004147 Daucus carota HOM05D003712 ORTHO05D004368 7.0e-11 70.5 56 51.8
Gohir.A10G139000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 7.0e-11 70.5 92 40.2
Prupe.3G230400 Prunus persica HOM05D003712 ORTHO05D004368 7.0e-11 70.5 49 59.2
Prupe.3G230600 Prunus persica HOM05D003712 ORTHO05D004368 7.0e-11 70.5 49 59.2
Potri.007G117900 Populus trichocarpa HOM05D003712 ORTHO05D004368 9.1e-11 70.1 89 43.8
DCAR_008077 Daucus carota HOM05D003712 ORTHO05D004368 1.2e-10 69.7 63 52.4
Manes.13G034200 Manihot esculenta HOM05D003712 ORTHO05D004368 1.2e-10 69.7 82 43.9
Cfa014527 Carpinus fangiana HOM05D003712 ORTHO05D004368 1.6e-10 69.3 89 38.2
Ciclev10003665m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.6e-10 69.3 84 41.7
Ciclev10033348m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.6e-10 69.3 84 44.0
FAN14G2952 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-10 69.3 82 43.9
FAN14G3502 Fragaria x ananassa HOM05D003712 ORTHO05D004368 1.6e-10 69.3 82 43.9
Lsat_1_v5_gn_4_56561 Lactuca sativa HOM05D003712 ORTHO05D004368 1.6e-10 69.3 76 46.1
Lsat_1_v5_gn_4_56721 Lactuca sativa HOM05D003712 ORTHO05D004368 1.6e-10 69.3 76 46.1
Lj4g0012776 Lotus japonicus HOM05D003712 ORTHO05D004368 1.6e-10 69.3 83 44.6
QL01p014092 Quercus lobata HOM05D003712 ORTHO05D004368 1.6e-10 69.3 52 51.9
DCAR_004145 Daucus carota HOM05D003712 ORTHO05D004368 2.0e-10 68.9 49 59.2
Gohir.A06G127300 Gossypium hirsutum HOM05D003712 ORTHO05D004368 2.0e-10 68.9 79 39.2
Lsat_1_v5_gn_4_56681 Lactuca sativa HOM05D003712 ORTHO05D004368 2.0e-10 68.9 76 46.1
MBI19_g03250_MAGBIO Magnolia biondii HOM05D000165 ORTHO05D008234 2.0e-10 68.9 49 55.1
Dinv13825 Davidia involucrata HOM05D003712 ORTHO05D004368 2.7e-10 68.6 49 51.0
FAN02G2973 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.7e-10 68.6 50 52.0
FAN09G2580 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.7e-10 68.6 50 52.0
FAN16G2577 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.7e-10 68.6 51 47.1
FAN21G1388 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.7e-10 68.6 92 33.7
FvH4_3g03882 Fragaria vesca HOM05D003712 ORTHO05D004368 3.5e-10 68.2 97 35.1
FAN14G4046 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.5e-10 68.2 50 52.0
Nitab4.5_0001871g0120 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.5e-10 68.2 53 47.2
Sed0020030 Sechium edule HOM05D003712 ORTHO05D004368 3.5e-10 68.2 79 41.8
CANSAT56G2493 Cannabis sativa HOM05D003712 ORTHO05D004368 4.5e-10 67.8 51 49.0
Prupe.4G037900 Prunus persica HOM05D003712 ORTHO05D004368 4.5e-10 67.8 61 47.5
Actinidia24056 Actinidia chinensis HOM05D003712 ORTHO05D004368 5.9e-10 67.4 86 39.5
Aqoxy4G02044 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 5.9e-10 67.4 88 43.2
HanXRQChr16g0517561 Helianthus annuus HOM05D003712 ORTHO05D004368 5.9e-10 67.4 86 44.2
Lsat_1_v5_gn_4_56621 Lactuca sativa HOM05D003712 ORTHO05D004368 5.9e-10 67.4 76 44.7
Prupe.3G230900 Prunus persica HOM05D003712 ORTHO05D004368 5.9e-10 67.4 49 59.2
CiPaw.07G040700 Carya illinoinensis HOM05D003712 ORTHO05D004368 7.7e-10 67.0 85 35.3
Eucgr.E03691 Eucalyptus grandis HOM05D003712 ORTHO05D004368 7.7e-10 67.0 52 46.2
FAN08G3545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 7.7e-10 67.0 49 49.0
MBI06_g08453_MAGBIO Magnolia biondii HOM05D003712 ORTHO05D004368 7.7e-10 67.0 52 51.9
Nitab4.5_0008774g0010 Nicotiana tabacum HOM05D003712 ORTHO05D004368 7.7e-10 67.0 51 51.0
Potri.005G224300 Populus trichocarpa HOM05D003712 ORTHO05D004368 7.7e-10 67.0 89 38.2
Potri.007G106900 Populus trichocarpa HOM05D003712 ORTHO05D004368 7.7e-10 67.0 89 40.4
Prupe.3G230500 Prunus persica HOM05D003712 ORTHO05D004368 7.7e-10 67.0 89 39.3
TAR626G0105 Trochodendron aralioides HOM05D003712 ORTHO05D004368 7.7e-10 67.0 51 54.9
ATR0693G124 Amborella trichopoda HOM05D003712 ORTHO05D004368 1.0e-09 66.6 96 33.3
ClCG00G003860 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.0e-09 66.6 94 39.4
ClCG01G022520 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.0e-09 66.6 94 39.4
Gohir.D06G128000 Gossypium hirsutum HOM05D003712 ORTHO05D004368 1.0e-09 66.6 87 35.6
Gorai.010G149700 Gossypium raimondii HOM05D003712 ORTHO05D004368 1.0e-09 66.6 87 35.6
Potri.005G061780 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.0e-09 66.6 82 41.5
RcHm_v2.0_Chr5g0071201 Rosa chinensis HOM05D003712 ORTHO05D004368 1.0e-09 66.6 50 52.0
Aqoxy4G02045 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.3e-09 66.2 50 52.0
Aqoxy5G01667 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.3e-09 66.2 75 41.3
Hma1.2p1_0565F.1_g179590 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 1.3e-09 66.2 88 38.6
Lsat_1_v5_gn_4_56741 Lactuca sativa HOM05D003712 ORTHO05D004368 1.3e-09 66.2 78 43.6
Nitab4.5_0005389g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.3e-09 66.2 59 49.2
Aqoxy4G02036 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 1.7e-09 65.9 81 45.7
Ciclev10003398m.g Citrus clementina HOM05D003712 ORTHO05D004368 1.7e-09 65.9 83 37.3
COL.COLO4_31595 Corchorus olitorius HOM05D003712 ORTHO05D004368 1.7e-09 65.9 53 49.1
CsaV3_6G049690 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.7e-09 65.9 90 42.2
DCAR_004148 Daucus carota HOM05D003712 ORTHO05D004368 1.7e-09 65.9 50 48.0
Aqoxy5G01666 Aquilegia oxysepala HOM05D003712 ORTHO05D004368 2.2e-09 65.5 87 36.8
DCAR_012976 Daucus carota HOM05D003712 ORTHO05D004368 2.2e-09 65.5 53 43.4
FAN11G0545 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.2e-09 65.5 51 43.1
FAN25G1764 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.2e-09 65.5 58 43.1
Hma1.2p1_0565F.1_g179580 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 2.2e-09 65.5 91 37.4
Actinidia09903 Actinidia chinensis HOM05D003712 ORTHO05D004368 2.9e-09 65.1 51 45.1
Migut.M00336 Erythranthe guttata HOM05D003712 ORTHO05D004368 2.9e-09 65.1 86 37.2
DCAR_004146 Daucus carota HOM05D003712 ORTHO05D004368 3.8e-09 64.7 63 49.2
DCAR_008079 Daucus carota HOM05D003712 ORTHO05D004368 3.8e-09 64.7 89 38.2
DCAR_008081 Daucus carota HOM05D003712 ORTHO05D004368 3.8e-09 64.7 89 38.2
FvH4_6g44545 Fragaria vesca HOM05D003712 ORTHO05D004368 3.8e-09 64.7 50 52.0
Sed0026588 Sechium edule HOM05D003712 ORTHO05D004368 3.8e-09 64.7 93 37.6
DCAR_024926 Daucus carota HOM05D003712 ORTHO05D004368 5.0e-09 64.3 89 39.3
Nitab4.5_0001871g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.0e-09 64.3 82 34.1
Nitab4.5_0002956g0080 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.0e-09 64.3 82 34.1
Nitab4.5_0008654g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.0e-09 64.3 84 35.7
Peaxi162Scf00779g00008 Petunia axillaris HOM05D003712 ORTHO05D004368 5.0e-09 64.3 87 42.5
RcHm_v2.0_Chr5g0006161 Rosa chinensis HOM05D003712 ORTHO05D004368 5.0e-09 64.3 59 39.0
Lsat_1_v5_gn_4_69400 Lactuca sativa HOM05D003712 ORTHO05D004368 6.5e-09 63.9 85 37.6
FvH4_3g39481 Fragaria vesca HOM05D003712 ORTHO05D004368 8.5e-09 63.5 46 52.2
FAN11G3078 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.5e-09 63.5 46 52.2
FAN16G2504 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.5e-09 63.5 50 50.0
FAN18G4187 Fragaria x ananassa HOM05D003712 ORTHO05D004368 8.5e-09 63.5 93 34.4
PGSC0003DMG400042227 Solanum tuberosum HOM05D003712 ORTHO05D004368 8.5e-09 63.5 72 41.7
Cpa.g.sc228.6 Carica papaya HOM05D003712 ORTHO05D004368 1.1e-08 63.2 92 37.0
CsaV3_6G049680 Cucumis sativus L. HOM05D003712 ORTHO05D004368 1.1e-08 63.2 89 37.1
Nitab4.5_0002956g0060 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.1e-08 63.2 81 35.8
Potri.007G109600 Populus trichocarpa HOM05D003712 ORTHO05D004368 1.1e-08 63.2 88 39.8
RcHm_v2.0_Chr7g0234891 Rosa chinensis HOM05D003712 ORTHO05D004368 1.1e-08 63.2 79 38.0
CiPaw.10G118000 Carya illinoinensis HOM05D003712 ORTHO05D004368 1.5e-08 62.8 88 35.2
FvH4_5g34303 Fragaria vesca HOM05D003712 ORTHO05D004368 1.5e-08 62.8 93 34.4
MD09G1090300 Malus domestica HOM05D003712 ORTHO05D004368 1.5e-08 62.8 58 46.6
Nitab4.5_0005244g0050 Nicotiana tabacum HOM05D003712 ORTHO05D004368 1.5e-08 62.8 78 41.0
Oeu006542.1 Olea europaea HOM05D003712 ORTHO05D004368 1.5e-08 62.8 81 35.8
Peaxi162Scf00485g00072 Petunia axillaris HOM05D003712 ORTHO05D004368 1.5e-08 62.8 80 45.0
ClCG00G003850 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.9e-08 62.4 48 50.0
ClCG01G022510 Citrullus lanatus HOM05D003712 ORTHO05D004368 1.9e-08 62.4 48 50.0
ECA236G2370 Erigeron canadensis HOM05D003712 ORTHO05D004368 1.9e-08 62.4 52 50.0
Solyc07g054700.3 Solanum lycopersicum HOM05D003712 ORTHO05D004368 1.9e-08 62.4 83 36.1
Eucgr.I00207 Eucalyptus grandis HOM05D003712 ORTHO05D004368 2.5e-08 62.0 93 34.4
Os01g0782901 Oryza sativa ssp. japonica HOM05D003712 ORTHO05D004368 2.5e-08 62.0 54 53.7
Haze_13069 Corylus avellana HOM05D003712 ORTHO05D004368 3.2e-08 61.6 88 36.4
Nitab4.5_0002791g0030 Nicotiana tabacum HOM05D003712 ORTHO05D004368 3.2e-08 61.6 81 34.6
Thecc.06G200700 Theobroma cacao HOM05D003712 ORTHO05D004368 4.2e-08 61.2 86 33.7
FvH4_6g44490 Fragaria vesca HOM05D003712 ORTHO05D004368 5.5e-08 60.8 43 55.8
Nitab4.5_0014858g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 5.5e-08 60.8 81 34.6
Potri.002G038350 Populus trichocarpa HOM05D003712 ORTHO05D004368 5.5e-08 60.8 60 43.3
Hma1.2p1_0565F.1_g179610 Hydrangea macrophylla HOM05D003712 ORTHO05D004368 7.2e-08 60.5 93 36.6
Nitab4.5_0000649g0020 Nicotiana tabacum HOM05D003712 ORTHO05D004368 7.2e-08 60.5 79 41.8
Peaxi162Scf00779g00018 Petunia axillaris HOM05D003712 ORTHO05D004368 7.2e-08 60.5 83 41.0
PGSC0003DMG401022401 Solanum tuberosum HOM05D003712 ORTHO05D004368 7.2e-08 60.5 83 38.6
Actinidia11811 Actinidia chinensis HOM05D003712 ORTHO05D004368 9.4e-08 60.1 49 49.0
FvH4_3g39491 Fragaria vesca HOM05D003712 ORTHO05D004368 9.4e-08 60.1 86 37.2
HanXRQChr15g0488611 Helianthus annuus HOM05D003712 ORTHO05D004368 9.4e-08 60.1 89 34.8
HanXRQChr15g0488621 Helianthus annuus HOM05D003712 ORTHO05D004368 9.4e-08 60.1 89 34.8
TWI18G1344 Tripterygium wilfordii HOM05D003712 ORTHO05D004368 9.4e-08 60.1 49 49.0
FAN21G1030 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.1e-07 58.9 86 37.2
FAN25G3769 Fragaria x ananassa HOM05D003712 ORTHO05D004368 2.1e-07 58.9 86 37.2
SalBow8G4951 Salvia bowleyana HOM05D003712 ORTHO05D004368 2.1e-07 58.9 73 39.7
FvH4_5g34304 Fragaria vesca HOM05D003712 ORTHO05D004368 2.7e-07 58.5 50 52.0
RcHm_v2.0_Chr2g0161751 Rosa chinensis HOM05D003712 ORTHO05D004368 2.7e-07 58.5 50 42.0
DCAR_028776 Daucus carota HOM05D003712 ORTHO05D004368 3.6e-07 58.2 86 32.6
HanXRQChr05g0131191 Helianthus annuus HOM05D003712 ORTHO05D004368 3.6e-07 58.2 81 33.3
Oeu006541.1 Olea europaea HOM05D003712 ORTHO05D004368 4.7e-07 57.8 81 34.6
Peaxi162Scf00089g01522 Petunia axillaris HOM05D003712 ORTHO05D004368 4.7e-07 57.8 78 41.0
Solyc07g054710.2 Solanum lycopersicum HOM05D003712 ORTHO05D004368 4.7e-07 57.8 84 34.5
FvH4_5g02870 Fragaria vesca HOM05D003712 ORTHO05D004368 3.0e-06 55.1 92 37.0
FAN18G0797 Fragaria x ananassa HOM05D003712 ORTHO05D004368 3.0e-06 55.1 86 38.4
MBI18_g37563_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.2e-06 54.3 41 48.8


User provided reference genes

Program Settings