Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 2.9e-251 871.3 415 100.0
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 1.2e-231 806.2 420 92.6
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 7.1e-221 770.4 408 89.2
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 2.1e-204 715.7 415 81.7
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 2.3e-203 712.2 415 80.5
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 3.7e-201 704.9 441 78.0
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 6.0e-196 687.6 414 79.7
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 1.3e-195 686.4 399 82.5
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 1.1e-194 683.3 400 80.2
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 2.1e-193 679.1 385 82.6
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 3.7e-177 625.2 418 71.8
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 4.8e-177 624.8 392 75.0
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 6.3e-177 624.4 401 73.1
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 1.1e-176 623.6 413 72.6
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 5.3e-176 621.3 400 73.2
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 1.5e-175 619.8 407 70.8
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 2.6e-175 619.0 404 72.3
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 4.5e-175 618.2 397 72.3
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 5.9e-175 617.8 416 70.9
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 1.7e-174 616.3 401 71.8
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 4.2e-173 611.7 388 73.2
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 7.2e-173 610.9 378 74.6
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 1.6e-172 609.8 405 72.1
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 1.0e-171 607.1 388 73.5
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 1.4e-171 606.7 398 71.6
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 2.3e-171 605.9 399 73.2
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 5.1e-171 604.7 403 70.5
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 6.7e-171 604.4 399 72.9
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 3.3e-170 602.1 400 72.2
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 4.4e-170 601.7 405 70.4
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 7.4e-170 600.9 396 69.7
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 9.7e-170 600.5 406 70.7
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 3.7e-169 598.6 401 70.3
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 4.8e-169 598.2 402 71.9
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 1.8e-168 596.3 390 71.8
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 7.0e-168 594.3 389 70.7
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 9.1e-168 594.0 405 70.6
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 2.2e-166 589.3 410 69.3
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 3.8e-166 588.6 423 66.7
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 5.0e-166 588.2 417 69.8
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 9.4e-165 583.9 413 67.3
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 1.2e-164 583.6 393 68.7
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 1.2e-164 583.6 403 67.7
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 2.7e-164 582.4 397 69.0
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 8.0e-164 580.9 402 69.2
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 1.0e-163 580.5 397 68.5
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 1.8e-163 579.7 417 67.4
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 6.7e-163 577.8 415 67.2
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 8.8e-163 577.4 384 72.9
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 1.5e-162 576.6 414 67.4
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 2.6e-162 575.9 397 69.5
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 3.3e-162 575.5 405 66.9
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 3.3e-162 575.5 389 70.7
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.4e-162 575.1 396 68.9
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 7.5e-162 574.3 428 65.7
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 9.7e-162 573.9 395 68.1
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 1.7e-161 573.2 398 67.8
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 1.7e-161 573.2 383 69.7
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 2.8e-161 572.4 413 66.1
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 2.8e-161 572.4 420 67.9
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 4.8e-161 571.6 416 64.7
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 8.2e-161 570.9 388 70.1
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 1.1e-160 570.5 413 65.9
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 1.1e-160 570.5 413 65.9
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 1.4e-160 570.1 393 69.5
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 1.8e-160 569.7 413 66.3
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 1.8e-160 569.7 413 66.3
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 1.2e-159 567.0 428 64.7
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 1.2e-159 567.0 384 70.3
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 1.6e-159 566.6 356 76.1
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 2.0e-159 566.2 415 66.3
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 3.5e-159 565.5 409 66.0
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 4.5e-159 565.1 384 68.5
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 4.5e-159 565.1 378 70.6
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 1.3e-158 563.5 416 65.9
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 1.1e-157 560.5 378 70.1
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 1.9e-157 559.7 403 68.0
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 1.9e-157 559.7 389 69.2
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 1.9e-157 559.7 399 65.4
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 2.7e-156 555.8 377 70.8
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 6.1e-156 554.7 447 63.1
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 4.4e-154 548.5 414 65.9
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 5.5e-149 531.6 370 68.4
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 4.7e-148 528.5 379 66.5
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 1.1e-144 517.3 412 61.2
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 2.0e-143 513.1 416 61.1
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 4.0e-139 498.8 398 62.6
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 2.6e-138 496.1 295 80.3
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 1.8e-136 490.0 395 58.7
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 4.1e-136 488.8 419 60.1
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 2.5e-133 479.6 374 61.8
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 2.8e-132 476.1 399 55.1
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 1.0e-131 474.2 370 60.3
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 4.0e-131 472.2 358 62.8
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 4.0e-123 445.7 322 65.8
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 2.9e-121 439.5 313 66.5
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 1.9e-120 436.8 355 58.3
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 3.9e-118 429.1 382 57.1
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 5.2e-115 418.7 285 71.9
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 5.4e-112 408.7 390 55.1
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 1.5e-106 390.6 363 51.2
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 2.6e-106 389.8 371 49.6
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 3.4e-90 336.3 179 87.2
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 4.5e-90 335.9 224 70.5
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 1.0e-86 324.7 278 55.8
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 5.6e-85 318.9 245 64.1
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 7.9e-79 298.5 409 40.8
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 8.7e-78 295.0 448 41.1
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.3e-76 291.2 171 77.2
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.3e-76 291.2 171 77.2
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 5.3e-75 285.8 389 39.1
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 1.0e-73 281.6 291 50.5
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 9.4e-64 248.4 146 77.4
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 2.9e-49 200.3 127 76.4
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 6.5e-49 199.1 136 64.7
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 4.7e-47 193.0 192 54.2
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 5.7e-45 186.0 103 79.6
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 2.9e-41 173.7 298 34.6
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 2.1e-39 167.5 123 63.4
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 3.0e-38 163.7 89 83.1
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.0e-38 163.7 115 67.8
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 9.8e-37 158.7 101 71.3
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.6e-34 151.4 103 69.9
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 2.1e-31 141.0 106 57.5
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 3.5e-26 123.6 80 65.0
HPP92_018063 Vanilla planifolia HOM05D006195 ORTHO05D007710 9.8e-21 105.5 143 44.1
SHI02124 Sapria himalayana HOM05D006195 ORTHO05D007710 4.9e-20 103.2 225 36.0
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 4.7e-15 86.7 110 43.6
Pp3c2_19830 Physcomitrium patens HOM05D002999 ORTHO05D003137 1.2e-10 72.0 252 26.6
Nitab4.5_0004238g0040 Nicotiana tabacum HOM05D002999 ORTHO05D003137 4.6e-10 70.1 224 26.3
AUR62043984 Chenopodium quinoa HOM05D002999 ORTHO05D003137 1.0e-09 68.9 219 26.9
AagrBONN_evm.TU.Sc2ySwM_228.3731 Anthoceros agrestis HOM05D002999 ORTHO05D003137 1.7e-09 68.2 235 25.1
Pp3c10_3720 Physcomitrium patens HOM05D002999 ORTHO05D003137 8.6e-09 65.9 256 24.6
Os03g0669200 Oryza sativa ssp. japonica HOM05D003825 ORTHO05D004491 4.3e-08 63.5 297 19.9
Zm00001eb052290 Zea mays HOM05D003825 ORTHO05D004491 5.6e-08 63.2 296 18.9
Nn5g29575 Nelumbo nucifera HOM05D003825 ORTHO05D004491 7.3e-08 62.8 301 19.9
Pp3c1_22090 Physcomitrium patens HOM05D002999 ORTHO05D003137 9.5e-08 62.4 252 25.0
TAR376G0761 Trochodendron aralioides HOM05D003825 ORTHO05D004491 9.5e-08 62.4 253 21.3
Sc19g0004770 Simmondsia chinensis HOM05D002999 ORTHO05D003137 1.6e-07 61.6 264 24.6
AagrBONN_evm.TU.Sc2ySwM_362.297 Anthoceros agrestis HOM05D002999 ORTHO05D003137 2.1e-07 61.2 251 25.9
PSO675G6008 Papaver somniferum HOM05D003825 ORTHO05D004491 2.8e-07 60.8 254 21.3
Aqoxy6G01089 Aquilegia oxysepala HOM05D003825 ORTHO05D004491 3.6e-07 60.5 213 21.6
Oeu046787.1 Olea europaea HOM05D001229 ORTHO05D001374 8.1e-07 59.3 316 23.4
Oeu046788.1 Olea europaea HOM05D001229 ORTHO05D001374 8.1e-07 59.3 316 23.4
Ciclev10019830m.g Citrus clementina HOM05D002999 ORTHO05D003137 1.1e-06 58.9 276 23.6
Migut.M00121 Erythranthe guttata HOM05D001610 ORTHO05D001585 1.1e-06 58.9 249 25.3
C03p85750 Brassica napus HOM05D003825 ORTHO05D004491 1.4e-06 58.5 289 20.1
BolC3t20866H Brassica oleracea HOM05D003825 ORTHO05D004491 1.4e-06 58.5 289 20.1
Sabra04G0102100 Salix brachista HOM05D003825 ORTHO05D004491 1.4e-06 58.5 299 19.4
SalBow2G3192 Salvia bowleyana HOM05D002999 ORTHO05D003137 1.8e-06 58.2 371 20.8
A08p16790 Brassica napus HOM05D003825 ORTHO05D004491 2.3e-06 57.8 289 20.1
CSS0013325 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 4.0e-06 57.0 73 43.8
AUR62011330 Chenopodium quinoa HOM05D003825 ORTHO05D004491 4.0e-06 57.0 223 20.2
AUR62016731 Chenopodium quinoa HOM05D003825 ORTHO05D004491 4.0e-06 57.0 223 20.2
Sabra14G0102500 Salix brachista HOM05D002999 ORTHO05D003137 4.0e-06 57.0 150 29.3
A03p62930 Brassica napus HOM05D003825 ORTHO05D004491 5.2e-06 56.6 289 20.8
DCAR_001583 Daucus carota HOM05D003825 ORTHO05D004491 5.2e-06 56.6 255 19.2
HPP92_013924 Vanilla planifolia HOM05D003825 ORTHO05D004491 5.2e-06 56.6 219 21.5
Pp3c2_10200 Physcomitrium patens HOM05D000526 ORTHO05D000956 6.8e-06 56.2 158 29.1
SalBow2G2809 Salvia bowleyana HOM05D002999 ORTHO05D003137 6.8e-06 56.2 165 30.9
HPP92_014010 Vanilla planifolia HOM05D003825 ORTHO05D004491 6.8e-06 56.2 219 21.0
DCAR_018378 Daucus carota HOM05D002999 ORTHO05D003137 8.9e-06 55.8 270 23.0
Lsat_1_v5_gn_7_89161 Lactuca sativa HOM05D003825 ORTHO05D004491 8.9e-06 55.8 295 19.3


User provided reference genes

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