Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 5.0e-97 357.8 188 100.0
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 1.2e-87 326.6 188 91.0
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 1.5e-85 319.7 196 85.7
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 7.4e-85 317.4 196 86.2
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 1.0e-73 280.4 196 75.0
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 8.5e-73 277.3 195 74.9
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 1.5e-72 276.6 196 75.5
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 5.5e-72 274.6 198 74.7
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 1.2e-71 273.5 198 73.7
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 2.1e-71 272.7 198 74.2
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 1.4e-70 270.0 197 71.6
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 1.8e-70 269.6 174 78.7
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 2.3e-70 269.2 193 73.6
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 3.0e-70 268.9 194 75.3
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 8.8e-70 267.3 166 81.3
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 1.2e-69 266.9 174 78.7
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 2.6e-69 265.8 172 77.9
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 2.6e-69 265.8 174 77.6
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 4.4e-69 265.0 169 78.7
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 7.5e-69 264.2 175 76.0
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 7.5e-69 264.2 172 77.3
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.3e-68 263.5 193 72.5
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 1.7e-68 263.1 169 78.1
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 1.7e-68 263.1 175 75.4
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 1.7e-68 263.1 177 74.0
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 2.2e-68 262.7 169 78.7
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.8e-68 262.3 193 73.1
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 4.8e-68 261.5 172 76.7
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 6.3e-68 261.2 198 69.2
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 8.3e-68 260.8 174 76.4
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 8.3e-68 260.8 174 76.4
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 8.3e-68 260.8 170 76.5
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 1.1e-67 260.4 174 76.4
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 1.1e-67 260.4 174 76.4
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 1.1e-67 260.4 187 71.1
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.4e-67 260.0 172 76.2
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 1.4e-67 260.0 199 69.3
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 2.4e-67 259.2 171 77.2
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 3.1e-67 258.8 193 70.5
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 1.2e-66 256.9 192 71.9
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 1.6e-66 256.5 196 69.4
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 1.6e-66 256.5 181 73.5
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 1.6e-66 256.5 181 73.5
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 2.0e-66 256.1 171 78.4
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.7e-66 255.8 200 68.5
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 2.7e-66 255.8 197 67.0
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 2.7e-66 255.8 177 76.8
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.5e-66 255.4 200 68.5
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 3.5e-66 255.4 168 75.6
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 3.5e-66 255.4 174 74.7
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 4.5e-66 255.0 171 73.7
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 4.5e-66 255.0 190 71.1
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 5.9e-66 254.6 172 76.2
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 7.7e-66 254.2 193 69.9
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 1.3e-65 253.4 199 68.8
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 2.3e-65 252.7 179 73.7
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 3.8e-65 251.9 195 70.3
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 5.0e-65 251.5 193 66.8
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 5.0e-65 251.5 172 74.4
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 1.1e-64 250.4 174 74.1
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 1.1e-64 250.4 174 72.4
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 1.5e-64 250.0 155 78.1
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 4.2e-64 248.4 171 72.5
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 9.5e-64 247.3 155 78.1
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 9.5e-64 247.3 179 71.5
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 1.2e-63 246.9 167 73.7
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 2.1e-63 246.1 171 73.1
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.8e-63 245.7 171 73.1
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 3.6e-63 245.4 171 73.1
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 1.8e-62 243.0 174 73.0
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.8e-62 243.0 157 75.2
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 1.8e-62 243.0 157 75.2
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 2.3e-62 242.7 172 72.1
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 3.0e-62 242.3 178 69.7
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 8.8e-62 240.7 150 78.7
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.2e-61 240.4 185 67.0
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 2.0e-61 239.6 171 69.0
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 3.4e-61 238.8 186 67.7
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 4.4e-61 238.4 171 69.0
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 4.4e-61 238.4 171 69.0
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 4.4e-61 238.4 194 64.9
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 5.7e-61 238.0 200 68.0
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 9.8e-61 237.3 196 64.8
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.3e-60 236.9 181 66.3
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 1.3e-60 236.9 171 69.6
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 1.7e-60 236.5 196 63.8
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 2.2e-60 236.1 173 65.3
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 3.7e-60 235.3 200 61.0
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 3.7e-60 235.3 173 68.2
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 4.9e-60 235.0 185 60.5
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.1e-59 233.8 171 71.9
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 3.1e-59 232.3 174 68.4
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 4.1e-59 231.9 201 62.2
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 5.4e-59 231.5 173 69.4
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 9.2e-59 230.7 209 59.3
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 9.2e-59 230.7 174 67.8
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 1.2e-58 230.3 173 69.4
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.2e-58 230.3 176 65.9
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.6e-58 229.9 177 67.2
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 2.0e-58 229.6 174 67.8
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 3.5e-58 228.8 171 64.9
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 4.5e-58 228.4 177 67.8
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 7.8e-58 227.6 188 63.3
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 1.3e-57 226.9 174 67.8
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 1.7e-57 226.5 178 67.4
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 2.9e-57 225.7 169 68.0
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 3.8e-57 225.3 171 66.1
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.8e-57 225.3 210 60.0
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 3.8e-57 225.3 171 66.7
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 6.6e-57 224.6 179 65.9
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 1.5e-56 223.4 174 69.5
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 2.8e-55 219.2 171 63.7
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 8.0e-55 217.6 194 62.4
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 8.9e-54 214.2 171 63.7
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 2.0e-53 213.0 155 69.0
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 2.6e-53 212.6 192 59.4
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 7.5e-53 211.1 184 60.3
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 9.8e-53 210.7 165 64.8
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 6.4e-52 208.0 172 68.0
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 2.4e-51 206.1 175 62.3
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 4.6e-50 201.8 142 69.7
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 1.6e-47 193.4 164 62.8
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 2.8e-47 192.6 186 56.5
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 8.3e-44 181.0 163 57.7
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.0e-42 176.4 164 54.9
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 1.3e-41 173.7 130 68.5
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 1.7e-41 173.3 218 48.2
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 6.6e-41 171.4 150 54.7
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 4.0e-38 162.2 173 49.7
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 6.0e-34 148.3 102 73.5
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 3.0e-33 146.0 165 46.7
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 2.5e-32 142.9 89 76.4
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.1e-31 139.8 178 44.9
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 2.8e-31 139.4 125 60.0
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 6.2e-31 138.3 168 44.0
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 1.1e-30 137.5 108 67.6
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.1e-30 136.0 84 76.2
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 6.8e-30 134.8 108 62.0
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 7.6e-29 131.3 101 69.3
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.3e-28 130.6 97 67.0
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 1.7e-28 130.2 97 67.0
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 8.4e-28 127.9 139 49.6
TPR.G8448 Trifolium pratense HOM05D004488 ORTHO05D005374 2.1e-26 123.2 85 77.6
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 3.9e-25 119.0 94 63.8
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 4.3e-24 115.5 78 69.2
CDE02G4257 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 9.9e-21 104.4 82 67.1
Haze_10521 Corylus avellana HOM05D004488 ORTHO05D005374 5.4e-19 98.6 68 70.6
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 3.9e-17 92.4 138 42.0
Cre09.g398845 Chlamydomonas reinhardtii HOM05D004488 ORTHO05D005374 2.5e-16 89.7 135 37.8
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 5.3e-14 82.0 63 68.3
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 7.6e-13 78.2 76 53.9
Gohir.A11G229600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 3.2e-11 72.8 49 81.6
Glyma.08G067761 Glycine max HOM05D004488 ORTHO05D005374 1.6e-10 70.5 56 67.9
A03p62120 Brassica napus HOM05D004488 ORTHO05D005374 3.5e-10 69.3 44 70.5
Ca_00165_v3 Cicer arietinum L. HOM05D004488 ORTHO05D005374 1.8e-09 67.0 41 75.6
Thhalv10002778m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 3.9e-09 65.9 41 80.5
Gohir.A09G038265 Gossypium hirsutum HOM05D003588 ORTHO05D005374 3.7e-07 59.3 46 76.1
Zm00001eb345470 Zea mays HOM05D001942 ORTHO05D008996 8.1e-07 58.2 60 58.3
Zm00001eb130380 Zea mays HOM05D001942 ORTHO05D008996 5.3e-06 55.5 60 56.7


User provided reference genes

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