Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 3.6e-97 358.2 178 100.0
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 8.9e-80 300.4 178 83.1
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.0e-75 287.0 178 80.9
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 2.3e-72 275.8 178 78.1
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.2e-71 273.5 178 77.0
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 5.8e-71 271.2 175 77.1
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 2.9e-70 268.9 178 74.2
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 5.4e-69 264.6 175 74.3
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 5.4e-69 264.6 178 74.2
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 6.0e-68 261.2 170 72.4
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.0e-67 260.4 170 72.4
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 1.0e-67 260.4 174 71.8
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 1.0e-67 260.4 170 71.8
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.3e-67 260.0 170 72.4
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 1.7e-67 259.6 174 71.8
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.3e-67 259.2 170 71.8
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 3.9e-67 258.5 170 71.8
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 5.1e-67 258.1 170 69.4
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 5.1e-67 258.1 170 71.2
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 6.6e-67 257.7 170 71.2
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 8.6e-67 257.3 170 71.2
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 8.6e-67 257.3 170 71.2
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 1.5e-66 256.5 170 71.2
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 1.9e-66 256.1 170 71.2
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 2.5e-66 255.8 170 70.6
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 7.3e-66 254.2 168 71.4
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 9.6e-66 253.8 173 69.4
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 1.2e-65 253.4 173 69.4
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 1.6e-65 253.1 173 71.7
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 2.1e-65 252.7 170 70.0
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 2.1e-65 252.7 170 71.2
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 2.1e-65 252.7 170 71.2
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 2.8e-65 252.3 170 70.0
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 3.6e-65 251.9 170 69.4
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 4.7e-65 251.5 170 70.6
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 6.2e-65 251.1 170 68.8
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 6.2e-65 251.1 170 68.8
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 8.1e-65 250.8 170 69.4
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 8.1e-65 250.8 173 69.4
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 1.4e-64 250.0 170 70.6
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.8e-64 249.6 170 68.8
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 2.4e-64 249.2 171 67.8
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 2.4e-64 249.2 173 68.8
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 4.0e-64 248.4 173 68.2
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 4.0e-64 248.4 169 69.2
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 6.9e-64 247.7 170 67.6
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 1.2e-63 246.9 174 69.0
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.2e-63 246.9 171 67.3
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 1.5e-63 246.5 173 69.4
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.5e-63 246.5 170 68.8
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.0e-63 246.1 173 67.1
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.0e-63 246.1 159 71.7
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 2.6e-63 245.7 169 71.0
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 2.6e-63 245.7 171 69.0
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 2.6e-63 245.7 170 67.1
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 3.4e-63 245.4 170 68.2
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 4.4e-63 245.0 174 67.2
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 5.8e-63 244.6 171 66.1
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 5.8e-63 244.6 173 66.5
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 5.8e-63 244.6 170 67.6
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 5.8e-63 244.6 166 69.3
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 7.6e-63 244.2 169 68.0
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 7.6e-63 244.2 170 68.2
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 9.9e-63 243.8 170 67.6
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 9.9e-63 243.8 170 67.6
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 1.3e-62 243.4 169 68.0
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 1.3e-62 243.4 171 67.3
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.3e-62 243.4 173 67.1
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.7e-62 243.0 170 68.2
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 1.7e-62 243.0 170 68.2
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 1.7e-62 243.0 170 66.5
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 1.7e-62 243.0 175 68.0
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 1.7e-62 243.0 174 66.1
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 2.9e-62 242.3 168 68.5
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 2.9e-62 242.3 170 67.1
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 3.8e-62 241.9 169 67.5
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 3.8e-62 241.9 170 67.6
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 4.9e-62 241.5 174 66.1
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 6.4e-62 241.1 170 65.9
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 6.4e-62 241.1 169 66.9
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 8.4e-62 240.7 169 66.9
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 8.4e-62 240.7 173 67.6
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 1.1e-61 240.4 169 66.3
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 1.1e-61 240.4 169 66.3
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 1.1e-61 240.4 173 67.1
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 2.4e-61 239.2 168 69.6
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 3.2e-61 238.8 169 66.3
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 4.2e-61 238.4 170 65.9
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 4.2e-61 238.4 169 65.7
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 4.2e-61 238.4 169 65.1
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 5.4e-61 238.0 166 66.3
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.4e-61 238.0 170 65.9
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 2.1e-60 236.1 169 64.5
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 2.1e-60 236.1 169 64.5
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 2.7e-60 235.7 169 64.5
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 2.7e-60 235.7 169 64.5
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 3.5e-60 235.3 170 67.6
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 3.5e-60 235.3 170 67.6
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 3.5e-60 235.3 168 66.7
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 4.6e-60 235.0 170 64.1
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 6.0e-60 234.6 158 69.6
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 7.8e-60 234.2 174 64.9
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.0e-59 233.8 171 65.5
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 2.3e-59 232.6 170 62.9
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 2.3e-59 232.6 170 66.5
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 5.1e-59 231.5 170 65.9
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 2.5e-58 229.2 168 64.9
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 4.3e-58 228.4 173 62.4
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 4.3e-58 228.4 172 64.5
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 5.6e-58 228.0 174 63.8
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 7.3e-58 227.6 168 64.3
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 9.6e-58 227.3 173 63.6
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 1.6e-57 226.5 167 65.9
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 2.8e-57 225.7 167 63.5
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 4.8e-57 224.9 167 64.7
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 1.1e-56 223.8 169 63.3
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 1.8e-56 223.0 168 61.3
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 1.8e-56 223.0 167 62.9
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 1.2e-55 220.3 170 62.4
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 1.5e-55 219.9 173 61.3
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 2.0e-55 219.5 170 58.8
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 3.4e-55 218.8 163 66.3
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 1.7e-54 216.5 166 62.0
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 3.8e-54 215.3 167 59.9
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 3.8e-54 215.3 172 61.6
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 3.8e-54 215.3 167 60.5
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 4.9e-54 214.9 170 61.2
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 1.9e-53 213.0 157 61.8
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 1.0e-51 207.2 171 57.3
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 1.8e-51 206.5 171 59.6
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 2.3e-51 206.1 131 70.2
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.3e-49 200.3 163 59.5
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 4.8e-49 198.4 131 67.2
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.8e-49 198.4 167 58.7
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 4.8e-49 198.4 173 57.2
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 4.8e-49 198.4 159 56.0
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 1.8e-48 196.4 167 58.7
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.8e-48 196.4 167 58.7
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 1.2e-47 193.7 171 55.6
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.5e-47 193.4 167 57.5
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 5.8e-47 191.4 170 57.1
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.3e-46 190.3 139 63.3
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 1.7e-46 189.9 163 57.1
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 6.4e-46 188.0 159 54.7
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 8.4e-46 187.6 168 51.8
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 4.2e-45 185.3 181 53.6
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 3.5e-44 182.2 162 56.2
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 7.9e-44 181.0 164 57.9
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 1.3e-43 180.3 100 87.0
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 5.1e-43 178.3 164 56.7
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 2.5e-42 176.0 168 55.4
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.6e-42 174.9 138 63.8
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 9.6e-42 174.1 142 61.3
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 2.1e-41 172.9 167 53.3
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 2.8e-41 172.6 134 63.4
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.5e-39 166.8 166 51.8
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 2.0e-39 166.4 128 62.5
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 5.8e-39 164.9 131 60.3
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 2.9e-38 162.5 142 52.1
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 1.9e-37 159.8 159 54.1
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.2e-37 159.1 129 57.4
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 9.3e-37 157.5 166 50.6
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.2e-36 157.1 166 50.0
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 4.5e-31 138.7 116 59.5
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.3e-30 137.1 96 64.6
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.6e-28 129.0 155 40.6
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 6.1e-28 128.3 93 63.4
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.5e-26 122.9 174 42.0
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 4.3e-26 122.1 89 61.8
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 6.3e-25 118.2 91 57.1
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 4.5e-23 112.1 73 65.8
Mapoly0042s0017 Marchantia polymorpha HOM05D003826 ORTHO05D004479 9.1e-16 87.8 79 55.7
Glyma.08G067900 Glycine max HOM05D003826 ORTHO05D004479 9.4e-13 77.8 75 60.0
MCO09G863 Micromonas commoda HOM05D003826 ORTHO05D004479 1.1e-10 70.9 182 27.5
Gohir.D13G049650 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.5e-10 70.5 53 66.0
Sopen10g017590 Solanum pennellii HOM05D000002 ORTHO05D000001 1.1e-08 64.3 51 54.9
Cre09.g401738 Chlamydomonas reinhardtii HOM05D003826 ORTHO05D004479 9.1e-08 61.2 172 27.9
FAN15G0689 Fragaria x ananassa HOM05D003826 ORTHO05D004479 9.1e-08 61.2 33 78.8
THA.LOC104824951 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 9.1e-08 61.2 121 33.9
Dinv36604 Davidia involucrata HOM05D003826 ORTHO05D004479 1.2e-07 60.8 33 78.8
MCO11G520 Micromonas commoda HOM05D003826 ORTHO05D004479 3.5e-07 59.3 61 41.0


User provided reference genes

Program Settings