Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Phvul.002G201200 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 8.1e-61 236.9 119 100.0
Phvul.002G201100 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 2.5e-38 162.2 119 69.7
Glyma.05G124300 Glycine max HOM05D005269 ORTHO05D006429 4.8e-37 157.9 119 69.7
Psat7g094200 Pisum sativum HOM05D005269 ORTHO05D006429 1.7e-34 149.4 122 65.6
VMungo0251G2623 Vigna mungo HOM05D005269 ORTHO05D006429 3.8e-34 148.3 119 68.9
Psat7g094160 Pisum sativum HOM05D005269 ORTHO05D006429 1.9e-33 146.0 117 63.2
Gohir.A11G225900 Gossypium hirsutum HOM05D005269 ORTHO05D006429 9.3e-33 143.7 123 61.8
Gohir.D11G234500 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.2e-32 143.3 123 61.8
Gorai.007G246800 Gossypium raimondii HOM05D005269 ORTHO05D006429 6.0e-32 141.0 123 61.0
Gohir.A13G001000 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.0e-31 140.2 123 61.0
CiPaw.05G211300 Carya illinoinensis HOM05D005269 ORTHO05D006429 1.3e-31 139.8 126 57.1
Eucgr.I00374 Eucalyptus grandis HOM05D005269 ORTHO05D006429 2.3e-31 139.0 123 56.1
COL.COLO4_12968 Corchorus olitorius HOM05D005269 ORTHO05D006429 3.0e-31 138.7 125 56.0
Thecc.05G226600 Theobroma cacao HOM05D005269 ORTHO05D006429 8.7e-31 137.1 128 57.8
arahy.Tifrunner.gnm1.ann1.UWAC6K Arachis hypogaea HOM05D005269 ORTHO05D006429 1.9e-30 136.0 119 63.0
Duzib128G1401 Durio zibethinus HOM05D005269 ORTHO05D006429 1.3e-29 133.3 128 57.8
Ciclev10033086m.g Citrus clementina HOM05D005269 ORTHO05D006429 1.6e-29 132.9 120 57.5
Cpa.g.sc43.150 Carica papaya HOM05D005269 ORTHO05D006429 2.1e-29 132.5 129 57.4
FvH4_1g22780 Fragaria vesca HOM05D005269 ORTHO05D006429 2.8e-29 132.1 119 62.2
FAN23G2200 Fragaria x ananassa HOM05D005269 ORTHO05D006429 4.8e-29 131.3 112 62.5
FAN26G3478 Fragaria x ananassa HOM05D005269 ORTHO05D006429 6.2e-29 131.0 119 60.5
RcHm_v2.0_Chr2g0117101 Rosa chinensis HOM05D005269 ORTHO05D006429 8.2e-29 130.6 124 57.3
FAN28G1075 Fragaria x ananassa HOM05D005269 ORTHO05D006429 1.4e-28 129.8 119 58.8
Eucgr.L00611 Eucalyptus grandis HOM05D005269 ORTHO05D006429 1.8e-28 129.4 118 55.9
Atru.chr12.1824 Acer truncatum HOM05D005269 ORTHO05D006429 2.4e-28 129.0 120 56.7
PGR004G2648 Punica granatum HOM05D005269 ORTHO05D006429 3.1e-28 128.6 123 56.1
FAN19G2412 Fragaria x ananassa HOM05D005269 ORTHO05D006429 5.3e-28 127.9 119 60.5
Sabra19G0053500 Salix brachista HOM05D005269 ORTHO05D006429 6.9e-28 127.5 120 57.5
A06p06530 Brassica napus HOM05D005269 ORTHO05D006429 9.0e-28 127.1 126 55.6
Ca_18303_v3 Cicer arietinum L. HOM05D005269 ORTHO05D006429 1.2e-27 126.7 114 56.1
DCAR_009029 Daucus carota HOM05D005269 ORTHO05D006429 1.2e-27 126.7 126 53.2
Thecc.05G226200 Theobroma cacao HOM05D005269 ORTHO05D006429 1.2e-27 126.7 128 54.7
CARHR009820 Cardamine hirsuta HOM05D005269 ORTHO05D006429 1.5e-27 126.3 127 52.8
BraA06t23864Z Brassica rapa HOM05D005269 ORTHO05D006429 2.0e-27 125.9 126 54.8
MELO3C005384.2 Cucumis melo HOM05D005269 ORTHO05D006429 2.6e-27 125.6 127 53.5
MD07G1311000 Malus domestica HOM05D005269 ORTHO05D006429 2.6e-27 125.6 128 52.3
THA.LOC104820303 Tarenaya hassleriana HOM05D005269 ORTHO05D006429 2.6e-27 125.6 125 52.0
Peaxi162Scf00047g01229 Petunia axillaris HOM05D005269 ORTHO05D006429 3.4e-27 125.2 119 52.9
BcaC05g24843 Brassica carinata HOM05D005269 ORTHO05D006429 4.5e-27 124.8 126 54.0
BolC5t29544H Brassica oleracea HOM05D005269 ORTHO05D006429 4.5e-27 124.8 126 54.0
Potri.013G076400 Populus trichocarpa HOM05D005269 ORTHO05D006429 4.5e-27 124.8 127 55.9
arahy.Tifrunner.gnm1.ann1.FKKB7G Arachis hypogaea HOM05D005269 ORTHO05D006429 5.8e-27 124.4 120 56.7
ClCG01G005450 Citrullus lanatus HOM05D005269 ORTHO05D006429 5.8e-27 124.4 129 51.9
Haze_00354 Corylus avellana HOM05D005269 ORTHO05D006429 5.8e-27 124.4 132 51.5
Cc11_g00500 Coffea canephora HOM05D005269 ORTHO05D006429 7.6e-27 124.0 128 51.6
EL10Ac4g10063 Beta vulgaris HOM05D005269 ORTHO05D006429 1.3e-26 123.2 129 50.4
Manes.09G130300 Manihot esculenta HOM05D005269 ORTHO05D006429 1.3e-26 123.2 129 51.9
Potri.019G042900 Populus trichocarpa HOM05D005269 ORTHO05D006429 1.3e-26 123.2 118 56.8
Cfa016104 Carpinus fangiana HOM05D005269 ORTHO05D006429 2.9e-26 122.1 140 48.6
Sp1g08440 Schrenkiella parvula HOM05D005269 ORTHO05D006429 5.0e-26 121.3 126 52.4
PGSC0003DMG400029616 Solanum tuberosum HOM05D005269 ORTHO05D006429 5.0e-26 121.3 123 50.4
CAN.G500.91 Capsicum annuum HOM05D005269 ORTHO05D006429 6.5e-26 120.9 120 53.3
Sed0022400 Sechium edule HOM05D005269 ORTHO05D006429 6.5e-26 120.9 119 50.4
Ah.04g159550 Amaranthus hybridus HOM05D005269 ORTHO05D006429 8.4e-26 120.6 125 48.8
CsaV3_5G005690 Cucumis sativus L. HOM05D005269 ORTHO05D006429 8.4e-26 120.6 127 52.8
Thhalv10009118m.g Eutrema salsugineum HOM05D005269 ORTHO05D006429 1.1e-25 120.2 126 51.6
Sc16g0010860 Simmondsia chinensis HOM05D005269 ORTHO05D006429 1.1e-25 120.2 123 49.6
Aa31LG1G5120 Aethionema arabicum HOM05D005269 ORTHO05D006429 1.4e-25 119.8 126 50.8
AT1G09815 Arabidopsis thaliana HOM05D005269 ORTHO05D006429 1.4e-25 119.8 126 50.0
Sed0009591 Sechium edule HOM05D005269 ORTHO05D006429 1.9e-25 119.4 130 50.0
Thecc.05G226400 Theobroma cacao HOM05D005269 ORTHO05D006429 1.9e-25 119.4 128 53.1
Lj4g0020860 Lotus japonicus HOM05D005269 ORTHO05D006429 3.2e-25 118.6 116 56.0
Ah.06g194960 Amaranthus hybridus HOM05D005269 ORTHO05D006429 4.2e-25 118.2 119 48.7
Solyc09g091450.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 4.2e-25 118.2 123 49.6
TAR374G1160 Trochodendron aralioides HOM05D005269 ORTHO05D006429 7.2e-25 117.5 124 50.0
AL1G20410 Arabidopsis lyrata HOM05D005269 ORTHO05D006429 9.3e-25 117.1 122 50.8
Glyma.08G079500 Glycine max HOM05D005269 ORTHO05D006429 9.3e-25 117.1 121 53.7
Prupe.2G330200 Prunus persica HOM05D005269 ORTHO05D006429 9.3e-25 117.1 122 53.3
Sopen09g034380 Solanum pennellii HOM05D005269 ORTHO05D006429 1.2e-24 116.7 123 48.8
Carub.0001s0919 Capsella rubella HOM05D005269 ORTHO05D006429 1.6e-24 116.3 126 50.0
Sabra13G0065600 Salix brachista HOM05D005269 ORTHO05D006429 2.1e-24 115.9 126 52.4
AUR62000236 Chenopodium quinoa HOM05D005269 ORTHO05D006429 2.7e-24 115.5 127 48.0
TWI32G0228 Tripterygium wilfordii HOM05D005269 ORTHO05D006429 2.7e-24 115.5 140 46.4
Nn1g09278 Nelumbo nucifera HOM05D005269 ORTHO05D006429 3.5e-24 115.2 120 49.2
MSTRG.4345 Avicennia marina HOM05D005269 ORTHO05D006429 4.6e-24 114.8 121 49.6
GSVIVG01024265001 Vitis vinifera HOM05D005269 ORTHO05D006429 6.1e-24 114.4 116 51.7
Actinidia33802 Actinidia chinensis HOM05D005269 ORTHO05D006429 7.9e-24 114.0 126 47.6
MBI04_g30790_MAGBIO Magnolia biondii HOM05D005269 ORTHO05D006429 7.9e-24 114.0 119 52.1
Nitab4.5_0001769g0050 Nicotiana tabacum HOM05D005269 ORTHO05D006429 7.9e-24 114.0 125 49.6
unitig_52.g17685 Utricularia gibba HOM05D005269 ORTHO05D006429 1.0e-23 113.6 115 52.2
Aqoxy6G02173 Aquilegia oxysepala HOM05D005269 ORTHO05D006429 2.3e-23 112.5 90 57.8
Medtr4g094465 Medicago truncatula HOM05D005269 ORTHO05D006429 2.3e-23 112.5 123 54.5
AUR62006583 Chenopodium quinoa HOM05D005269 ORTHO05D006429 3.0e-23 112.1 127 47.2
Dinv17239 Davidia involucrata HOM05D005269 ORTHO05D006429 8.7e-23 110.5 133 45.1
Lj7A504G56 Lonicera japonica HOM05D005269 ORTHO05D006429 1.1e-22 110.2 121 49.6
Lalb_Chr07g0189121 Lupinus albus HOM05D005269 ORTHO05D006429 1.5e-22 109.8 119 51.3
Nitab4.5_0001066g0040 Nicotiana tabacum HOM05D005269 ORTHO05D006429 1.9e-22 109.4 133 49.6
Oeu034712.1 Olea europaea HOM05D005269 ORTHO05D006429 1.9e-22 109.4 122 45.1
Gorai.013G185000 Gossypium raimondii HOM05D005269 ORTHO05D006429 2.5e-22 109.0 124 52.4
ATR0568G075 Amborella trichopoda HOM05D005269 ORTHO05D006429 4.3e-22 108.2 113 46.9
Migut.H00004 Erythranthe guttata HOM05D005269 ORTHO05D006429 4.3e-22 108.2 131 47.3
Hma1.2p1_0419F.1_g149570 Hydrangea macrophylla HOM05D005269 ORTHO05D006429 5.7e-22 107.8 125 47.2
CANSAT78G2182 Cannabis sativa HOM05D005269 ORTHO05D006429 7.4e-22 107.5 115 51.3
Peaxi162Scf00536g00089 Petunia axillaris HOM05D005269 ORTHO05D006429 9.7e-22 107.1 116 47.4
Gohir.D13G162800 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.3e-21 106.7 124 52.4
SGA_v2.0_scaffold18G08210 Striga asiatica HOM05D005269 ORTHO05D006429 2.2e-21 105.9 120 46.7
CAN.G17.24 Capsicum annuum HOM05D005269 ORTHO05D006429 3.7e-21 105.1 129 49.6
PGSC0003DMG400019109 Solanum tuberosum HOM05D005269 ORTHO05D006429 8.2e-21 104.0 136 44.9
CDE11G1263 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.1e-20 103.6 119 46.2
Sopen05g032040 Solanum pennellii HOM05D005269 ORTHO05D006429 1.1e-20 103.6 134 47.0
CDE02G3654 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 1.4e-20 103.2 119 47.1
Hund07408 Selenicereus undatus HOM05D005269 ORTHO05D006429 1.8e-20 102.8 119 46.2
Rhsim09G0214100 Rhododendron simsii HOM05D005269 ORTHO05D006429 4.1e-20 101.7 142 41.5
Solyc05g053520.3 Solanum lycopersicum HOM05D005269 ORTHO05D006429 6.9e-20 100.9 134 46.3
Mapoly0002s0066 Marchantia polymorpha HOM05D005269 ORTHO05D006429 9.0e-20 100.5 130 42.3
ECA232G2798 Erigeron canadensis HOM05D005251 ORTHO05D006680 1.2e-19 100.1 121 46.3
TAR629G0465 Trochodendron aralioides HOM05D005269 ORTHO05D006429 1.2e-19 100.1 124 43.5
Gohir.A13G157700 Gossypium hirsutum HOM05D005269 ORTHO05D006429 1.5e-19 99.8 114 48.2
CSS0034044 Camellia sinensis var. sinensis HOM05D005269 ORTHO05D006429 2.6e-19 99.0 126 42.9
HanXRQChr17g0540921 Helianthus annuus HOM05D005269 ORTHO05D006429 3.4e-19 98.6 124 46.8
TPR.G23807 Trifolium pratense HOM05D005269 ORTHO05D006429 4.5e-19 98.2 118 44.1
C05p07920 Brassica napus HOM05D005269 ORTHO05D006429 5.9e-19 97.8 91 54.9
Lsat_1_v5_gn_9_46181 Lactuca sativa HOM05D005269 ORTHO05D006429 5.9e-19 97.8 126 44.4
vmacro22190 Vaccinium macrocarpon HOM05D005269 ORTHO05D006429 7.7e-19 97.4 128 42.2
PSO063G4725 Papaver somniferum HOM05D005269 ORTHO05D006429 5.0e-18 94.7 121 43.8
HPP92_001933 Vanilla planifolia HOM05D005269 ORTHO05D006429 1.4e-17 93.2 106 48.1
PSO782G4777 Papaver somniferum HOM05D005269 ORTHO05D006429 2.5e-17 92.4 127 43.3
Pp3c4_21450 Physcomitrium patens HOM05D005269 ORTHO05D006429 3.2e-17 92.0 91 49.5
SEGI_20967 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 4.2e-17 91.7 132 38.6
Phvul.006G123900 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 9.4e-17 90.5 65 55.4
Medtr4g094458 Medicago truncatula HOM05D005269 ORTHO05D006429 3.6e-16 88.6 66 59.1
Zm00001eb318480 Zea mays HOM05D005269 ORTHO05D006429 1.0e-15 87.0 132 38.6
Medtr1g105865 Medicago truncatula HOM05D005269 ORTHO05D006429 3.0e-15 85.5 112 43.8
Glyma.15G135000 Glycine max HOM05D005269 ORTHO05D006429 4.3e-14 81.6 107 38.3
Os09g0520100 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 6.3e-13 77.8 106 41.5
SMO134G0019 Selaginella moellendorffii HOM05D001491 ORTHO05D001443 6.3e-13 77.8 111 40.5
TPR.G31897 Trifolium pratense HOM05D005269 ORTHO05D006429 2.4e-12 75.9 112 37.5
AUR62032913 Chenopodium quinoa HOM05D005269 ORTHO05D006429 4.1e-12 75.1 64 48.4
PRCOL_00003345 Prasinoderma coloniale HOM05D005269 ORTHO05D006429 1.2e-11 73.6 59 50.8
CDE02G2358 Ceratophyllum demersum HOM05D005269 ORTHO05D006429 7.7e-11 70.9 50 60.0
AagrBONN_evm.TU.Sc2ySwM_344.2125 Anthoceros agrestis HOM05D005269 ORTHO05D006429 1.7e-10 69.7 63 46.0
SEGI_01057 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 1.7e-10 69.7 80 36.2
Cre06.g292950 Chlamydomonas reinhardtii HOM05D005269 ORTHO05D006429 6.5e-10 67.8 130 31.5
Medtr5g006580 Medicago truncatula HOM05D004187 ORTHO05D004890 8.5e-10 67.4 49 57.1
SEGI_08095 Sequoiadendron giganteum HOM05D005269 ORTHO05D006429 8.5e-10 67.4 131 29.8
Mapoly0080s0095 Marchantia polymorpha HOM05D005269 ORTHO05D006429 1.2e-08 63.5 60 45.0
Phvul.006G123800 Phaseolus vulgaris HOM05D005269 ORTHO05D006429 1.2e-08 63.5 92 40.2
Zm00001eb415390 Zea mays HOM05D005269 ORTHO05D006429 6.1e-08 61.2 79 38.0
Os08g0163300 Oryza sativa ssp. japonica HOM05D005269 ORTHO05D006429 7.9e-08 60.8 86 36.0
Actinidia04559 Actinidia chinensis HOM05D005269 ORTHO05D006429 2.6e-06 55.8 94 40.4
MCO11G533 Micromonas commoda HOM05D005269 ORTHO05D006429 9.7e-06 53.9 103 32.0


User provided reference genes

Program Settings